Research Output 1973 2020

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Review article
27 Citations (Scopus)

11 Response surface designs

Draper, N. R. & Lin, D. K. J., Dec 1 1996, In : Handbook of Statistics. 13, p. 343-375 33 p.

Research output: Contribution to journalReview article

Response Surface Design
15 Citations (Scopus)

19 Bootstrap methodology

Babu, G. J. & Radhakrishna Rao, C., Dec 1 1993, In : Handbook of Statistics. 9, p. 627-659 33 p.

Research output: Contribution to journalReview article

Bootstrap
Methodology
1 Citation (Scopus)

20 Data-based sampling and model-based estimation for environmental resources

Patil, G. P., Babu, G. J., Hennemuth, R. C., Myers, W. L., Rajarshi, M. B. & Taillie, C., Dec 1 1988, In : Handbook of Statistics. 6, p. 489-513 25 p.

Research output: Contribution to journalReview article

Model-based
Sampling
Resources
6 Citations (Scopus)

20 Statistical analysis with incomplete data: A selective review

Akritas, M. G. & LaValley, M. P., Dec 1 1997, In : Handbook of Statistics. 15, p. 551-632 82 p.

Research output: Contribution to journalReview article

Incomplete Data
Statistical Analysis
Statistical methods
Review
1 Citation (Scopus)

33 Methods of establishing in vitro-in vivo relationships for modified release drug products

Mauger, D. & Chinchilli, V., Dec 1 2000, In : Handbook of Statistics. 18, p. 977-1002 26 p.

Research output: Contribution to journalReview article

Drug products
Drugs
Relationships
13 Citations (Scopus)

7 Statistical analysis of censored environmental data

Akritas, M. G., Ruscitti, T. F. & Patil, G. P., Dec 1 1994, In : Handbook of Statistics. 12, p. 221-242 22 p.

Research output: Contribution to journalReview article

Censored Data
Maximum likelihood
Statistical Analysis
Statistical methods
Bibliographies
10 Citations (Scopus)

Accelerating computation in Markov random field models for spatial data via structured MCMC

Haran, M., Hodges, J. S. & Carlin, B. P., Jun 1 2003, In : Journal of Computational and Graphical Statistics. 12, 2, p. 249-264 16 p.

Research output: Contribution to journalReview article

Spatial Data
Markov Chain Monte Carlo
Random Field
Markov Chain Monte Carlo Algorithms
Spatial Model
18 Citations (Scopus)

A conceptual framework for pharmacodynamic genome-wide association studies in pharmacogenomics

Wu, R., Tong, C., Wang, Z., Mauger, D., Tantisira, K., Szefler, S. J., Chinchilli, V. & Israel, E., Oct 1 2011, In : Drug Discovery Today. 16, 19-20, p. 884-890 7 p.

Research output: Contribution to journalReview article

Genome-Wide Association Study
Pharmacogenetics
Pharmaceutical Preparations
Genetic Testing
Genetic Association Studies
12 Citations (Scopus)

A dynamic framework for quantifying the genetic architecture of phenotypic plasticity

Wang, Z., Pang, X., Lv, Y., Xu, F., Zhou, T., Li, X., Feng, S., Li, J., Li, Z. & Wu, R., Jan 1 2013, In : Briefings in Bioinformatics. 14, 1, p. 82-95 14 p., bbs009.

Research output: Contribution to journalReview article

Plasticity
Quantitative Trait Loci
Dynamic models
Genes
Genotype
8 Citations (Scopus)

A general quantitative genetic model for haplotyping a complex trait in humans

Wu, S., Yang, J., Wang, C. & Wu, R., Aug 1 2007, In : Current Genomics. 8, 5, p. 343-350 8 p.

Research output: Contribution to journalReview article

Genetic Models
Haplotypes
Single Nucleotide Polymorphism
Diploidy
Uncertainty
6 Citations (Scopus)

A graphical comparison of supersaturated designs

Balkin, S. D. & Lin, D. K. J., Jan 1 1998, In : Communications in Statistics - Theory and Methods. 27, 6, p. 1289-1303 15 p.

