• United States

Research Output

2020

Antibacterial effects of low-temperature plasma generated by atmospheric-pressure plasma jet are mediated by reactive oxygen species

Nicol, M. K. J., Brubaker, T. R., Honish, B. J., Simmons, A. N., Kazemi, A., Geissel, M. A., Whalen, C. T., Siedlecki, C. A., Bilén, S. G., Knecht, S. D. & Kirimanjeswara, G. S., Dec 1 2020, In : Scientific reports. 10, 1, 3066.

Research output: Contribution to journalArticle

Open Access

A rapid and label-free platform for virus capture and identification from clinical samples

Yeh, Y. T., Gulino, K., Zhang, Y. H., Sabestien, A., Chou, T. W., Zhou, B., Lin, Z., Albert, I., Lu, H., Swaminathan, V., Ghedin, E. & Terrones, M., Jan 14 2020, In : Proceedings of the National Academy of Sciences of the United States of America. 117, 2, p. 895-901 7 p.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations

Change is Good: What is New for ToxSci?

Peters, J. M., Jan 1 2020, In : Toxicological Sciences. 173, 1, p. 1-2 2 p.

Research output: Contribution to journalEditorial

1 Scopus citations

CLINICAL CHALLENGE: YEW TOXICOSIS in BLACK BEARS (URSUS AMERICANUS)

Mee, N. C., Murphy, L., Fisher, J. S., Brooks, J., Ternent, M. & Brown, J. D., Jun 2020, In : Journal of Zoo and Wildlife Medicine. 51, 2, p. 459-460 2 p.

Research output: Contribution to journalArticle

Composite score analysis for unsupervised comparison and network visualization of metabolomics data

Kellogg, J. J., Kvalheim, O. M. & Cech, N. B., Jan 25 2020, In : Analytica Chimica Acta. 1095, p. 38-47 10 p.

Research output: Contribution to journalArticle

1 Scopus citations

Detection and removal of biologically active organic micropollutants from hospital wastewater

Castillo Meza, L., Piotrowski, P., Farnan, J., Tasker, T. L., Xiong, B., Weggler, B., Murrell, K., Dorman, F. L., Vanden Heuvel, J. P. & Burgos, W. D., Jan 15 2020, In : Science of the Total Environment. 700, 134469.

Research output: Contribution to journalArticle

Identification of adulteration in botanical samples with untargeted metabolomics

Wallace, E. D., Todd, D. A., Harnly, J. M., Cech, N. B. & Kellogg, J. J., Jul 1 2020, In : Analytical and Bioanalytical Chemistry. 412, 18, p. 4273-4286 14 p.

Research output: Contribution to journalArticle

Identifying age cohorts responsible for peste des petits ruminants virus transmission among sheep, goats, and cattle in northern Tanzania

Herzog, C. M., de Glanville, W. A., Willett, B. J., Cattadori, I. M., Kapur, V., Hudson, P. J., Buza, J., Swai, E. S., Cleaveland, S. & Bjørnstad, O. N., Jan 1 2020, In : Viruses. 12, 2, 186.

Research output: Contribution to journalArticle

Open Access

Inactivation of Escherichia coli O157:H7 in apple cider by resveratrol and naringenin

Surendran Nair, M., Ma, F., Lau, P., Upadhyaya, I. & Venkitanarayanan, K., Apr 2020, In : Food Microbiology. 86, 103327.

Research output: Contribution to journalArticle

2 Scopus citations
Open Access

Microbial Metabolite Signaling Is Required for Systemic Iron Homeostasis

Das, N. K., Schwartz, A. J., Barthel, G., Inohara, N., Liu, Q., Sankar, A., Hill, D. R., Ma, X., Lamberg, O., Schnizlein, M. K., Arqués, J. L., Spence, J. R., Nunez, G., Patterson, A. D., Sun, D., Young, V. B. & Shah, Y. M., Jan 7 2020, In : Cell Metabolism. 31, 1, p. 115-130.e6

Research output: Contribution to journalArticle

5 Scopus citations

Moving forward with ToxSci

Peters, J. M., Feb 1 2020, In : Toxicological Sciences. 173, 2, p. 227-228 2 p.

