Research Output 1973 2020

2017
48 Citations (Scopus)

KIT inhibition by imatinib in patients with severe refractory asthma

Cahill, K. N., Katz, H. R., Cui, J., Lai, J., Kazani, S., Crosby-Thompson, A., Garofalo, D., Castro, M., Jarjour, N., DiMango, E., Erzurum, S., Trevor, J. L., Shenoy, K., Chinchilli, V., Wechsler, M. E., Laidlaw, T. M., Boyce, J. A. & Israel, E., May 18 2017, In : New England Journal of Medicine. 376, 20, p. 1911-1920 10 p.

Research output: Contribution to journalArticle

Mast Cells
Asthma
Placebos
Tryptases
Methacholine Chloride
1 Citation (Scopus)

Landscaping Crossover Interference Across a Genome

Sun, L., Wang, J., Sang, M., Jiang, L., Zhao, B., Cheng, T., Zhang, Q. & Wu, R., Oct 1 2017, In : Trends in Plant Science. 22, 10, p. 894-907 14 p.

Research output: Contribution to journalReview article

landscaping
crossover interference
genome
chromosomes
meiosis
1 Citation (Scopus)

Linear Model Selection When Covariates Contain Errors

Zhang, X., Wang, H., Ma, Y. & Carroll, R. J., Oct 2 2017, In : Journal of the American Statistical Association. 112, 520, p. 1553-1561 9 p.

Research output: Contribution to journalArticle

Model Selection
Covariates
Linear Model
Measurement Error
Selection Procedures
6 Citations (Scopus)

Maximum likelihood estimation for linear Gaussian covariance models

Zwiernik, P., Uhler, C. & Richards, D., Sep 1 2017, In : Journal of the Royal Statistical Society. Series B: Statistical Methodology. 79, 4, p. 1269-1292 24 p.

Research output: Contribution to journalArticle

Maximum Likelihood Estimation
Large Sample Theory
Optimization Problem
Wishart Distribution
Hill Climbing
2 Citations (Scopus)

Minimax estimation of kernel mean embeddings

Tolstikhin, I., Sriperumbudur, B. K. & Muandet, K., Jul 1 2017, In : Journal of Machine Learning Research. 18, p. 1-47 47 p.

Research output: Contribution to journalArticle

Minimax Estimation
Hilbert spaces
Integral equations
kernel
Bochner Integral
1 Citation (Scopus)

Mining Massive Amounts of Genomic Data: A Semiparametric Topic Modeling Approach

Fang, X., Li, M. D., Jordan, M. I. & Liu, H., Jul 3 2017, In : Journal of the American Statistical Association. 112, 519, p. 921-932 12 p.

Research output: Contribution to journalArticle

Transcription Factor
Genomics
Mining
Tumor
Modeling
1 Citation (Scopus)

Model-free conditional independence feature screening for ultrahigh dimensional data

Wang, L., Liu, J. Y., Li, Y. & Li, R., Mar 1 2017, In : Science China Mathematics. 60, 3, p. 551-568 18 p.

Research output: Contribution to journalArticle

Conditional Independence
Screening
Predictors
Model
Heavy-tailed Distribution
6 Citations (Scopus)

Modeling Collective Animal Movement Through Interactions in Behavioral States

Russell, J. C., Hanks, E. M., Modlmeier, A. P. & Hughes, D. P., Sep 1 2017, In : Journal of Agricultural, Biological, and Environmental Statistics. 22, 3, p. 313-334 22 p.

Research output: Contribution to journalArticle

Ants
Animals
Switch Genes
Nest
Animal Behavior
6 Citations (Scopus)
Spatial Modeling
Stationary Distribution
Limiting Distribution
Random walk
Genetic Variation
2 Citations (Scopus)
Molecular Dynamics Simulation
Membranes
Pharmaceutical Preparations
Drug-Related Side Effects and Adverse Reactions
Point Mutation
6 Citations (Scopus)

Multidecadal Scale Detection Time for Potentially Increasing Atlantic Storm Surges in a Warming Climate

Lee, B. S., Haran, M. & Keller, K., Oct 28 2017, In : Geophysical Research Letters. 44, 20, p. 10,617-10,623

Research output: Contribution to journalArticle

storm surges
storm surge
climate
warming
heating
3 Citations (Scopus)

Nearly column-orthogonal designs based on leave-one-out good lattice point sets

Yuan, R., Lin, D. K. J. & Liu, M. Q., Jun 1 2017, In : Journal of Statistical Planning and Inference. 185, p. 29-40 12 p.