Research output: Contribution to journalReview article

Supersaturated Design
Box plot
Graphical Methods
Information Matrix
Single valued
136 Citations (Scopus)

An Earth-sized planet in the habitable zone of a cool star

Quintana, E. V., Barclay, T., Raymond, S. N., Rowe, J. F., Bolmont, E., Caldwell, D. A., Howell, S. B., Kane, S. R., Huber, D., Crepp, J. R., Lissauer, J. J., Ciardi, D. R., Coughlin, J. L., Everett, M. E., Henze, C. E., Horch, E., Isaacson, H., Ford, E. B., Adams, F. C., Still, M. & 3 others, Hunter, R. C., Quarles, B. & Selsis, F., Jan 1 2014, In : Science. 344, 6181, p. 277-280 4 p.

Research output: Contribution to journalReview article

Earth (Planet)
Planets
Water
Orbit
Atmosphere
10 Citations (Scopus)

A note on small composite designs for sequential experimentation

Nguyen, N. K. & Lin, D. K. J., Mar 1 2011, In : Journal of Statistical Theory and Practice. 5, 1, p. 109-117 9 p.

Research output: Contribution to journalReview article

Experimentation
Composite
Design
First-order
Second-order Model
25 Citations (Scopus)

An overview of the prediction of protein DNA-binding sites

Si, J., Zhao, R. & Wu, R., Mar 6 2015, In : International journal of molecular sciences. 16, 3, p. 5194-5215 22 p.

Research output: Contribution to journalReview article

Binding sites
DNA
deoxyribonucleic acid
Binding Sites
proteins
2 Citations (Scopus)

A pattern-mixture model for haplotype analysis of longitudinal traits with non-ignorable dropout

Li, H. & Wu, R., Jan 1 2012, In : Statistica Sinica. 22, 1, p. 337-357 21 p.

Research output: Contribution to journalReview article

Pattern-mixture Model
Haplotype
Drop out
Dobutamine
Model
44 Citations (Scopus)

A radio survey of weak T Tauri stars in Taurus-Auriga

O'Neal, D., Feigelson, E., Mathieu, R. D. & Myers, P. C., Jan 1 1990, In : Astronomical Journal. 100, 5, p. 1610-1617 8 p.

Research output: Contribution to journalReview article

T Tauri stars
pre-main sequence stars
radio
stars
Very Large Array (VLA)
12 Citations (Scopus)
Planets
Orbit
Planetary Evolution
United States National Aeronautics and Space Administration
Gravitation
7 Citations (Scopus)

A review of dynamic network models with latent variables

Kim, B., Lee, K. H., Xue, L. & Niu, X., Jan 1 2018, In : Statistics Surveys. 12, p. 105-135 31 p.

Research output: Contribution to journalReview article

Dynamic Networks
Latent Variables
Network Model
Dynamic Model
Latent Class Model
14 Citations (Scopus)

A selective overview of feature screening for ultrahigh-dimensional data

Liu, J. Y., Zhong, W. & Li, R. Z., Oct 29 2015, In : Science China Mathematics. 58, 10

Research output: Contribution to journalReview article

Screening
High-dimensional Data
Variable Selection
Biomedical Imaging
Penalized Least Squares
25 Citations (Scopus)

A sensitive 1.5 GHz radio survey around the north ecliptic pole

Kollgaard, R. I., Brinkmann, W., Chester, M. M., Feigelson, E., Hertz, P., Reich, P. & Wielebinski, R., Jan 1 1994, In : Astrophysical Journal, Supplement Series. 93, 1, p. 145-159 15 p.

Research output: Contribution to journalReview article

ecliptic
catalogs
poles
radio
Very Large Array (VLA)
13 Citations (Scopus)

A unified framework for mapping quantitative trait loci in bivalent tetraoploids using single-dose restriction fragments: A case study from alfalfa

Ma, C. X., Casella, G., Shen, Z. J., Osborn, T. C. & Wu, R., Dec 1 2002, In : Genome research. 12, 12, p. 1974-1981 8 p.

Research output: Contribution to journalReview article

Medicago sativa
Quantitative Trait Loci
Chromosome Pairing
Polyploidy
Meiosis

A unified mapping framework of multifaceted pharmacodynamic responses to hypertension interventions

Wang, Q., Gan, J., Wei, K., Berceli, S. A., Gragnoli, C. & Wu, R., Mar 1 2019, In : Drug Discovery Today. 24, 3, p. 883-889 7 p.

