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Research Output 1968 2020

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Article
2020

Composite score analysis for unsupervised comparison and network visualization of metabolomics data

Kellogg, J. J., Kvalheim, O. M. & Cech, N. B., Jan 25 2020, In : Analytica Chimica Acta. 1095, p. 38-47 10 p.

Research output: Contribution to journalArticle

Metabolomics
Hydrastis
Principal Component Analysis
visualization
Visualization

Detection and removal of biologically active organic micropollutants from hospital wastewater

Castillo Meza, L., Piotrowski, P., Farnan, J., Tasker, T. L., Xiong, B., Weggler, B., Murrell, K., Dorman, F. L., Vanden Heuvel, J. P. & Burgos, W. D., Jan 15 2020, In : Science of the Total Environment. 700, 134469.

Research output: Contribution to journalArticle

Wastewater
wastewater
liquid
Impurities
Liquids
2019

Acute phase protein, α – 1- acid glycoprotein (AGP-1), has differential effects on TLR-2 and TLR-4 mediated responses

Sumanth, M. S., Abhilasha, K. V., Jacob, S. P., Chaithra, V. H., Basrur, V., Willard, B., McIntyre, T. M., Prabhu, K. S. & Marathe, G. K., Sep 2019, In : Immunobiology. 224, 5, p. 672-680 9 p.

Research output: Contribution to journalArticle

Acute-Phase Proteins
Sepsis
Glycoproteins
Ligands
Acids

A defined antigen skin test for the diagnosis of bovine tuberculosis

Srinivasan, S., Jones, G., Veerasami, M., Steinbach, S., Holder, T., Zewude, A., Fromsa, A., Ameni, G., Easterling, L., Bakker, D., Juleff, N., Gifford, G., Hewinson, R. G., Martin Vordermeier, H. & Kapur, V., Jul 17 2019, In : Science Advances. 5, 7, eaax4899.

Research output: Contribution to journalArticle

Open Access
tuberculosis
antigens
animals
surveillance
peptides
1 Citation (Scopus)

Angiomotin-like 1 links paramyxovirus M proteins to NEDD4 family ubiquitin ligases

Ray, G., Schmitt, P. T. & Schmitt, A. P., Feb 2019, In : Viruses. 11, 2, 128.

Research output: Contribution to journalArticle

Ligases
Ubiquitin
Parainfluenza Virus 5
Proteins
Endosomal Sorting Complexes Required for Transport

Antimicrobial resistance among escherichia coli isolated from veal calf operations in Pennsylvania

Salaheen, S., Kim, S. W., Cao, H., Wolfgang, D. R., Hovingh, E. P., Karns, J. S., Haley, B. J. & Van Kessel, J. A. S., Jan 1 2019, In : Foodborne pathogens and disease. 16, 1, p. 74-80 7 p.

Research output: Contribution to journalArticle

veal calves
antibiotic resistance
auctions
Escherichia coli
farms

A probe-based real-time PCR assay for the detection of Neospora caninum in clinical samples from cattle

Barry, R., Nissly, R. H., Feria, W., Thirumalapura, N., Tewari, D., Jayarao, B. M. & Kuchipudi, S. V., May 1 2019, In : Veterinary Parasitology. 269, p. 2-6 5 p.

Research output: Contribution to journalArticle

Neospora
Neospora caninum
Real-Time Polymerase Chain Reaction
quantitative polymerase chain reaction
abortion (animals)
2 Citations (Scopus)

A random subset implementation of weighted quantile sum (WQSRS) regression for analysis of high-dimensional mixtures

Curtin, P., Kellogg, J., Cech, N. & Gennings, C., Jan 1 2019, (Accepted/In press) In : Communications in Statistics: Simulation and Computation.

Research output: Contribution to journalArticle

Quantile
High-dimensional
Regression
Subset
Specificity

Assessment of a commercially available serum pregnancy-specific protein B test in free-ranging elk (Cervus canadensis) in Pennsylvania, USA

Seixas, J. S., Jayarao, B. M., Banfield, J. E., Johnson, J. B. & Brown, J. D., Oct 2019, In : Journal of wildlife diseases. 55, 4, p. 912-916 5 p.