Research output: Contribution to journalEditorial

Open Access
Open Access

PCB126 blocks the thermogenic beiging response of adipocytes

Gourronc, F. A., Perdew, G. H., Robertson, L. W. & Klingelhutz, A. J., Mar 1 2020, In : Environmental Science and Pollution Research. 27, 9, p. 8897-8904 8 p.

Research output: Contribution to journalArticle

Perfluorooctane sulfonate alters gut microbiota-host metabolic homeostasis in mice

Zhang, L., Rimal, B., Nichols, R. G., Tian, Y., Smith, P. B., Hatzakis, E., Chang, S. C., Butenhoff, J. L., Peters, J. M. & Patterson, A. D., Feb 15 2020, In : Toxicology. 431, 152365.

Research output: Contribution to journalArticle

Quantification for non-targeted LC/MS screening without standard substances

Liigand, J., Wang, T., Kellogg, J., Smedsgaard, J., Cech, N. & Kruve, A., Dec 1 2020, In : Scientific reports. 10, 1, 5808.

Research output: Contribution to journalArticle

Open Access

Rapid Size-Based Isolation of Extracellular Vesicles by Three-Dimensional Carbon Nanotube Arrays

Yeh, Y. T., Zhou, Y., Zou, D., Liu, H., Yu, H., Lu, H., Swaminathan, V., Mao, Y. & Terrones, M., Mar 18 2020, In : ACS Applied Materials and Interfaces. 12, 11, p. 13134-13139 6 p.

Research output: Contribution to journalArticle

Selective Ah receptor modulators attenuate NPC1L1-mediated cholesterol uptake through repression of SREBP-2 transcriptional activity

Muku, G. E., Kusnadi, A., Kuzu, G., Tanos, R., Murray, I. A., Gowda, K., Amin, S. & Perdew, G. H., Feb 1 2020, In : Laboratory Investigation. 100, 2, p. 250-264 15 p.

Research output: Contribution to journalArticle

1 Scopus citations

Surveillance for Heterakis spp. in Game Birds and Cage-Free, Floor-Raised Poultry in Pennsylvania

Greenawalt, D., Yabsley, M. J., Williams, L., Casalena, M. J., Boyd, R., Debelak, E., Wildlicka, H., Phillips, E., Wallner-Pendleton, E., Dunn, P. & Brown, J., Jun 2020, In : Avian diseases. 64, 2, p. 210-215 6 p.

Research output: Contribution to journalArticle

Targeting the pregnane X receptor using microbial metabolite mimicry

Dvořák, Z., Kopp, F., Costello, C. M., Kemp, J. S., Li, H., Vrzalová, A., Štěpánková, M., Bartoňková, I., Jiskrová, E., Poulíková, K., Vyhlídalová, B., Nordstroem, L. U., Karunaratne, C. V., Ranhotra, H. S., Mun, K. S., Naren, A. P., Murray, I. A., Perdew, G. H., Brtko, J., Toporova, L. & 22 others, Schön, A., Wallace, W. G., Walton, W. G., Redinbo, M. R., Sun, K., Beck, A., Kortagere, S., Neary, M. C., Chandran, A., Vishveshwara, S., Cavalluzzi, M. M., Lentini, G., Cui, J. Y., Gu, H., March, J. C., Chatterjee, S., Matson, A., Wright, D., Flannigan, K. L., Hirota, S. A., Sartor, R. B. & Mani, S., Apr 7 2020, In : EMBO Molecular Medicine. 12, 4, e11621.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

The gut microbiome: an orchestrator of xenobiotic metabolism

Collins, S. L. & Patterson, A. D., Jan 2020, In : Acta Pharmaceutica Sinica B. 10, 1, p. 19-32 14 p.

