Research Output 1973 2020

Article
1 Citation (Scopus)

A computational algorithm for functional clustering of proteome dynamics during development

Wang, Y., Wang, N., Hao, H., Guo, Y., Zhen, Y., Shi, J. & Wu, R., Sep 1 2014, In : Current Genomics. 15, 3, p. 237-243 7 p.

Research output: Contribution to journalArticle

Proteome
Cluster Analysis
Proteins
Cunninghamia
Seeds
8 Citations (Scopus)

A computational approach for functional mapping of quantitative trait loci that regulate thermal performance curves

Yap, J. S., Wang, C. & Wu, R., Jun 20 2007, In : PloS one. 2, 6, e554.

Research output: Contribution to journalArticle

Quantitative Trait Loci
quantitative trait loci
Hot Temperature
heat
chromosome mapping
30 Citations (Scopus)

A computational approach to the functional clustering of periodic gene-expression profiles

Kim, B. R., Zhang, L., Berg, A., Fan, J. & Wu, R., Oct 1 2008, In : Genetics. 180, 2, p. 821-834 14 p.

Research output: Contribution to journalArticle

Transcriptome
Cluster Analysis
Gene Expression
Technology
Likelihood Functions
3 Citations (Scopus)

A computational-experimental framework for mapping plant coexistence

Jiang, L., Shi, C., Ye, M., Xi, F., Cao, Y., Wang, L., Zhang, M., Sang, M. & Wu, R., May 1 2018, In : Methods in Ecology and Evolution. 9, 5, p. 1335-1352 18 p.

Research output: Contribution to journalArticle

coexistence
plant communities
phenotype
quantitative trait loci
game theory
5 Citations (Scopus)

A computational framework for mapping the timing of vegetative phase change

Xu, M., Jiang, L., Zhu, S., Zhou, C., Ye, M., Mao, K., Sun, L., Su, X., Pan, H., Zhang, S., Huang, M. & Wu, R., Jul 1 2016, In : The New phytologist. 211, 2, p. 750-760 11 p.

Research output: Contribution to journalArticle

Quantitative Trait Loci
phase transition
quantitative trait loci
Phase Transition
Genetic Phenomena
15 Citations (Scopus)

A computational framework for the inheritance pattern of genomic imprinting for complex traits

Wang, C., Wang, Z., Prows, D. R. & Wu, R., Jan 2012, In : Briefings in bioinformatics. 13, 1, p. 34-45 12 p.

Research output: Contribution to journalArticle

Genomic Imprinting
Inheritance Patterns
Genes
Acute Lung Injury
Atlases
1 Citation (Scopus)

A computational framework to assess genome-wide distribution of polymorphic human endogenous retrovirus-k in human populations

Li, W., Lin, L., Malhotra, R., Yang, L., Acharya, R. & Poss, M., Mar 2019, In : PLoS computational biology. 15, 3, e1006564.

Research output: Contribution to journalArticle

Open Access
Retroviridae
Endogenous Retroviruses
human population
Genome
genome
21 Citations (Scopus)

A computationally efficient approach to the estimation of two- and three-dimensional hidden Markov models

Joshi, D., Li, J. & Wang, J. Z., Jul 1 2006, In : IEEE Transactions on Image Processing. 15, 7, p. 1871-1886 16 p.

Research output: Contribution to journalArticle

Hidden Markov models
Parameter estimation
Image segmentation
Computational efficiency
Image analysis
1 Citation (Scopus)

A Computationally Efficient Framework for Automatic Inertial Sensor Calibration

Balamuta, J. J., Molinari, R., Guerrier, S. & Yang, W., Feb 15 2018, In : IEEE Sensors Journal. 18, 4, p. 1636-1646 11 p., 8110606.

Research output: Contribution to journalArticle

Calibration
sensors
Sensors
Measurement errors
computer programs
2 Citations (Scopus)

A Computationally Efficient Projection-Based Approach for Spatial Generalized Linear Mixed Models

Guan, Y. & Haran, M., Oct 2 2018, In : Journal of Computational and Graphical Statistics. 27, 4, p. 701-714 14 p.