Research output: Contribution to journalArticle

Cervus elaphus canadensis
elks
pregnancy
serum
protein
1 Citation (Scopus)

Associations of postpartum lying time with culling, milk yield, cyclicity, and reproductive performance of lactating dairy cows

Piñeiro, J. M., Menichetti, B. T., Barragan, A., Relling, A. E., Weiss, W. P., Bas, S. & Schuenemann, G. M., Apr 1 2019, In : Journal of dairy science. 102, 4, p. 3362-3375 14 p.

Research output: Contribution to journalArticle

culling (animals)
Periodicity
periodicity
Postpartum Period
milk yield
2 Citations (Scopus)

Associations of pre- and postpartum lying time with metabolic, inflammation, and health status of lactating dairy cows

Piñeiro, J. M., Menichetti, B. T., Barragan, A., Relling, A. E., Weiss, W. P., Bas, S. & Schuenemann, G. M., Apr 1 2019, In : Journal of dairy science. 102, 4, p. 3348-3361 14 p.

Research output: Contribution to journalArticle

health status
Postpartum Period
Health Status
Milk
dairy cows
4 Citations (Scopus)

Berberine directly affects the gut microbiota to promote intestinal farnesoid X receptor activation

Tian, Y., Cai, J., Gui, W., Nichols, R. G., Koo, I., Zhang, J., Anitha, M. & Patterson, A. D., Feb 2019, In : Drug Metabolism and Disposition. 47, 2, p. 86-93 8 p.

Research output: Contribution to journalArticle

Berberine
Bacteria
choloylglycine hydrolase
Metabolomics
Bile Acids and Salts

Complete genome sequences of 20 nontyphoidal Salmonella isolates from Rwanda

Byukusenge, M., Li, L., Uwanyirigira, M., Vepachedu, V. R., Kariyawasam, S., Nzayirambaho, M., Kuchipudi, S. V. & Jayarao, B. M., Mar 21 2019, In : Microbiology Resource Announcements. 8, 12, e00016-19.

Research output: Contribution to journalArticle

Open Access
Rwanda
Salmonella enterica
Salmonella
Bacterial Chromosomes
Genome

Complete genome sequences of Newcastle disease virus isolates from backyard chickens in northern India

Maan, S., Mor, S. K., Jindal, N., Joshi, V. G., Ravishankar, C., Singh, V. K., Ravindran, R., Sahoo, N., Radzio-Basu, J., Schilling, M. A., McVey, W. R., Mahajan, N. K., Kapur, V. & Goyal, S. M., Jan 1 2019, In : Microbiology Resource Announcements. 8, 27, e00467-19.

Research output: Contribution to journalArticle

Open Access
Newcastle disease virus
India
Chickens
Genotype
Genome
1 Citation (Scopus)

Conserved, breed-dependent, and subline-dependent innate immune responses of Fayoumi and Leghorn chicken embryos to Newcastle disease virus infection

Schilling, M. A., Memari, S., Cavanaugh, M., Katani, R., Deist, M. S., Radzio-Basu, J., Lamont, S. J., Buza, J. J. & Kapur, V., Dec 1 2019, In : Scientific reports. 9, 1, 7209.

Research output: Contribution to journalArticle

Open Access
Newcastle disease virus
Virus Diseases
Innate Immunity
Chickens
Embryonic Structures

Cross Sectional Study and Risk Factors Analysis of Francisella tularensis in Soil Samples in Punjab Province of Pakistan

Muhammad, J., Rabbani, M., Shabbir, M. Z., Muhammad, K., Ghori, M. T., Chaudhry, H. R., Hassnain, Z. U., Jamil, T., Abbas, T., Chaudhry, M. H., Haisem-Ur-Rasool, M., Ali, M. A., Nisar, M., Kirimanjeswara, G. S. & Jayarao, B. M., Jan 1 2019, In : Frontiers in Cellular and Infection Microbiology. 9, APR, 089.

Research output: Contribution to journalArticle

Open Access
Francisella tularensis
Pakistan
Statistical Factor Analysis
Soil
Cross-Sectional Studies

Crth2 receptor signaling down-regulates lipopolysaccharide-induced NF-κB activation in murine macrophages via changes in intracellular calcium

Diwakar, B. T., Yoast, R., Nettleford, S., Qian, F., Lee, T. J., Berry, S., Huffnagle, I., Rossi, R. M., Trebak, M., Paulson, R. F. & Prabhu, K. S., Nov 1 2019, In : FASEB journal : official publication of the Federation of American Societies for Experimental Biology. 33, 11, p. 12838-12852 15 p.