Research output: Contribution to journalReview article

Open Access
4 Scopus citations

The microbiome modulating activity of bile acids

Tian, Y., Gui, W., Koo, I., Smith, P. B., Allman, E. L., Nichols, R. G., Rimal, B., Cai, J., Liu, Q. & Patterson, A. D., Jan 1 2020, (Accepted/In press) In : Gut microbes.

Research output: Contribution to journalArticle

1 Scopus citations

Ultrasound-Guided Cytosolic Protein Delivery via Transient Fluorous Masks

Sloand, J. N., Nguyen, T. T., Zinck, S. A., Cook, E. C., Zimudzi, T. J., Showalter, S. A., Glick, A. B., Simon, J. C. & Medina, S. H., Apr 28 2020, In : ACS nano. 14, 4, p. 4061-4073 13 p.

Research output: Contribution to journalArticle

Vancomycin prevents fermentable fiber-induced liver cancer in mice with dysbiotic gut microbiota

Singh, V., Yeoh, B. S., Abokor, A. A., Golonka, R. M., Tian, Y., Patterson, A. D., Joe, B., Heikenwalder, M. & Vijay-Kumar, M., Jan 1 2020, (Accepted/In press) In : Gut microbes.

Research output: Contribution to journalArticle

Winter tick (Dermacentor albipictus)–associated dermatitis in a wild elk (Cervus canadensis) in Pennsylvania, USA

Calvente, E., Chinnici, N., Brown, J., Banfield, J. E., Brooks, J. W. & Yabsley, M. J., Jan 2020, In : Journal of wildlife diseases. 56, 1, p. 247-250 4 p.

Research output: Contribution to journalArticle

2019

Activation of the Ah Receptor Modulates Gastrointestinal Homeostasis and the Intestinal Microbiome

Muku, G. E., Murray, I. A. & Perdew, G. H., Oct 1 2019, In : Current Pharmacology Reports. 5, 5, p. 319-331 13 p.

Research output: Contribution to journalReview article

Acute phase protein, α – 1- acid glycoprotein (AGP-1), has differential effects on TLR-2 and TLR-4 mediated responses

Sumanth, M. S., Abhilasha, K. V., Jacob, S. P., Chaithra, V. H., Basrur, V., Willard, B., McIntyre, T. M., Prabhu, K. S. & Marathe, G. K., Sep 2019, In : Immunobiology. 224, 5, p. 672-680 9 p.

Research output: Contribution to journalArticle

1 Scopus citations

A defined antigen skin test for the diagnosis of bovine tuberculosis

Srinivasan, S., Jones, G., Veerasami, M., Steinbach, S., Holder, T., Zewude, A., Fromsa, A., Ameni, G., Easterling, L., Bakker, D., Juleff, N., Gifford, G., Hewinson, R. G., Martin Vordermeier, H. & Kapur, V., Jul 17 2019, In : Science Advances. 5, 7, eaax4899.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Age-associated distribution of antimicrobial-resistant salmonella enterica and escherichia coli isolated from dairy herds in pennsylvania, 2013-2015

Cao, H., Pradhan, A. K., Karns, J. S., Hovingh, E. P., Wolfgang, D. R., Vinyard, B. T., Kim, S. W., Salaheen, S., Haley, B. J. & Van Kessel, J. A. S., Jan 1 2019, In : Foodborne pathogens and disease. 16, 1, p. 60-67 8 p.

Research output: Contribution to journalReview article

4 Scopus citations

Aligning the Paradoxical Role of Vitamin D in Gastrointestinal Immunity

Cantorna, M. T., Rogers, C. J. & Arora, J., Jul 2019, In : Trends in Endocrinology and Metabolism. 30, 7, p. 459-466 8 p.

Research output: Contribution to journalReview article

2 Scopus citations

Angiomotin-like 1 links paramyxovirus M proteins to NEDD4 family ubiquitin ligases

Ray, G., Schmitt, P. T. & Schmitt, A. P., Feb 2019, In : Viruses. 11, 2, 128.