Research output: Contribution to journalReview article

Quantitative Trait Loci
Blood Pressure
Hypertension
Pharmaceutical Preparations
Patient Rights
2 Citations (Scopus)

Bayesian Inference in the Presence of Intractable Normalizing Functions

Park, J. & Haran, M., Jul 3 2018, In : Journal of the American Statistical Association. 113, 523, p. 1372-1390 19 p.

Research output: Contribution to journalReview article

Bayesian inference
Exponential Model
Graph Model
Bayesian Analysis
Point Process
726 Citations (Scopus)

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

Landt, S. G., Marinov, G. K., Kundaje, A., Kheradpour, P., Pauli, F., Batzoglou, S., Bernstein, B. E., Bickel, P., Brown, J. B., Cayting, P., Chen, Y., DeSalvo, G., Epstein, C., Fisher-Aylor, K. I., Euskirchen, G., Gerstein, M., Gertz, J., Hartemink, A. J., Hoffman, M. M., Iyer, V. R. & 27 others, Jung, Y. L., Karmakar, S., Kellis, M., Kharchenko, P. V., Li, Q., Liu, T., Liu, X. S., Ma, L., Milosavljevic, A., Myers, R. M., Park, P. J., Pazin, M. J., Perry, M. D., Raha, D., Reddy, T. E., Rozowsky, J., Shoresh, N., Sidow, A., Slattery, M., Stamatoyannopoulos, J. A., Tolstorukov, M. Y., White, K. P., Xi, S., Farnham, P. J., Lieb, J. D., Wold, B. J. & Snyder, M., Sep 1 2012, In : Genome research. 22, 9, p. 1813-1831 19 p.

Research output: Contribution to journalReview article

Chromatin Immunoprecipitation
Practice Guidelines
Histone Code
Guidelines
High-Throughput Nucleotide Sequencing
13 Citations (Scopus)

Clustering periodic patterns of gene expression based on fourier approximations

Kim, B. R., Littell, R. C. & Wu, R., May 1 2006, In : Current Genomics. 7, 3, p. 197-203 7 p.

Research output: Contribution to journalReview article

Cluster Analysis
Gene Expression
Technology
cdc Genes
Periodicity
26 Citations (Scopus)

Computational prediction of RNA-binding proteins and binding sites

Si, J., Cui, J., Cheng, J. & Wu, R., Nov 3 2015, In : International journal of molecular sciences. 16, 11, p. 26303-26317 15 p.

Research output: Contribution to journalReview article

RNA-Binding Proteins
Binding sites
RNA
Protein Binding
Binding Sites
5 Citations (Scopus)

Computational predictions of the site of metabolism of cytochrome P450 2D6 substrates: Comparative analysis, molecular docking, bioactivation and toxicological implications

Ford, K. A., Ryslik, G. A., Sodhi, J., Halladay, J., Diaz, D., Dambach, D. & Masuda, M., Jul 3 2015, In : Drug Metabolism Reviews. 47, 3, p. 291-319 29 p.

Research output: Contribution to journalReview article

Molecular Docking Simulation
Cytochrome P-450 CYP2D6
Toxicology
Computer Simulation
Small Molecule Libraries
4 Citations (Scopus)

Computing genetic imprinting expressed by haplotypes.

Cheng, Y., Berg, A., Wu, S., Li, Y. & Wu, R., 2009, In : Methods in molecular biology (Clifton, N.J.). 573, p. 189-212 24 p.

Research output: Contribution to journalReview article

Genomic Imprinting
Haplotypes
Genome
Genes
Gene Regulatory Networks
4 Citations (Scopus)

Conditional inference given partial information in contingency tables using Markov bases

Karwa, V. & Slavkovic, A. B., May 1 2013, In : Wiley Interdisciplinary Reviews: Computational Statistics. 5, 3, p. 207-218 12 p.