Research output: Contribution to journalArticle

Macrophages
Lipopolysaccharides
Down-Regulation
Chemical activation
Prostaglandins

Detection of CTX-M-1 extended-spectrum beta-lactamase among ceftiofur-resistant Salmonella enterica clinical isolates of poultry

Denagamage, T. N., Wallner-Pendleton, E. A., Jayarao, B. M., Xiaoli, L., Dudley, E. G., Wolfgang, D. & Kariyawasam, S., Sep 1 2019, In : Journal of Veterinary Diagnostic Investigation. 31, 5, p. 681-687 7 p.

Research output: Contribution to journalArticle

ceftiofur
beta-lactamase
Salmonella enterica
beta-Lactamases
Poultry

Diversity of Extended-Spectrum Cephalosporin-Resistant Escherichia coli in Feces from Calves and Cows on Pennsylvania Dairy Farms

Salaheen, S., Cao, H., Sonnier, J. L., Kim, S. W., Del Collo, L. P., Hovingh, E. P., Karns, J. S., Haley, B. J. & Van Kessel, J. A. S., May 1 2019, In : Foodborne pathogens and disease. 16, 5, p. 368-370 3 p.

Research output: Contribution to journalArticle

cephalosporins
Cephalosporins
Feces
dairy farming
feces
1 Citation (Scopus)

Downregulation of CD73 associates with T cell exhaustion in AML patients

Kong, Y., Jia, B., Zhao, C., Claxton, D., Sharma, A., Annageldiyev, C., Fotos, J., Zeng, H., Paulson, R., Prabhu, K. S. & Zheng, H., Apr 24 2019, In : Journal of Hematology and Oncology. 12, 1, 40.

Research output: Contribution to journalArticle

Open Access
Acute Myeloid Leukemia
Down-Regulation
T-Lymphocytes
Adenosine
Neoplasms
1 Citation (Scopus)
Protein Isoforms
Phosphotransferases
Growth
Neoplasms
Drosophila
1 Citation (Scopus)
Transesophageal Echocardiography
Swine
Equipment and Supplies
Law Enforcement
Sus scrofa

Evaluating the structural complexity of isomeric bile acids with ion mobility spectrometry

Zheng, X., Smith, F. B., Aly, N. A., Cai, J., Smith, R. D., Patterson, A. D. & Baker, E. S., Jul 19 2019, In : Analytical and Bioanalytical Chemistry. 411, 19, p. 4673-4682 10 p.

Research output: Contribution to journalArticle

Bile Acids and Salts
Spectrometry
Spectrum Analysis
Ions
Isomers

Gab2 and Gab3 redundantly suppress colitis by modulating macrophage and CD8+ T-cell activation

Wang, Z., Vaughan, T. Y., Zhu, W., Chen, Y., Fu, G., Medrzycki, M., Nishio, H., Bunting, S. T., Hankey-Giblin, P. A., Nusrat, A., Parkos, C. A., Wang, D., Wen, R. & Bunting, K. D., Jan 1 2019, In : Frontiers in immunology. 10, MAR, 486.

Research output: Contribution to journalArticle

Open Access
Colitis
Macrophages
T-Lymphocytes
Knockout Mice
Rectal Prolapse
2 Citations (Scopus)

Gdf15 regulates murine stress erythroid progenitor proliferation and the development of the stress erythropoiesis niche

Hao, S., Xiang, J., Wu, D. C., Fraser, J. W., Ruan, B., Cai, J., Patterson, A. D., Lai, Z. C. & Paulson, R. F., Jul 23 2019, In : Blood Advances. 3, 14, p. 2205-2217 13 p.