Research output: Contribution to journalArticle

2 Scopus citations

Antimicrobial resistance among escherichia coli isolated from veal calf operations in Pennsylvania

Salaheen, S., Kim, S. W., Cao, H., Wolfgang, D. R., Hovingh, E. P., Karns, J. S., Haley, B. J. & Van Kessel, J. A. S., Jan 1 2019, In : Foodborne pathogens and disease. 16, 1, p. 74-80 7 p.

Research output: Contribution to journalArticle

1 Scopus citations

Antimicrobial resistance in fecal escherichia coli and salmonella enterica from dairy calves: A systematic review

Springer, H. R., Denagamage, T. N., Fenton, G. D., Haley, B. J., Van Kessel, J. A. S. & Hovingh, E. P., Jan 2019, In : Foodborne pathogens and disease. 16, 1, p. 23-34 12 p.

Research output: Contribution to journalReview article

1 Scopus citations

Antimicrobial resistance on dairy farms

Jayarao, B., Almeida, R. & Oliver, S. P., Jan 2019, In : Foodborne pathogens and disease. 16, 1, p. 1-4 4 p.

Research output: Contribution to journalReview article

1 Scopus citations

A probe-based real-time PCR assay for the detection of Neospora caninum in clinical samples from cattle

Barry, R., Nissly, R. H., Feria, W., Thirumalapura, N., Tewari, D., Jayarao, B. M. & Kuchipudi, S. V., May 1 2019, In : Veterinary Parasitology. 269, p. 2-6 5 p.

Research output: Contribution to journalArticle

A random subset implementation of weighted quantile sum (WQSRS) regression for analysis of high-dimensional mixtures

Curtin, P., Kellogg, J., Cech, N. & Gennings, C., Jan 1 2019, (Accepted/In press) In : Communications in Statistics: Simulation and Computation.

Research output: Contribution to journalArticle

3 Scopus citations

A review of analytical platforms for accurate bile acid measurement

Dutta, M., Cai, J., Gui, W. & Patterson, A. D., Jul 19 2019, In : Analytical and Bioanalytical Chemistry. 411, 19, p. 4541-4549 9 p.

Research output: Contribution to journalReview article

2 Scopus citations

Assessment of a commercially available serum pregnancy-specific protein B test in free-ranging elk (Cervus canadensis) in Pennsylvania, USA

Seixas, J. S., Jayarao, B. M., Banfield, J. E., Johnson, J. B. & Brown, J. D., Oct 2019, In : Journal of wildlife diseases. 55, 4, p. 912-916 5 p.

Research output: Contribution to journalArticle

Associations of postpartum lying time with culling, milk yield, cyclicity, and reproductive performance of lactating dairy cows

Piñeiro, J. M., Menichetti, B. T., Barragan, A. A., Relling, A. E., Weiss, W. P., Bas, S. & Schuenemann, G. M., Apr 2019, In : Journal of dairy science. 102, 4, p. 3362-3375 14 p.

Research output: Contribution to journalArticle

1 Scopus citations

Associations of pre- and postpartum lying time with metabolic, inflammation, and health status of lactating dairy cows

Piñeiro, J. M., Menichetti, B. T., Barragan, A. A., Relling, A. E., Weiss, W. P., Bas, S. & Schuenemann, G. M., Apr 2019, In : Journal of dairy science. 102, 4, p. 3348-3361 14 p.

Research output: Contribution to journalArticle

2 Scopus citations

Berberine directly affects the gut microbiota to promote intestinal farnesoid X receptor activation

Tian, Y., Cai, J., Gui, W., Nichols, R. G., Koo, I., Zhang, J., Anitha, M. & Patterson, A. D., Feb 2019, In : Drug Metabolism and Disposition. 47, 2, p. 86-93 8 p.

