Research Output 1973 2020

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2019

Modern phylogenomics: Building phylogenetic trees using the multispecies coalescent model

Liu, L., Anderson, C., Pearl, D. K. & Edwards, S. V., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 211-239 29 p. (Methods in Molecular Biology; vol. 1910).

Research output: Chapter in Book/Report/Conference proceedingChapter

Open Access
Genes
Gene Flow
Expressed Sequence Tags
Bayes Theorem
Datasets
2018

A review of exoplanets detection methods

Babu, G. J., Jan 1 2018, Springer Proceedings in Mathematics and Statistics. Springer New York LLC, Vol. 244. p. 79-87 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Exoplanets
Kepler
NASA
Review

New statistical methods inspired by data collected from alcohol and substance abuse research

Buu, A. & Li, R., Jan 18 2018, Alcohol Use Disorders: A Developmental Science Approach to Etiology. Oxford University Press, p. 354-366 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Alcoholism
Substance-Related Disorders
Research
Outcome Assessment (Health Care)

Stochastic Population Models

Fricks, J. & Hanks, E. M., Jan 1 2018, Handbook of Statistics. Srinivasa Rao, A. S. R. & Rao, C. R. (eds.). Elsevier B.V., p. 443-480 38 p. (Handbook of Statistics; vol. 39).

Research output: Chapter in Book/Report/Conference proceedingChapter

Population Model
Stochastic Model
Stochastic models
Random processes
Stochastic Simulation
2017
2 Citations (Scopus)

A review on dimension-reduction based tests for regressions

Guo, X. & Zhu, L., Jan 1 2017, From Statistics to Mathematical Finance: Festschrift in Honour of Winfried Stute. Springer International Publishing, p. 105-125 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Anniversaries and Special Events
Dimension Reduction
Covariates
Regression Model
Regression

Quantitative methods and bayesian models for flow cytometry analysis in HIV/AIDS research

Lin, L. & Chan, C., Jan 1 2017, Quantitative Methods for HIV/AIDS Research. CRC Press, p. 135-156 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Flow Cytometry
Bayes Theorem
Bayesian Model
Acquired Immunodeficiency Syndrome
HIV

The contribution of angiogenesis to variation in bone development and evolution

Percival, C. J., Kawasaki, K., Huang, Y., Weiss, K., Jabs, E. W., Li, R. & Richtsmeier, J. T., Jan 1 2017, Building Bones: Bone Formation and Development in Anthropology. Cambridge University Press, p. 26-51 26 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

phylogeny
weaver
social behavior
cognition
diagnostic
2016

[No title available]

Luo, J., Berg, A., Ahn, K., Das, K., Li, J., Wang, Z., Li, Y. & Wu, R., Apr 19 2016, Handbook of Adaptive Designs in Pharmaceutical and Clinical Development. CRC Press

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Citation (Scopus)

Study design for sequencing studies

Honaas, L. A., Altman, N. S. & Krzywinski, M., Jan 1 2016, Methods in Molecular Biology. Humana Press Inc., p. 39-66 28 p. (Methods in Molecular Biology; vol. 1418).

Research output: Chapter in Book/Report/Conference proceedingChapter

Genomics
DNA Sequence Analysis
Molecular Biology
Research Design
RNA

Time series of extremes

Reich, B. J. & Shaby, B. A., Jan 6 2016, Extreme Value Modeling and Risk Analysis: Methods and Applications. CRC Press, p. 131-152 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Serial Dependence
Extremes
Time series
Extreme Values
Stock Prices
2015

Functional mapping: How to map genes for phenotypic plasticity of development

Sun, L., Jiang, L., Ye, M., Zhu, X., Wang, J., Gosik, K. & Wu, R., Jul 10 2015, Evolutionary Biology: Biodiversification from Genotype to Phenotype. Springer International Publishing, p. 3-17 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

phenotypic plasticity
Plasticity
quantitative trait loci
Genes
Quantitative Trait Loci

Local modeling: Density estimation and nonparametric regression

Fan, J. & Li, R., Jan 1 2015, Advanced Medical Statistics. World Scientific Publishing Co., p. 1125-1171 47 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Density Estimation
Nonparametric Regression
Modeling
1 Citation (Scopus)

Photo composition feedback and enhancement exploiting spatial design categories and the notan dark-light principle

Li, J., Yao, L. & Wang, J., Jan 1 2015, Mobile Cloud Visual Media Computing: From Interaction to Service. Springer International Publishing, p. 113-144 32 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Photocomposition
Feedback
Chemical analysis
Computer vision
1 Citation (Scopus)