Research output: Contribution to journalArticle

Open Access
Growth Differentiation Factor 15
Erythropoiesis
Erythroid Cells
Monocytes
Homeostasis
1 Citation (Scopus)
Open Access
Phytoestrogens
plant estrogens
National Health and Nutrition Examination Survey
Genistein
Nutrition Surveys

Heat shock protein 70 (Hsp70) mediates Zika virus entry, replication, and egress from host cells

Pujhari, S., Brustolin, M., Macias, V. M., Nissly, R. H., Nomura, M., Kuchipudi, S. V. & Rasgon, J. L., Jan 1 2019, In : Emerging Microbes and Infections. 8, 1, p. 8-16 9 p.

Research output: Contribution to journalArticle

Open Access
Virus Release
Virus Internalization
HSP70 Heat-Shock Proteins
Virus Replication
Viral RNA

Identification of Sero-Diagnostic Antigens for the Early Diagnosis of Johne’s Disease using MAP Protein Microarrays

Li, L., Bannantine, J. P., Campo, J. J., Randall, A., Grohn, Y. T., Schilling, M. A., Katani, R., Radzio-Basu, J., Easterling, L. & Kapur, V., Dec 1 2019, In : Scientific reports. 9, 1, 17573.

Research output: Contribution to journalArticle

Open Access
Paratuberculosis
Protein Array Analysis
Early Diagnosis
Antigens
Infection

IMAP: An integrated bioinformatics and visualization pipeline for microbiome data analysis

Buza, T. M., Tonui, T., Stomeo, F., Tiambo, C., Katani, R., Schilling, M., Lyimo, B., Gwakisa, P., Cattadori, I., Buza, J. & Kapur, V., Jul 3 2019, In : BMC bioinformatics. 20, 1, 374.

Research output: Contribution to journalArticle

Open Access
Microbiota
Bioinformatics
Computational Biology
Data analysis
Visualization
2 Citations (Scopus)

Inflammation induces stress erythropoiesis through heme-dependent activation of SPI-C

Bennett, L. F., Liao, C., Quickel, M. D., Yeoh, B. S., Vijay-Kumar, M., Hankey-Giblin, P., Prabhu, K. S. & Paulson, R. F., Sep 10 2019, In : Science signaling. 12, 598, eaap7336.

Research output: Contribution to journalArticle

Erythropoiesis
Heme
Chemical activation
Inflammation
Toll-Like Receptors

Innate immune genes associated with newcastle disease virus load in chick embryos from inbred and outbred lines

Schilling, M. A., Memari, S., Cattadori, I., Katani, R., Muhairwa, A. P., Buza, J. J. & Kapur, V., Jan 1 2019, In : Frontiers in Microbiology. 10, JUN, 1432.

Research output: Contribution to journalArticle

Open Access
Newcastle disease virus
Chick Embryo
Ecotype
Genes
Chickens
Agaricus
Aryl Hydrocarbon Receptors
Agaricus bisporus
Agaricales
Hydrocarbons
1 Citation (Scopus)

Metabolomic Approaches Reveal the Role of CAR in Energy Metabolism

Chen, F., Coslo, D. M., Chen, T., Zhang, L., Tian, Y., Smith, P. B., Patterson, A. D. & Omiecinski, C. J., Jan 4 2019, In : Journal of Proteome Research. 18, 1, p. 239-251 13 p.

Research output: Contribution to journalArticle

Metabolomics
Energy Metabolism
Fatty Acids
Chemical activation
Glucose
1 Citation (Scopus)

Metagenomic analysis of the fecal microbiomes from Escherichia coli O157:H7-shedding and non-shedding cows on a single dairy farm

Salaheen, S., Kim, S. W., Karns, J. S., Hovingh, E. P., Haley, B. J. & Van Kessel, J. A. S., Aug 1 2019, In : Food Control. 102, p. 76-80 5 p.

Research output: Contribution to journalArticle

Metagenome
Metagenomics
Escherichia coli O157
Microbiota
dairy farming

Microbial Diversity in Bushmeat Samples Recovered from the Serengeti Ecosystem in Tanzania

Katani, R., Schilling, M. A., Lyimo, B., Tonui, T., Cattadori, I. M., Eblate, E., Martin, A., Estes, A. B., Buza, T., Rentsch, D., Davenport, K. W., Hovde, B. T., Lyimo, S., Munuo, L., Stomeo, F., Tiambo, C., Radzio-Basu, J., Mosha, F., Hudson, P. J., Buza, J. J. & 1 others, Kapur, V., Dec 1 2019, In : Scientific reports. 9, 1, 18086.