Research output: Contribution to journalArticle

Generalized Linear Mixed Model
High-dimensional
Markov Chain Monte Carlo Algorithms
Confounding
Projection
14 Citations (Scopus)

A computational model for functional mapping of genes that regulate intra-cellular circadian rhythms

Liu, T., Liu, X., Chen, Y. & Wu, R., Feb 28 2007, In : Theoretical Biology and Medical Modelling. 4, 5.

Research output: Contribution to journalArticle

Circadian Rhythm
Chromosome Mapping
Quantitative Trait Loci
Statistical Models
Computational Model
8 Citations (Scopus)

A computational model for sex-specific genetic architecture of complex traits in humans: Implications for mapping pain sensitivity

Wang, C., Cheng, Y., Liu, T., Li, Q., Fillingim, R. B., Wallace, M. R., Staud, R., Kaplan, L. & Wu, R., Apr 16 2008, In : Molecular Pain. 4, 13.

Research output: Contribution to journalArticle

Pain
Haplotypes
Sex Characteristics
Linkage Disequilibrium
Statistical Models

A computing platform to map ecological metabolism by integrating functional mapping and the metabolic theory of ecology

Yan, Q., Zhu, X., Jiang, L., Ye, M., Sun, L., Terblanche, J. S. & Wu, R., Jan 1 2017, In : Briefings in bioinformatics. 18, 1, p. 137-144 8 p.

Research output: Contribution to journalArticle

Ecology
Metabolism
Temperature
Genes
Quantitative Trait Loci
22 Citations (Scopus)

A Conceptual Approach to Calculus Made Possible by Technology

Thompson, P. W., Byerley, C. & Hatfield, N., Jul 8 2013, In : Computers in the Schools. 30, 1-2, p. 124-147 24 p.

Research output: Contribution to journalArticle

Students
Curricula
reconstruction
student
curriculum
15 Citations (Scopus)

A conceptual framework for mapping quatitative trait loci regulating ontogenetic allometry

Li, H., Huang, Z., Gai, J., Wu, S., Zeng, Y., Li, Q. & Wu, R., Nov 28 2007, In : PloS one. 2, 11, e1245.

Research output: Contribution to journalArticle

Statistical Models
allometry
Quantitative Trait Loci
loci
statistical models
1 Citation (Scopus)

A confidence region for the ridge path in multiple response surface optimization

Shi, L., Lin, D. K. J. & Peterson, J. J., Aug 1 2016, In : European Journal of Operational Research. 252, 3, p. 829-836 8 p.

Research output: Contribution to journalArticle

Multiple Responses
Confidence Region
Response Surface
Ridge
Path
1 Citation (Scopus)

A Conjugate Model for Dimensional Analysis

Shen, W. & Lin, D. K. J., Jan 2 2018, In : Technometrics. 60, 1, p. 79-89 11 p.

Research output: Contribution to journalArticle

Dimensional Analysis
Water waves
Regression analysis
Physics
Statistics

A consistent estimator for logistic mixed effect models

Wei, Y., Ma, Y., Garcia, T. P. & Sinha, S., Jun 2019, In : Canadian Journal of Statistics. 47, 2, p. 140-156 17 p.

Research output: Contribution to journalArticle

Mixed Effects Model
Consistent Estimator
Logistics
Random Effects
Covariates
9 Citations (Scopus)

A consistent information criterion for support vector machines in diverging model spaces

Zhang, X., Wu, Y., Wang, L. & Li, R., Apr 1 2016, In : Journal of Machine Learning Research. 17

Research output: Contribution to journalArticle

Information Criterion
Support vector machines
Support Vector Machine
Model Selection
Justification
83 Citations (Scopus)

A construction method for orthogonal Latin hypercube designs

Steinberg, D. M. & Lin, D. K. J., Jun 1 2006, In : Biometrika. 93, 2, p. 279-288 10 p.

Research output: Contribution to journalArticle

Latin Hypercube Design
Orthogonal Design
Physical Phenomena
Computer Simulation
Main Effect
39 Citations (Scopus)

A construction method for orthogonal latin hypercube designs with prime power levels

Pang, F., Liu, M. Q. & Lin, D. K. J., Oct 1 2009, In : Statistica Sinica. 19, 4, p. 1721-1728 8 p.