Replicating sequencing-based association studies of rare variants

Liu, D. & Leal, S. M., Jan 1 2015, Assessing Rare Variation in Complex Traits: Design and Analysis of Genetic Studies. Springer New York, p. 201-213 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Exome
Genes
Chromosome Mapping
Genetic Models
Population Genetics
2014

On aesthetics and emotions in scene images: A computational perspective

Joshi, D., Datta, R., Fedorovskaya, E., Lu, X., Luong, Q. T., Wang, J., Li, J. & Luo, J., Jan 1 2014, Scene Vision: Making Sense of What We See. The MIT Press, p. 241-272 32 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Esthetics
Emotions
Emotion
Computational
Aesthetics
2013

Modeling the Pharmacogenetic Architecture of Drug Response

Lu, Y., Li, X., Feng, S., Li, Y., Zeng, X., Li, M., Liu, X. & Wu, R., Aug 27 2013, Pharmacogenomics. Elsevier Inc., p. 295-308 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Pharmacogenetics
Genome-Wide Association Study
Pharmaceutical Preparations
Precision Medicine
Drug and Narcotic Control

Penn State University Department of Statistics

Harkness, W., Hettmansperger, T., Lin, D. K. J. & Rosenberger, J. L., Nov 1 2013, Strength in Numbers: The Rising of Academic Statistics Departments in the U. S.. Springer New York, p. 199-214 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Statistics
Narrative
Truth
6 Citations (Scopus)

Statistical methods for astronomy

Feigelson, E. & Babu, G. J., Jan 1 2013, Planets, Stars and Stellar Systems Volume 2: Astronomical Techniques, Software, and Data. Springer Netherlands, p. 445-480 36 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

astronomy
statistics
data smoothing
high level languages
goodness of fit
1 Citation (Scopus)

Systems mapping: A computational tool for personalized medicine

Fu, G., Liu, J., Luo, J., Wang, Z., Wang, Y., Wang, N. & Wu, R., Jan 1 2013, Handbook of Personalized Medicine: Advances in Nanotechnology, Drug Delivery and Therapy. Pan Stanford Publishing Pte. Ltd., p. 321-340 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Precision Medicine
Nanotechnology
Medicine
5 Citations (Scopus)

Using a distributed SDP approach to solve simulated protein molecular conformation problems

Fang, X. & Toh, K. C., Nov 1 2013, Distance Geometry: Theory, Methods, and Applications. Springer New York, Vol. 9781461451280. p. 351-376 26 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Molecular Conformation
Conformation
Protein
Molecules
Root mean square deviation
2012
2 Citations (Scopus)

A Local Linear Estimation Procedure for Functional Multilevel Modeling

Li, R., Root, T. L. & Shiffman, S., Mar 22 2012, Models for Intensive Longitudinal Data. Oxford University Press

Research output: Chapter in Book/Report/Conference proceedingChapter

Linear Models
Research Personnel
Research
Pharmaceutical Preparations

Functional mapping of developmental processes: Theory, applications, and prospects

Das, K., Huang, Z., Liu, J., Fu, G., Li, J., Li, Y., Tong, C., Gai, J. & Wu, R., Jan 1 2012, Quantitative Trait Loci (QTL): Methods and Protocols. Humana Press Inc., p. 227-243 17 p. (Methods in Molecular Biology; vol. 871).

Research output: Chapter in Book/Report/Conference proceedingChapter

Quantitative Trait Loci
Biological Models
Systems Biology
Internal-External Control
7 Citations (Scopus)

Statistical models for genetic mapping in polyploids: Challenges and opportunities

Li, J., Das, K., Liu, J., Fu, G., Li, Y., Tobias, C. & Wu, R., Jan 1 2012, Quantitative Trait Loci (QTL): Methods and Protocols. Humana Press Inc., p. 245-261 17 p. (Methods in Molecular Biology; vol. 871).

Research output: Chapter in Book/Report/Conference proceedingChapter

Polyploidy
Statistical Models
Chromosome Mapping
Chromosomes
Genome
2 Citations (Scopus)

Testing Time Series Linearity. Traditional and Bootstrap Methods

Berg, A., McMurry, T. & Politis, D. N., Jan 1 2012, Handbook of Statistics. Elsevier B.V., p. 27-42 16 p. (Handbook of Statistics; vol. 30).