Research output: Contribution to journalArticle

Open Access
Tanzania
Microbiota
Ecosystem
Africa South of the Sahara
Zoonoses
7 Citations (Scopus)

Microbiota fermentation-NLRP3 axis shapes the impact of dietary fibres on intestinal inflammation

Singh, V., Yeoh, B. S., Walker, R. E., Xiao, X., Saha, P., Golonka, R. M., Cai, J., Bretin, A. C. A., Cheng, X., Liu, Q., Flythe, M. D., Chassaing, B., Shearer, G. C., Patterson, A. D., Gewirtz, A. T. & Vijay-Kumar, M., Oct 1 2019, In : Gut. 68, 10, p. 1801-1812 12 p.

Research output: Contribution to journalArticle

Microbiota
Dietary Fiber
Colitis
Fermentation
Butyrates
3 Citations (Scopus)

Microbiota Metabolism Promotes Synthesis of the Human Ah Receptor Agonist 2,8-Dihydroxyquinoline

Hubbard, T. D., Liu, Q., Murray, I. A., Dong, F., Miller, C., Smith, P. B., Gowda, K., Lin, J. M., Amin, S., Patterson, A. D. & Perdew, G. H., Apr 5 2019, In : Journal of Proteome Research. 18, 4, p. 1715-1724 10 p.

Research output: Contribution to journalArticle

Aryl Hydrocarbon Receptors
Microbiota
Metabolism
Hydroxyquinolines
Chemical activation

Niveles de fósforo y sus efectos sobre el crecimiento y consumo en alpacas hembras en los Andes peruanos

Translated title of the contribution: Phosphorus levels and their effects on growth and intake in female alpacas in the Peruvian AndesCarlos Quispe, E., Edith Ancco, G., van Saun, R. & Carlos Gómez, B., Jan 1 2019, In : Revista de Investigaciones Veterinarias del Peru. 30, 2, p. 655-662 8 p.

Research output: Contribution to journalArticle

Open Access
New World Camelids
alpacas
Phosphorus
phosphorus
Growth
3 Citations (Scopus)

Nutrient Sensing in CD11c Cells Alters the Gut Microbiota to Regulate Food Intake and Body Mass

Chagwedera, D. N., Ang, Q. Y., Bisanz, J. E., Leong, Y. A., Ganeshan, K., Cai, J., Patterson, A. D., Turnbaugh, P. J. & Chawla, A., Aug 6 2019, In : Cell Metabolism. 30, 2, p. 364-373.e7

Research output: Contribution to journalArticle

Microbiota
Eating
Appetite Regulation
Food
Body Weight
5 Citations (Scopus)

Opportunities and Limitations for Untargeted Mass Spectrometry Metabolomics to Identify Biologically Active Constituents in Complex Natural Product Mixtures

Caesar, L. K., Kellogg, J., Kvalheim, O. M. & Cech, N. B., Mar 22 2019, In : Journal of Natural Products. 82, 3, p. 469-484 16 p.

Research output: Contribution to journalArticle

Metabolomics
Biological Products
Mass spectrometry
Mass Spectrometry
Biosynthetic Pathways

p38 MAP-kinase inhibitor protects against platelet-activating factor-induced death in mice

Abhilasha, K. V., Sumanth, M. S., Chaithra, V. H., Jacob, S. P., Thyagarajan, A., Sahu, R. P., Rajaiah, R., Prabhu, K. S., Kemparaju, K., Travers, J. B., Chen, C. H. & Marathe, G. K., Nov 1 2019, In : Free Radical Biology and Medicine. 143, p. 275-287 13 p.

Research output: Contribution to journalArticle

Platelet Activating Factor
p38 Mitogen-Activated Protein Kinases
Oxidative stress
Disseminated Intravascular Coagulation
WEB 2086
1 Citation (Scopus)

Pastoral production is associated with increased peste des petits ruminants seroprevalence in northern Tanzania across sheep, goats and cattle

Herzog, C. M., de Glanville, W. A., Willett, B. J., Kibona, T. J., Cattadori, I. M., Kapur, V., Hudson, P. J., Buza, J., Cleaveland, S. & Bjørnstad, O. N., Jan 1 2019, In : Epidemiology and Infection. 147, e242.