Research output: Contribution to journalArticle

13 Scopus citations

CLARITE Facilitates the Quality Control and Analysis Process for EWAS of Metabolic-Related Traits

Lucas, A. M., Palmiero, N. E., McGuigan, J., Passero, K., Zhou, J., Orie, D., Ritchie, M. D. & Hall, M. A., Dec 18 2019, In : Frontiers in Genetics. 10, 1240.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Complete genome sequences of 20 nontyphoidal Salmonella isolates from Rwanda

Byukusenge, M., Li, L., Uwanyirigira, M., Vepachedu, V. R., Kariyawasam, S., Nzayirambaho, M., Kuchipudi, S. V. & Jayarao, B. M., Mar 21 2019, In : Microbiology Resource Announcements. 8, 12, e00016-19.

Research output: Contribution to journalArticle

Open Access

Complete genome sequences of Newcastle disease virus isolates from backyard chickens in northern India

Maan, S., Mor, S. K., Jindal, N., Joshi, V. G., Ravishankar, C., Singh, V. K., Ravindran, R., Sahoo, N., Radzio-Basu, J., Schilling, M. A., McVey, W. R., Mahajan, N. K., Kapur, V. & Goyal, S. M., Jan 1 2019, In : Microbiology Resource Announcements. 8, 27, e00467-19.

Research output: Contribution to journalArticle

Open Access

Conserved, breed-dependent, and subline-dependent innate immune responses of Fayoumi and Leghorn chicken embryos to Newcastle disease virus infection

Schilling, M. A., Memari, S., Cavanaugh, M., Katani, R., Deist, M. S., Radzio-Basu, J., Lamont, S. J., Buza, J. J. & Kapur, V., Dec 1 2019, In : Scientific reports. 9, 1, 7209.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

Continuing a Legacy: Adapting to Ensure the Bright Future of ToxSci

Peters, J. M., Jul 1 2019, In : Toxicological Sciences. 170, 1, p. 1-2 2 p.

Research output: Contribution to journalEditorial

2 Scopus citations

Cross Sectional Study and Risk Factors Analysis of Francisella tularensis in Soil Samples in Punjab Province of Pakistan

Muhammad, J., Rabbani, M., Shabbir, M. Z., Muhammad, K., Ghori, M. T., Chaudhry, H. R., Hassnain, Z. U., Jamil, T., Abbas, T., Chaudhry, M. H., Haisem-Ur-Rasool, M., Ali, M. A., Nisar, M., Kirimanjeswara, G. S. & Jayarao, B. M., Jan 1 2019, In : Frontiers in Cellular and Infection Microbiology. 9, APR, 089.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Crth2 receptor signaling down-regulates lipopolysaccharide-induced NF-αB activation in murine macrophages via changes in intracellular calcium

Diwakar, B. T., Yoast, R., Nettleford, S., Qian, F., Lee, T. J., Berry, S., Huffnagle, I., Rossi, R. M., Trebak, M., Paulson, R. F. & Prabhu, K. S., Nov 1 2019, In : FASEB Journal. 33, 11, p. 12838-12852 15 p.

Research output: Contribution to journalArticle

1 Scopus citations

Cytokines: Key determinants of resistance or disease progression in visceral leishmaniasis: Opportunities for novel diagnostics and immunotherapy

Dayakar, A., Chandrasekaran, S., Kuchipudi, S. V. & Kalangi, S. K., Jan 1 2019, In : Frontiers in immunology. 10, APR, 670.

Research output: Contribution to journalReview article

Open Access
9 Scopus citations

Detection of CTX-M-1 extended-spectrum beta-lactamase among ceftiofur-resistant Salmonella enterica clinical isolates of poultry

Denagamage, T. N., Wallner-Pendleton, E. A., Jayarao, B. M., Xiaoli, L., Dudley, E. G., Wolfgang, D. & Kariyawasam, S., Sep 1 2019, In : Journal of Veterinary Diagnostic Investigation. 31, 5, p. 681-687 7 p.

Research output: Contribution to journalArticle