Research output: Chapter in Book/Report/Conference proceedingChapter

Bootstrap Method
Linearity
Time series
Testing
Resampling
2011
11 Citations (Scopus)

Bandwidth selection in an EM-like algorithm for nonparametric multivariate mixtures

Benaglia, T., Chauveau, D. & Hunter, D. R., Jan 1 2011, Nonparametric Statistics and Mixture Models: A Festschrift in Honor of Thomas P Hettmansperger. World Scientific Publishing Co., p. 15-27 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Bandwidth Selection
Bandwidth
Repeated Measures
EM Algorithm
Identically distributed
6 Citations (Scopus)

Deconvolution density estimation on the space of positive definite symmetric matrices

Kim, P. T. & Richards, D., Jan 1 2011, Nonparametric Statistics and Mixture Models: A Festschrift in Honor of Thomas P Hettmansperger. World Scientific Publishing Co., p. 147-168 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Symmetric Positive Definite Matrix
Deconvolution
Density Estimation
Positive definite matrix
Nonparametric Estimator

Functional Mapping for Predicting Drug Response and Enabling Personalized Medicine

Li, Y., Hou, W., Zhao, W., Ahn, K. & Wu, R., Nov 7 2011, Systems Bio in Drug Discovery. John Wiley and Sons, p. 303-321 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Medicine
Pharmaceutical Preparations
21 Citations (Scopus)

Gaussian random field models for spatial data

Haran, M., May 10 2011, Handbook of Markov Chain Monte Carlo. CRC Press, p. 449-478 30 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Gaussian Random Field
Spatial Data
Model
1 Citation (Scopus)

Iterative conditional maximization algorithm for nonconcave penalized likelihood

Zhang, Y. & Li, R., Jan 1 2011, Nonparametric Statistics and Mixture Models: A Festschrift in Honor of Thomas P Hettmansperger. World Scientific Publishing Co., p. 336-351 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Penalized Likelihood
Poisson Regression
Quadratic Approximation
Local Approximation
Penalty Function

Recent history functional linear models

Kim, K., Sentürk, D. & Li, R., Jan 1 2011, Nonparametric Statistics and Mixture Models: A Festschrift in Honor of Thomas P Hettmansperger. World Scientific Publishing Co., p. 169-182 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Functional Linear Model
Varying Coefficient Model
Sliding Window
Estimation Algorithms
Smoothing

Statistical models for globular cluster luminosity distribution

Buot, M. L. G. & Richards, D., Jan 1 2011, Nonparametric Statistics and Mixture Models: A Festschrift in Honor of Thomas P Hettmansperger. World Scientific Publishing Co., p. 58-68 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Statistical Model
Gaussian distribution
t-distribution
Kolmogorov-Smirnov Statistic
Bayesian Information Criterion
2010

Dynamical evolution of planetary systems

Ford, E. B., Jan 1 2010, Extra-Solar Planets: The Detection, Formation, Evolution and Dynamics of Planetary Systems. CRC Press, p. 101-121 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

planetary systems
gases
planets
critical mass
protoplanetary disks
2009
2 Citations (Scopus)

Algebraic geometry of 2×2 contingency tables

Slavkovic, A. B. & Fienberg, S. E., Jan 1 2009, Algebraic and Geometric Methods in Statistics. Cambridge University Press, p. 63-82 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Algebraic Geometry
Contingency Table
Geometric Representation
Joint Distribution
Odds Ratio

Batches and Blocks, Sample Pools and Subsamples in the Design and Analysis of Gene Expression Studies

Altman, N. S., Nov 2 2009, Batch Effects and Noise in Microarray Experiments: Sources and Solutions. Wiley-Blackwell, p. 33-50 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Gene expression
Linear Models
Research Personnel
Gene Expression
Microarrays

Constraining the false positive rate for kepler planet candidates with multicolour photometry from the gtc

Colón, K. D., Ford, E. B. & Morehead, R. C., Apr 1 2009, Relativity in Fundamental Astronomy: Dynamics, Reference Frames, and Data Analysis. Klioner, S. A., Soffel, M. H. & Seidelmann, P. K. (eds.). S261 ed. p. 342-353 12 p. (Proceedings of the International Astronomical Union; vol. 5, no. S261).

Research output: Chapter in Book/Report/Conference proceedingChapter

transit
photometry
planets
eclipsing binary stars
orbitals

Traditional formation scenarios fail to explain 4:3 mean motion resonances

Rein, H., Payne, M. J., Veras, D. & Ford, E. B., Apr 1 2009, Relativity in Fundamental Astronomy: Dynamics, Reference Frames, and Data Analysis. Klioner, S. A., Soffel, M. H. & Seidelmann, P. K. (eds.). S261 ed. p. 187-202 16 p. (Proceedings of the International Astronomical Union; vol. 5, no. S261).