Research output: Contribution to journalArticle

Orthogonal Design
Lattice Points
Point Sets
Computer Experiments
Stratification
9 Citations (Scopus)

Nonlinear sufficient dimension reduction for functional data

Li, B. & Song, J., Jun 1 2017, In : Annals of Statistics. 45, 3, p. 1059-1095 37 p.

Research output: Contribution to journalArticle

Sufficient Dimension Reduction
Functional Data
Predictors
Estimator
Reproducing Kernel Hilbert Space
1 Citation (Scopus)

Nonparametric distribution estimation in the presence of familial correlation and censoring

Xu, K., Ma, Y. & Wang, Y., Jan 1 2017, In : Electronic Journal of Statistics. 11, 1, p. 1928-1948 21 p.

Research output: Contribution to journalArticle

Censoring
Mutation
Gene
Phenotype
Estimator
1 Citation (Scopus)

Nonpmodelcheck: An R package for nonparametric lack-of-fit testing and variable selection

Zambom, A. Z. & Akritas, M. G., Jan 1 2017, In : Journal of Statistical Software. 77, 1, 10.

Research output: Contribution to journalArticle

Lack of Fit
Nonparametric Regression
Variable Selection
Hypothesis Testing
Predictors
11 Citations (Scopus)

Novel metrics to measure coverage in whole exome sequencing datasets reveal local and global non-uniformity

Wang, Q., Shashikant, C. S., Jensen, M., Altman, N. S. & Girirajan, S., Dec 1 2017, In : Scientific reports. 7, 1, 885.

Research output: Contribution to journalArticle

Exome
Exons
Genomic Segmental Duplications
Base Composition
Datasets
4 Citations (Scopus)

Novel mutation sites in the development of vancomycin- intermediate resistance in staphylococcus aureus

Wang, Y., Li, X., Jiang, L., Han, W., Xie, X., Jin, Y., He, X. & Wu, R., Jan 10 2017, In : Frontiers in Microbiology. 7, JAN, 2163.

Research output: Contribution to journalArticle

Vancomycin Resistance
Vancomycin
Staphylococcus aureus
Mutation
Methicillin
26 Citations (Scopus)

Nrf2 mitigates LRRK2- and α-synuclein-induced neurodegeneration by modulating proteostasis

Skibinski, G., Hwang, V., Ando, D. M., Daub, A., Lee, A. K., Ravisankar, A., Modan, S., Finucane, M. M., Shaby, B. A. & Finkbeiner, S., Jan 31 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 5, p. 1165-1170 6 p.

Research output: Contribution to journalArticle

Synucleins
Leucine
Parkinson Disease
Phosphotransferases
Proteins
3 Citations (Scopus)

Obesity as a risk factor for developing functional limitation among older adults: A conditional inference tree analysis

Cheng, F. W., Gao, X., Bao, L., Mitchell, D. C., Wood, C., Sliwinski, M. J., Smiciklas-Wright, H., Still, C. D., Rolston, D. D. K. & Jensen, G. L., Jul 1 2017, In : Obesity. 25, 7, p. 1263-1269 7 p.

Research output: Contribution to journalArticle

Obesity
Data Mining
Comorbidity
Logistic Models
Odds Ratio
1 Citation (Scopus)

On the identifiability and estimation of generalized linear models with parametric nonignorable missing data mechanism

Cui, X., Guo, J. & Yang, G., Mar 1 2017, In : Computational Statistics and Data Analysis. 107, p. 64-80 17 p.