Research output: Contribution to journalArticle

Latin Hypercube Design
Orthogonal Design
Factorial Design
Saturated Design
Computer Experiments
6 Citations (Scopus)
Health Care Surveys
Intellectual Disability
director
content analysis
disability
2 Citations (Scopus)

A continuous threshold expectile model

Zhang, F. & Li, Q., Dec 1 2017, In : Computational Statistics and Data Analysis. 116, p. 49-66 18 p.

Research output: Contribution to journalArticle

Threshold Model
Wages
Data structures
Estimator
Statistics
6 Citations (Scopus)

Acoustic detections of blue whale (Balaenoptera musculus) and fin whale (B. physalus) sounds during a SURTASS LFA exercise

Clark, C. W. & Altman, N. S., Jan 1 2006, In : IEEE Journal of Oceanic Engineering. 31, 1, p. 120-128 9 p.

Research output: Contribution to journalArticle

Acoustics
Acoustic waves
Sonar
Mammals
Sensor arrays
28 Citations (Scopus)

A covariance regression model

Hoff, P. D. & Niu, X., Apr 1 2012, In : Statistica Sinica. 22, 2, p. 729-753 25 p.

Research output: Contribution to journalArticle

Regression Model
Multivariate Response
Heteroscedasticity
Parameterise
Gibbs Sampling
32 Citations (Scopus)

A cross-national study of transitions in deficit counts in two birth cohorts: Implications for modeling ageing

Mitnitski, A., Bao, L., Skoog, I. & Rockwood, K., Mar 1 2007, In : Experimental Gerontology. 42, 3, p. 241-246 6 p.

Research output: Contribution to journalArticle

Aging of materials
Health
Parturition
Health Status
Cross-Sectional Studies
8 Citations (Scopus)

Acute effects of fine particulate air pollution on ST segment height: A longitudinal study

He, F., Shaffer, M. L., Rodriguez-Colon, S., Bixler, E. O., Vgontzas, A. N., Williams, R. W., Wu, R., Cascio, W. E. & Liao, D., Nov 10 2010, In : Environmental Health: A Global Access Science Source. 9, 1, 68.

Research output: Contribution to journalArticle

Air Pollution
Longitudinal Studies
Electrocardiography
Wounds and Injuries
Artifacts
36 Citations (Scopus)

Acute effects of moderate intensity resistance exercise on bone cell activity

Whipple, T. J., Le, B. H., Demers, L. M., Chinchilli, V. M., Petit, M. A., Sharkey, N. & Williams, N. I., Oct 1 2004, In : International Journal of Sports Medicine. 25, 7, p. 496-501 6 p.

Research output: Contribution to journalArticle

Exercise
Bone and Bones
Collagen Type I
Bone Remodeling
Bone Resorption
1 Citation (Scopus)

Adapting clinical trial design to maintain meaningful outcomes during a multicenter asthma trial in the precision medicine era

On behalf of the National Heart Lung and Blood Institute's “AsthmaNet”, Feb 2019, In : Contemporary Clinical Trials. 77, p. 98-103 6 p.

Research output: Contribution to journalArticle

Precision Medicine
Multicenter Studies
Asthma
Eosinophils
Clinical Trials
3 Citations (Scopus)

Adaptive-weight burden test for associations between quantitative traits and genotype data with complex correlations

Wu, X., Guan, T., Liu, D. J., Novelo, L. G. L. & Bandyopadhyay, D., Sep 2018, In : Annals of Applied Statistics. 12, 3, p. 1558-1582 25 p.

Research output: Contribution to journalArticle

Genotype
Genes
Glucose
Throughput
Statistics
178 Citations (Scopus)

A deep Chandra catalog of x-ray point sources toward the galactic center

Muno, M. P., Baganoff, F. K., Bautz, M. W., Brandt, W. N., Broos, P. S., Feigelson, E. D., Garmire, G. P., Morris, M. R., Ricker, G. R. & Townsley, L. K., May 20 2003, In : Astrophysical Journal. 589, 1 I, p. 225-241 17 p.

Research output: Contribution to journalArticle

erg
point sources
catalogs
point source
power law
23 Citations (Scopus)

A deviance function for the quasi-likelihood method

Li, B., Dec 1 1993, In : Biometrika. 80, 4, p. 741-753 13 p.