Research output: Chapter in Book/Report/Conference proceedingChapter

Planets
planets
planet
planetary systems
damping
2007
4 Citations (Scopus)

An overview on variable selection for longitudinal data

Dziak, J. & Li, R., Jan 1 2007, Quantitative Medical Data Analysis Using Mathematical Tools and Statistical Techniques. World Scientific Publishing Co., p. 3-24 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

imidazole mustard
Patient Selection
Bandages
Research Personnel
2006
2 Citations (Scopus)

An overview on nonparametric and semiparametric techniques for longitudinal data

Fan, J. & Li, R., Jan 1 2006, Frontiers in Statistics: Dedicated to Peter John Bickel in Honor of his 65th Birthday. Imperial College Press, p. 277-303 27 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Longitudinal Data Analysis
Semiparametric Model
Nonparametric Model
Longitudinal Data
Review

A stabilized uniform Q-Q plot to detect non-multinormality

Fang, K. T., Liang, J., Hickernell, F. J. & Li, R., Jan 1 2006, Random Walk, Sequential Analysis and Related Topics: A Festschrift in Honor of Yuan-Shih Chow. World Scientific Publishing Co., p. 254-268 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Acceptance region
Q-Q Plot
Spherical Distribution
High-dimensional Data
Data analysis
5 Citations (Scopus)

Statistical inference for response surface optima

Lin, D. K. J. & Peterson, J. J., Jan 1 2006, Response Surface Methodology and Related Topics. World Scientific Publishing Co., p. 65-88 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Response Surface
Statistical Inference
Optimization
Multiple Responses
Second-order Model
2005
1 Citation (Scopus)

The vegetation red edge spectroscopic feature as a surface biomarker

Seager, S. & Ford, E. B., Jan 1 2005, Astrophysics of Life: Proceedings of the Space Telescope Science Institute Symposium, held in Baltimore, Maryland May 6-9, 2002. Cambridge University Press, Vol. 9780521824903. p. 67-75 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

biomarkers
vegetation
planets
extrasolar planets
habitability
2004
24 Citations (Scopus)

Linear mixed effects models with flexible generalized skew-elliptical random effects

Ma, Y., Genton, M. G. & Davidian, M., Jan 1 2004, Skew-Elliptical Distributions and Their Applications: A Journey Beyond Normality. CRC Press, p. 339-358 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Linear Mixed Effects Model
Random Effects
Skew
Normality
Rate of change
2003

Automated scoring of polygraph data

Slavkovic, A. B., Jan 1 2003, Statistical Data Mining and Knowledge Discovery. CRC Press, p. 135-154 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Logistics
Statistical methods
Scoring
Data collection
Incidents
5 Citations (Scopus)

Ch. 2. Industrial experimentation for screening

Lin, D. K. J., Dec 1 2003, Statistics in Industry. Khattree, R. & Rao, C. R. (eds.). p. 33-73 41 p. (Handbook of Statistics; vol. 22).

Research output: Chapter in Book/Report/Conference proceedingChapter

Experimentation
Screening
3 Citations (Scopus)

Ch. 20. Point processes in astronomy: Exciting events in the universe

Scargle, J. D. & Babu, G. J., Dec 1 2003, Stochastic Processes: Modelling and Simulation. Shanbhag, D. N. & Rao, C. R. (eds.). p. 795-825 31 p. (Handbook of Statistics; vol. 21).

Research output: Chapter in Book/Report/Conference proceedingChapter

Astronomy
Point Process
Gamma rays
Gamma-ray Bursts
Real-world Applications
120 Citations (Scopus)

Ch. 4. Uniform experimental designs and their applications in industry

Fang, K. T. & Lin, D. K. J., Dec 1 2003, Statistics in Industry. Khattree, R. & Rao, C. R. (eds.). p. 131-170 40 p. (Handbook of Statistics; vol. 22).

Research output: Chapter in Book/Report/Conference proceedingChapter

Uniform Design
Experimental design
Design of experiments
Industry
Data Modeling
5 Citations (Scopus)

Nonparametric Models for ANOVA and ANCOVA: A Review

Akritas, M. G. & Brunner, E., Jan 1 2003, Recent Advances and Trends in Nonparametric Statistics. Elsevier Inc., p. 79-91 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Analysis of Covariance
Nonparametric Model
Analysis of variance
Nonparametric Hypotheses
Ordinal Data