Research output: Contribution to journalArticle

Nonignorable Missing Data
Missing Data Mechanism
Identifiability
Generalized Linear Model
Likelihood
4 Citations (Scopus)

Outer Architecture of Kepler-11: Constraints from Coplanarity

Jontof-Hutter, D., Weaver, B. P., Ford, E. B., Lissauer, J. J. & Fabrycky, D. C., May 1 2017, In : Astronomical Journal. 153, 5, 227.

Research output: Contribution to journalArticle

coplanarity
planets
planet
inclination
orbitals
1 Citation (Scopus)

Phylogeography study of the siberian apricot (Prunus sibirica L.) in Northern China assessed by chloroplast microsatellite and DNA makers

Wang, Z., Zeng, Y., Zhang, Z., Sheng, S., Tian, J., Wu, R. & Pang, X., Nov 21 2017, In : Frontiers in Plant Science. 8, 1989.

Research output: Contribution to journalArticle

phylogeography
chloroplasts
microsatellite repeats
China
DNA
2 Citations (Scopus)

Pigs, unlike mice, have two distinct colonic stem cell populations similar to humans that respond to high-calorie diet prior to insulin resistance

Charepalli, V., Reddivari, L., Radhakrishnan, S., Eriksson, E., Xiao, X., Kim, S. W., Shen, F., Kumar, M. V., Li, Q., Bhat, V. B., Knight, R. & Vanamala, J. K. P., Aug 1 2017, In : Cancer Prevention Research. 10, 8, p. 442-450 9 p.

Research output: Contribution to journalArticle

Insulin Resistance
Swine
Stem Cells
Diet
Population
17 Citations (Scopus)

Plant grafting: how genetic exchange promotes vascular reconnection

Wang, J., Jiang, L. & Wu, R., Apr 1 2017, In : New Phytologist. 214, 1, p. 56-65 10 p.

Research output: Contribution to journalReview article

vascular tissues
scions
grafting (plants)
phenotypic variation
blood vessels
68 Citations (Scopus)

Points of Significance: Principal component analysis

Lever, J., Krzywinski, M. & Altman, N. S., Jun 29 2017, In : Nature methods. 14, 7, p. 641-642 2 p.

Research output: Contribution to journalComment/debate

Principal Component Analysis
Principal component analysis
12 Citations (Scopus)

Points of Significance: Ensemble methods: Bagging and random forests

Altman, N. S. & Krzywinski, M., Oct 1 2017, In : Nature methods. 14, 10, p. 933-934 2 p.

Research output: Contribution to journalShort survey

Forests
10 Citations (Scopus)

Points of Significance: Interpreting P values

Altman, N. S. & Krzywinski, M., Feb 28 2017, In : Nature methods. 14, 3, p. 213-214 2 p.

Research output: Contribution to journalShort survey

9 Citations (Scopus)

Points of Significance: Machine learning: A primer

Bzdok, D., Krzywinski, M. & Altman, N. S., Dec 1 2017, In : Nature methods. 14, 12, p. 1119-1120 2 p.

Research output: Contribution to journalShort survey

Learning systems
Hormones
19 Citations (Scopus)

Points of Significance: Clustering

Altman, N. S. & Krzywinski, M., May 30 2017, In : Nature methods. 14, 6, p. 545-546 2 p.

Research output: Contribution to journalShort survey

Cluster Analysis

Predicting disease risk by transformation models in the presence of unspecified subgroup membership

Wang, Q., Ma, Y. & Wang, Y., Oct 1 2017, In : Statistica Sinica. 27, 4, p. 1857-1878 22 p.

Research output: Contribution to journalArticle

Transformation Model
Covariates
Subgroup
Nonparametric Maximum Likelihood
EM Algorithm
1 Citation (Scopus)
Epidural Injections
Radiculopathy
Low Back Pain
Steroids
Physical Examination
5 Citations (Scopus)

Projection correlation between two random vectors

Zhu, L., Xu, K., Li, R. & Zhong, W., Dec 1 2017, In : Biometrika. 104, 4, p. 829-843 15 p.