Research output: Contribution to journalReview article

Markov Basis
Conditional Inference
Partial Information
Contingency Table
Algebraic Statistics
2 Citations (Scopus)

Confronting models with data: The challenges of estimating disease spillover

Cross, P. C., Prosser, D. J., Ramey, A. M., Hanks, E. M. & Pepin, K. M., Sep 30 2019, In : Philosophical Transactions of the Royal Society B: Biological Sciences. 374, 1782, 20180435.

Research output: Contribution to journalReview article

Pathogens
pathogens
Livestock
Information Systems
prediction
2 Citations (Scopus)

Co-shared genetics and possible risk gene pathway partially explain the comorbidity of schizophrenia, major depressive disorder, type 2 diabetes, and metabolic syndrome

Postolache, T. T., del Bosque-Plata, L., Jabbour, S., Vergare, M., Wu, R. & Gragnoli, C., Apr 1 2019, In : American Journal of Medical Genetics, Part B: Neuropsychiatric Genetics. 180, 3, p. 186-203 18 p.

Research output: Contribution to journalReview article

Type 2 Diabetes Mellitus
Comorbidity
Schizophrenia
Major Depressive Disorder
Genes
131 Citations (Scopus)

Defining and unraveling biocomplexity

Michener, W. K., Baerwald, T. J., Firth, P., Palmer, M. A., Rosenberger, J. L., Sandlin, E. A. & Zimmerman, H., Jan 1 2001, In : BioScience. 51, 12, p. 1018-1023 6 p.

Research output: Contribution to journalReview article

8 Citations (Scopus)

Delivering systems pharmacogenomics towards precision medicine through mathematics

Wang, Y., Wang, N., Wang, J., Wang, Z. & Wu, R., Jun 30 2013, In : Advanced Drug Delivery Reviews. 65, 7, p. 905-911 7 p.

Research output: Contribution to journalReview article

Precision Medicine
Mathematics
Pharmacogenetics
Biomarkers
Pharmaceutical Preparations
11 Citations (Scopus)

Designs for linkage analysis and association studies of complex diseases.

Cui, Y., Li, G., Li, S. & Wu, R., Nov 9 2010, In : Methods in molecular biology (Clifton, N.J.). 620, p. 219-242 24 p.

Research output: Contribution to journalReview article

Genomics
Genomic Imprinting
Gene Expression
Genetic Linkage
Chromosome Mapping
8 Citations (Scopus)

Detecting sequence-sequence interactions for complex diseases

Lin, M. & Wu, R., Mar 1 2006, In : Current Genomics. 7, 1, p. 59-72 14 p.

Research output: Contribution to journalReview article

HapMap Project
Haplotypes
Nucleotides
Quantitative Trait Loci
Single Nucleotide Polymorphism

Editorial

Li, R., Oct 1 2016, In : Annals of Statistics. 44, 5, p. 1817-1820 4 p.

Research output: Contribution to journalReview article

126 Citations (Scopus)
Public Health
Smoking
Tobacco Products
Electronic Cigarettes
Smoking Cessation
12 Citations (Scopus)

Epigenetic game theory: How to compute the epigenetic control of maternal-to-zygotic transition

Wang, Q., Gosik, K., Xing, S., Jiang, L., Sun, L., Chinchilli, V. & Wu, R., Mar 1 2017, In : Physics of Life Reviews. 20, p. 126-137 12 p.

Research output: Contribution to journalReview article

game theory
Game Theory
Methylation
embryos
Game theory
1 Citation (Scopus)

Epistatic control of human obesity as revealed by linkage disequilibrium mapping: A report from the NHLBI-sponsored WISE study

Li, H., Wu, R., Lin, M., Terra, S. G., Pepine, C. J., McGorray, S. P., Johnson, B. D. & Johnson, J. A., Nov 1 2006, In : Current Genomics. 7, 7, p. 463-468 6 p.

Research output: Contribution to journalReview article

National Heart, Lung, and Blood Institute (U.S.)
Chromosome Mapping
Linkage Disequilibrium
Ischemia
Obesity
14 Citations (Scopus)
Meta-Analysis
Asthma
Publication Bias
Causality
Placebos
11 Citations (Scopus)

Genetic dissection of complex endosperm traits

Wang, X., Xu, C., Wu, R. & Larkins, B. A., Jul 1 2009, In : Trends in Plant Science. 14, 7, p. 391-398 8 p.