Research output: Contribution to journalArticle

Open Access
Peste-des-Petits-Ruminants
Tanzania
Seroepidemiologic Studies
Goats
Sheep

PCB126 blocks the thermogenic beiging response of adipocytes

Gourronc, F. A., Perdew, G. H., Robertson, L. W. & Klingelhutz, A. J., Jan 1 2019, (Accepted/In press) In : Environmental Science and Pollution Research.

Research output: Contribution to journalArticle

Polychlorinated Biphenyls
Polychlorinated biphenyls
Adipocytes
Indican
PCB

Regulatory mechanisms mediated by peroxisome proliferator-activated receptor-β/δ in skin cancer

Peters, J. M., Kim, D. J., Bility, M. T., Borland, M. G., Zhu, B. & Gonzalez, F. J., Jan 1 2019, In : Molecular Carcinogenesis. 58, 9, p. 1612-1622 11 p.

Research output: Contribution to journalArticle

Peroxisome Proliferator-Activated Receptors
Skin Neoplasms
Keratinocytes
Endoplasmic Reticulum Stress
Cell Aging
2 Citations (Scopus)

Retinoic acid mediated clearance of Citrobacter rodentium in vitamin A deficient mice requires CD11b+ and T cells

Snyder, L. M., McDaniel, K. L., Tian, Y., Wei, C. H., Kennett, M. J., Patterson, A. D., Catharine Ross, A. & Cantorna, M. T., Jan 1 2019, In : Frontiers in immunology. 10, JAN

Research output: Contribution to journalArticle

Citrobacter rodentium
Tretinoin
Vitamin A
T-Lymphocytes
Interleukin-17
1 Citation (Scopus)

Role of Selenoproteins in Bacterial Pathogenesis

Sumner, S. E., Markley, R. L. & Kirimanjeswara, G. S., Nov 1 2019, In : Biological Trace Element Research. 192, 1, p. 69-82 14 p.

Research output: Contribution to journalArticle

Selenoproteins
Selenium
Microbiota
Selenocysteine
Pathogens

Selective Ah receptor modulators attenuate NPC1L1-mediated cholesterol uptake through repression of SREBP-2 transcriptional activity

Muku, G. E., Kusnadi, A., Kuzu, G., Tanos, R., Murray, I. A., Gowda, K., Amin, S. & Perdew, G. H., Jan 1 2019, (Accepted/In press) In : Laboratory Investigation.

Research output: Contribution to journalArticle

Sterol Regulatory Element Binding Protein 2
Aryl Hydrocarbon Receptors
Cholesterol
Ligands
Genes
1 Citation (Scopus)

Selenium-rich maize modulates the expression of prostaglandin genes in lipopolysaccharide-stimulated RAW264.7 macrophages

Dhanjal, N. I., Sharma, S., Skalny, A. V., Skalnaya, M. G., Ajsuvakova, O. P., Tinkov, A. A., Zhang, F., Guo, X., Prabhu, K. S. & Tejo Prakash, N., May 2019, In : Food and Function. 10, 5, p. 2839-2846 8 p.

Research output: Contribution to journalArticle

prostaglandin synthase
Selenium
lipopolysaccharides
prostaglandins
selenium

Selenoproteome Identification in Inflamed Murine Primary Bone Marrow-Derived Macrophages by Nano-LC Orbitrap Fusion Tribrid Mass Spectrometry

Korwar, A. M., Shay, A. E., Basrur, V., Conlon, K. & Prabhu, K. S., Jul 15 2019, In : Journal of the American Society for Mass Spectrometry. 30, 7, p. 1276-1283 8 p.

Research output: Contribution to journalArticle

Selenocysteine
Macrophages
Selenoproteins
Mass spectrometry
Mass Spectrometry

Short communication: Assessment of biomarkers of inflammation in the vaginal discharge of postpartum dairy cows diagnosed with clinical metritis

Barragan, A., Lakritz, J., Carman, M. K., Bas, S., Hovingh, E. P. & Schuenemann, G. M., Aug 1 2019, In : Journal of dairy science. 102, 8, p. 7469-7475 7 p.

Research output: Contribution to journalArticle

Vaginal Discharge
Haptoglobins
haptoglobins
endometritis
animal communication