Research output: Contribution to journalArticle

Random Vector
Projection
Moment Conditions
Test of Independence
Orthogonal Transformation

Quantitative methods and bayesian models for flow cytometry analysis in HIV/AIDS research

Lin, L. & Chan, C., Jan 1 2017, Quantitative Methods for HIV/AIDS Research. CRC Press, p. 135-156 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Flow Cytometry
Bayes Theorem
Bayesian Model
Acquired Immunodeficiency Syndrome
HIV
13 Citations (Scopus)

Race is associated with differences in airway inflammation in patients with asthma

Nyenhuis, S. M., Krishnan, J. A., Berry, A., Calhoun, W. J., Chinchilli, V., Engle, L., Grossman, N., Holguin, F., Israel, E., Kittles, R. A., Kraft, M., Lazarus, S. C., Lehman, E. B., Mauger, D., Moy, J. N., Peters, S. P., Phipatanakul, W., Smith, L. J., Sumino, K., Szefler, S. J. & 4 others, Wechsler, M. E., Wenzel, S., White, S. R. & Ackerman, S. J., Jul 1 2017, In : Journal of Allergy and Clinical Immunology. 140, 1, p. 257-265.e11

Research output: Contribution to journalArticle

African Americans
Asthma
Inflammation
Sputum
Phenotype
7 Citations (Scopus)

Rapid optical variations correlated with X-rays in the 2015 second outburst of V404 Cygni (GS 2023+338)

Kimura, M., Kato, T., Isogai, K., Tak, H., Shidatsu, M., Itoh, H., Tordai, T., Kasai, K., Goff, W., Kiyota, S., Pickard, R. D., Matsumoto, K., Kojiguchi, N., Sugiura, Y., Yamada, E., Tatsumi, T., Miyashita, A., Dubovsky, P. A., Kudzej, I., de Miguel, E. & 7 others, Stein, W. L., Maeda, Y., Pavlenko, E. P., Sosnovskij, A. A., Babina, J. V., Cook, L. M. & Nogami, D., Jan 1 2017, In : Monthly Notices of the Royal Astronomical Society. 471, 1, p. 373-382 10 p.

Research output: Contribution to journalArticle

outburst
intervals
x rays
luminosity
free fall
162 Citations (Scopus)

Rare and low-frequency coding variants alter human adult height

MAGIC Investigators, The EPIC-InterAct Consortium, EPIC-CVD Consortium, CHD Exome+ Consortium, ExomeBP Consortium, T2D-Genes Consortium, GoT2D Genes Consortium, Global Lipids Genetics Consortium & ReproGen Consortium, Feb 9 2017, In : Nature. 542, 7640, p. 186-190 5 p.

Research output: Contribution to journalArticle

Alleles
Insulin-Like Growth Factor Binding Protein 4
Pregnancy-Associated Plasma Protein-A
Growth Disorders
Multifactorial Inheritance
3 Citations (Scopus)

Reflected Stochastic Differential Equation Models for Constrained Animal Movement

Hanks, E. M., Johnson, D. S. & Hooten, M. B., Sep 1 2017, In : Journal of Agricultural, Biological, and Environmental Statistics. 22, 3, p. 353-372 20 p.

Research output: Contribution to journalArticle

Stochastic Equations
Animals
Differential equations
Animal Models
animal models
2 Citations (Scopus)
Open Access
Binomial Model
Random Effects Model
Random Effects
Siméon Denis Poisson
Coverage
10 Citations (Scopus)

Robust and rapid algorithms facilitate large-scale whole genome sequencing downstream analysis in an integrative framework

Li, M., Li, J., Li, M. J., Pan, Z., Hsu, J. S., Liu, D., Zhan, X., Junwen, W., Youqiang, S. & Sham, P. C., May 19 2017, In : Nucleic acids research. 45, 9, e75.

Research output: Contribution to journalArticle

Genotype
Genome
Molecular Sequence Annotation
Quality Control
Alleles
2 Citations (Scopus)

Robust bent line regression

Zhang, F. & Li, Q., Jun 1 2017, In : Journal of Statistical Planning and Inference. 185, p. 41-55 15 p.