Research output: Contribution to journalReview article

endosperm
epigenetics
genetic techniques and protocols
raw materials
quantitative trait loci
37 Citations (Scopus)
National Heart, Lung, and Blood Institute (U.S.)
Asthma
Clinical Trials
Guidelines
Research
23 Citations (Scopus)

Head Injury and Pulmonary Embolism: A Retrospective Report Based on the Pennsylvania Trauma Outcomes Study

Page, R. B., Spott, M. A., Krishnamurthy, S., Taleghani, C., Chinchilli, V., Kelly, D. F., Chandler, W. F., Marion, D. W. & Wilberger, J. E., Jan 1 2004, In : Neurosurgery. 54, 1, p. 143-149 7 p.

Research output: Contribution to journalReview article

Pulmonary Embolism
Craniocerebral Trauma
Outcome Assessment (Health Care)
Wounds and Injuries
Incidence
6 Citations (Scopus)

How to compute which genes control drug resistance dynamics

Guo, Y., Luo, J., Wang, J., Wang, Y. & Wu, R., Apr 1 2011, In : Drug Discovery Today. 16, 7-8, p. 339-344 6 p.

Research output: Contribution to journalReview article

Virus Diseases
Drug Resistance
Viruses
Viral Drug Resistance
Genes
26 Citations (Scopus)

Improvements in prevalence trend fitting and incidence estimation in EPP 2013

Brown, T., Bao, L., Eaton, J. W., Hogan, D. R., Mahy, M., Marsh, K., Mathers, B. M. & Puckett, R., Nov 11 2014, In : AIDS. 28, p. S415-S425

Research output: Contribution to journalReview article

Incidence
Acquired Immunodeficiency Syndrome
United Nations
HIV
Calibration
7 Citations (Scopus)

Incorporating incidence information within the UNAIDS estimation and projection package framework: A study based on simulated incidence assay data

Bao, L., Ye, J. & Hallett, T. B., Nov 11 2014, In : AIDS. 28, p. S515-S522

Research output: Contribution to journalReview article

Incidence
Sample Size
Uncertainty
Biomarkers
HIV
224 Citations (Scopus)

Inference in curved exponential family models for networks

Hunter, D. R. & Handcock, M. S., Sep 1 2006, In : Journal of Computational and Graphical Statistics. 15, 3, p. 565-583 19 p.

Research output: Contribution to journalReview article

Curved Exponential Family
Graph Model
Random Graphs
Maximum Likelihood Estimation
Methodology
9 Citations (Scopus)

Integrating Evolutionary Game Theory into Mechanistic Genotype-Phenotype Mapping

Zhu, X., Jiang, L., Ye, M., Sun, L., Gragnoli, C. & Wu, R., May 1 2016, In : Trends in Genetics. 32, 5, p. 256-268 13 p.

Research output: Contribution to journalReview article

Game Theory
Genotype
Phenotype
Genetic Selection
Quantitative Trait Loci
165 Citations (Scopus)

Issues in the use of inhaled glucocorticoids

Kamada, A. K., Szefler, S. J., Martin, R. J., Boushey, H. A., Chinchilli, V., Drazen, J. M., Fish, J. E., Israel, E., Lazarus, S. C., Lemanske, R. F., Cherniak, R. M., Hurd, S. S., Peters, S. P., Sorkness, C. & Zwillich, C. W., Jan 1 1996, In : American Journal of Respiratory and Critical Care Medicine. 153, 6 I, p. 1739-1748 10 p.

Research output: Contribution to journalReview article

Drug Dose Response Relationship
Androstadienes
Fluocinolone Acetonide
Inhalation Administration
Anti-Asthmatic Agents
34 Citations (Scopus)

Kernel mean embedding of distributions: A review and beyond

Muandet, K., Fukumizu, K., Sriperumbudur, B. K. & Schölkopf, B., Jan 1 2017, In : Foundations and Trends in Machine Learning. 10, 1-2, p. 1-141 141 p.

Research output: Contribution to journalReview article

Hilbert spaces
Arsenals
Reinforcement learning
Testing
Support vector machines