Research output: Contribution to journalArticle

Likelihood Functions
Deviance
Quasi-likelihood
Likelihood Methods
Log-likelihood Ratio
13 Citations (Scopus)

A differential equation model for functional mapping of a virus-cell dynamic system

Luo, J., Hager, W. W. & Wu, R., Jan 1 2010, In : Journal of Mathematical Biology. 61, 1, p. 1-15 15 p.

Research output: Contribution to journalArticle

Markov Chains
Quantitative Trait Loci
Viral Load
Viruses
Virus
1 Citation (Scopus)

Adipocyte OGT governs diet-induced hyperphagia and obesity

Li, M. D., Vera, N. B., Yang, Y., Zhang, B., Ni, W., Ziso-Qejvanaj, E., Ding, S., Zhang, K., Yin, R., Wang, S., Zhou, X., Fang, X., Xu, T., Erion, D. M. & Yang, X., Dec 1 2018, In : Nature communications. 9, 1, 5103.

Research output: Contribution to journalArticle

obesity
diets
Hyperphagia
fats
Nutrition
3 Citations (Scopus)

A disequilibrium model for detecting genetic mutations for cancer

Li, Y., Ma, C., Wang, Z., Chen, G., Ahn, K., Lazarus, P. & Wu, R., Aug 1 2010, In : Journal of Theoretical Biology. 265, 3, p. 218-224 7 p.

Research output: Contribution to journalArticle

Genetic Models
Cancer
Mutation
Genes
mutation

A dissection model for mapping complex traits

Sang, M., Shi, H., Wei, K., Ye, M., Jiang, L., Sun, L. & Wu, R., Mar 1 2019, In : Plant Journal. 97, 6, p. 1168-1182 15 p.

Research output: Contribution to journalArticle

Dissection
quantitative trait loci
DNA Shuffling
Genetic Selection
Quantitative Trait Loci
1 Citation (Scopus)

Admissibility of MLE for simultaneous estimation in negative binomial problems

Chow, M., Jan 1 1990, In : Journal of Multivariate Analysis. 33, 2, p. 212-219 8 p.

Research output: Contribution to journalArticle

Squared Error Loss
Simultaneous Estimation
Negative Binomial
Maximum likelihood estimation
Admissibility

Admissibility of the nonparametric analog of the Pitman estimate in the case of one unknown parameter

Tempelman, A. & Jaura, J., Jan 1 1988, In : Lithuanian Mathematical Journal. 28, 1, p. 80-89 10 p.

Research output: Contribution to journalArticle

Admissibility
Unknown Parameters
Analogue
Estimate

A Drive to Driven Model of Mapping Intraspecific Interaction Networks

Jiang, L., Xu, J., Sang, M., Zhang, Y., Ye, M., Zhang, H., Wu, B., Zhu, Y., Xu, P., Tai, R., Zhao, Z., Jiang, Y., Dong, C., Sun, L., Griffin, C. H., Gragnoli, C. & Wu, R., Dec 20 2019, In : iScience. 22, p. 109-122 14 p.

Research output: Contribution to journalArticle

Open Access
intraspecific interaction
phenotype
altruism
community ecology
mutualism
80 Citations (Scopus)

Adult female hip bone density reflects teenage sports-exercise patterns but not teenage calcium intake

Lloyd, T., Chinchilli, V. M., Johnson-Rollings, N., Kieselhorst, K., Eggli, D. F. & Marcus, R., Jul 2000, In : Pediatrics. 106, 1 I, p. 40-44 5 p.

Research output: Contribution to journalArticle

Pelvic Bones
Bone Density
Sports
Exercise
Calcium
40 Citations (Scopus)

Advancing the understanding of craving during smoking cessation attempts: A demonstration of the time-varying effect model

Lanza, S. T., Vasilenko, S. A., Liu, X., Li, R. & Piper, M. E., Jan 1 2014, In : Nicotine and Tobacco Research. 16, SUPPL2, p. S127-S134

Research output: Contribution to journalArticle

Smoking Cessation
Tobacco Use Disorder
Placebos
Group Psychotherapy
Craving
37 Citations (Scopus)

A DYNAMICAL ANALYSIS of the KEPLER-80 SYSTEM of FIVE TRANSITING PLANETS

Macdonald, M. G., Ragozzine, D., Fabrycky, D. C., Ford, E. B., Holman, M. J., Isaacson, H. T., Lissauer, J. J., Lopez, E. D., Mazeh, T., Rogers, L., Rowe, J. F., Steffen, J. H. & Torres, G., Oct 2016, In : Astronomical Journal. 152, 4, 105.