Research output: Contribution to journalArticle

Regression line
Change Point
Simultaneous Inference
Linear regression
Reparameterization
2 Citations (Scopus)

Robust mixed effects model for clustered failure time data: Application to Huntington’s disease event measures

Garcia, T. P., Ma, Y., Marder, K. & Wang, Y., Jun 1 2017, In : Annals of Applied Statistics. 11, 2, p. 1085-1116 32 p.

Research output: Contribution to journalArticle

Failure Time Data
Mixed Effects Model
Clustered Data
Covariates
Random Effects
1 Citation (Scopus)
Chlamydia
Gonorrhea
Sexually Transmitted Diseases
Young Adult
Age Groups

Semiparametric analysis of complex polygenic gene-environment interactions in case-control studies

Stalder, O., Asher, A., Liang, L., Carroll, R. J., Ma, Y. & Chatterjee, N., Dec 1 2017, In : Biometrika. 104, 4, p. 801-812 12 p.

Research output: Contribution to journalArticle

Gene-environment Interaction
Gene-Environment Interaction
Case-control Study
genotype-environment interaction
case-control studies
1 Citation (Scopus)

SEQSpark: A Complete Analysis Tool for Large-Scale Rare Variant Association Studies Using Whole-Genome and Exome Sequence Data

Zhang, D., Zhao, L., Li, B., He, Z., Wang, G. T., Liu, D. & Leal, S. M., Jul 6 2017, In : American Journal of Human Genetics. 101, 1, p. 115-122 8 p.

Research output: Contribution to journalArticle

Exome
Genome-Wide Association Study
Genome
High-Throughput Nucleotide Sequencing
Waist-Hip Ratio
3 Citations (Scopus)

Severe Thunderstorm Detection by Visual Learning Using Satellite Images

Zhang, Y., Wistar, S., Li, J., Steinberg, M. A. & Wang, J., Feb 1 2017, In : IEEE Transactions on Geoscience and Remote Sensing. 55, 2, p. 1039-1052 14 p., 7733124.

Research output: Contribution to journalArticle

Thunderstorms
thunderstorm
learning
Satellites
Weather forecasting
14 Citations (Scopus)

Sex-specific biology of the human malaria parasite revealed from the proteomes of mature male and female gametocytes

Miao, J., Chen, Z., Wang, Z., Shrestha, S., Li, X., Li, R. & Cui, L., Apr 1 2017, In : Molecular and Cellular Proteomics. 16, 4, p. 537-551 15 p.

Research output: Contribution to journalArticle

Proteome
Malaria
Parasites
Proteins
Plasmodium
4 Citations (Scopus)
Exponential Family
Graph Model
Random Graphs
Social Networks
Sharing
1 Citation (Scopus)

Simultaneous treatment of unspecified heteroskedastic model error distribution and mismeasured covariates for restricted moment models

Garcia, T. P. & Ma, Y., Oct 1 2017, In : Journal of Econometrics. 200, 2, p. 194-206 13 p.

Research output: Contribution to journalArticle

Covariates
Estimator
Regression model
Efficient estimation
Empirical results

Spatial-temporal analysis of prostate cancer incidence from the Pennsylvania cancer registry, 2000-2011

Wang, M., Matthews, S. A., Iskandarani, K., Li, Y., Li, Z., Chinchilli, V. & Zhang, L., Jan 1 2017, In : Geospatial Health. 12, 2, p. 369-375 7 p., 611.

Research output: Contribution to journalArticle

Spatio-Temporal Analysis
temporal analysis
Registries
cancer
Prostatic Neoplasms
14 Citations (Scopus)

Star Formation in Nearby Clouds (SFiNCs): X-Ray and Infrared Source Catalogs and Membership

Getman, K. V., Broos, P. S., Kuhn, M. A., Feigelson, E., Richert, A. J. W., Ota, Y., Bate, M. R. & Garmire, G. P., Apr 1 2017, In : Astrophysical Journal, Supplement Series. 229, 2, 28.

Research output: Contribution to journalArticle

catalogs
star formation
x rays
stars
point sources