Research output: Contribution to journalArticle

planets
planet
eccentricity
planetary systems
transit time
7 Citations (Scopus)

A dynamic Bayesian Markov model for phasing and characterizing haplotypes in next-generation sequencing

Zhang, Y., Apr 1 2013, In : Bioinformatics. 29, 7, p. 878-885 8 p.

Research output: Contribution to journalArticle

Haplotype
Bayesian Model
Haplotypes
Markov Model
Sequencing

A Dynamic Individual-Based Model for High-Resolution Ant Interactions

Wikle, N. B., Hanks, E. M. & Hughes, D. P., Dec 1 2019, In : Journal of Agricultural, Biological, and Environmental Statistics. 24, 4, p. 589-609 21 p.

Research output: Contribution to journalArticle

Individual-based Model
individual-based model
Ants
trophallaxis
ant
7 Citations (Scopus)

A dynamic model for functional mapping of biological rhythms

Fu, G., Luo, J., Berg, A., Wang, Z., Li, J., Das, K., Li, R. & Wu, R., Jan 1 2011, In : Journal of Biological Dynamics. 5, 1, p. 84-101 18 p.

Research output: Contribution to journalArticle

biological rhythm
biological rhythms
dynamic models
quantitative trait loci
gene interaction
49 Citations (Scopus)

A dynamic model for genome-wide association studies

Das, K., Li, J., Wang, Z., Tong, C., Fu, G., Li, Y., Xu, M., Ahn, K., Mauger, D., Li, R. & Wu, R., Jun 1 2011, In : Human genetics. 129, 6, p. 629-639 11 p.

Research output: Contribution to journalArticle

Genome-Wide Association Study
Genes
180 Citations (Scopus)

Aesthetics and emotions in images

Joshi, D., Datta, R., Fedorovskaya, E., Luong, Q. T., Wang, J. Z., Li, J. & Luo, J., Sep 2011, In : IEEE Signal Processing Magazine. 28, 5, p. 94-115 22 p., 5999579.

Research output: Contribution to journalArticle

Painting
Photography
Real-world Applications
Aesthetics
Emotion
19 Citations (Scopus)

A fast algorithm for detecting gene-gene interactions in genome-wide association studies

Li, J., Zhong, W., Li, R. & Wu, R., Dec 1 2014, In : Annals of Applied Statistics. 8, 4, p. 2292-2318 27 p.

Research output: Contribution to journalArticle

Single nucleotide Polymorphism
Fast Algorithm
Nucleotides
Polymorphism
Genome
35 Citations (Scopus)

A fast algorithm for functional mapping of complex traits

Zhao, W., Wu, R., Ma, C. X. & Casella, G., Aug 1 2004, In : Genetics. 167, 4, p. 2133-2137 5 p.

Research output: Contribution to journalArticle

Software
117 Citations (Scopus)

A first comparison of Kepler planet candidates in single and multiple systems

Latham, D. W., Rowe, J. F., Quinn, S. N., Batalha, N. M., Borucki, W. J., Brown, T. M., Bryson, S. T., Buchhave, L. A., Caldwell, D. A., Carter, J. A., Christiansen, J. L., Ciardi, D. R., Cochran, W. D., Dunham, E. W., Fabrycky, D. C., Ford, E. B., Gautier, T. N., Gilliland, R. L., Holman, M. J., Howell, S. B. & 13 others, Ibrahim, K. A., Isaacson, H., Jenkins, J. M., Koch, D. G., Lissauer, J. J., Marcy, G. W., Quintana, E. V., Ragozzine, D., Sasselov, D., Shporer, A., Steffen, J. H., Welsh, W. F. & Wohler, B., May 10 2011, In : Astrophysical Journal Letters. 732, 2 PART II, L24.

Research output: Contribution to journalArticle

planets
planet
census
Neptune (planet)
comparison