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19982022

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Personal profile

Expertise related to UN Sustainable Development Goals

In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):

  • SDG 3 - Good Health and Well-being
  • SDG 9 - Industry, Innovation, and Infrastructure

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  • Detection of SARS-CoV-2 intra-host recombination during superinfection with Alpha and Epsilon variants in New York City

    Wertheim, J. O., Wang, J. C., Leelawong, M., Martin, D. P., Havens, J. L., Chowdhury, M. A., Pekar, J. E., Amin, H., Arroyo, A., Awandare, G. A., Chow, H. Y., Gonzalez, E., Luoma, E., Morang’a, C. M., Nekrutenko, A., Shank, S. D., Silver, S., Quashie, P. K., Rakeman, J. L., Ruiz, V., & 4 othersTorian, L. V., Vasylyeva, T. I., Kosakovsky Pond, S. L. & Hughes, S., Dec 2022, In: Nature communications. 13, 1, 3645.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    3 Scopus citations
  • Selection Analysis Identifies Clusters of Unusual Mutational Changes in Omicron Lineage BA.1 That Likely Impact Spike Function

    Martin, D. P., Lytras, S., Lucaci, A. G., Maier, W., Grüning, B., Shank, S. D., Weaver, S., MacLean, O. A., Orton, R. J., Lemey, P., Boni, M. F., Tegally, H., Harkins, G. W., Scheepers, C., Bhiman, J. N., Everatt, J., Amoako, D. G., San, J. E., Giandhari, J., Sigal, A., & 18 othersWilliamson, C., Hsiao, N. Y., Von Gottberg, A., De Klerk, A., Shafer, R. W., Robertson, D. L., Wilkinson, R. J., Sewell, B. T., Lessells, R., Nekrutenko, A., Greaney, A. J., Starr, T. N., Bloom, J. D., Murrell, B., Wilkinson, E., Gupta, R. K., De Oliveira, T. & Pond, S. L. K., 2022, In: Molecular biology and evolution. 39, 4, msac061.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    11 Scopus citations
  • The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update

    Afgan, E., Nekrutenko, A., Grüning, B. A., Blankenberg, D., Goecks, J., Schatz, M. C., Ostrovsky, A. E., Mahmoud, A., Lonie, A. J., Syme, A., Fouilloux, A., Bretaudeau, A., Nekrutenko, A., Kumar, A., Eschenlauer, A. C., Desanto, A. D., Guerler, A., Serrano-Solano, B., Batut, B., Grüning, B. A., & 86 othersLanghorst, B. W., Carr, B., Raubenolt, B. A., Hyde, C. J., Bromhead, C. J., Barnett, C. B., Royaux, C., Gallardo, C., Blankenberg, D. J., Fornika, D. J., Baker, D., Bouvier, D., Clements, D., De Lima Morais, D. A., Tabernero, D. L., Lariviere, D., Nasr, E., Afgan, E., Zambelli, F., Heyl, F., Psomopoulos, F., Coppens, F., Price, G. R., Cuccuru, G., Corguillé, G. L., Von Kuster, G., Akbulut, G. G., Rasche, H., Hans-Rudolf, H., Eguinoa, I., Makunin, I., Ranawaka, I. J., Taylor, J. P., Joshi, J., Hillman-Jackson, J., Goecks, J., Chilton, J. M., Kamali, K., Suderman, K., Poterlowicz, K., Yvan, L. B., Lopez-Delisle, L., Sargent, L., Bassetti, M. E., Tangaro, M. A., Van Den Beek, M., Cech, M., Bernt, M., Fahrner, M., Tekman, M., Föll, M. C., Schatz, M. C., Crusoe, M. R., Roncoroni, M., Kucher, N., Coraor, N., Stoler, N., Rhodes, N., Soranzo, N., Pinter, N., Goonasekera, N. A., Moreno, P. A., Videm, P., Melanie, P., Mandreoli, P., Jagtap, P. D., Gu, Q., Weber, R. J. M., Lazarus, R., Vorderman, R. H. P., Hiltemann, S., Golitsynskiy, S., Garg, S., Bray, S. A., Gladman, S. L., Leo, S., Mehta, S. P., Griffin, T. J., Jalili, V., Yves, V., Wen, V., Nagampalli, V. K., Bacon, W. A., De Koning, W., Maier, W. & Briggs, P. J., Jul 5 2022, In: Nucleic acids research. 50, W1, p. W345-W351

    Research output: Contribution to journalArticlepeer-review

    Open Access
    5 Scopus citations
  • A single-cell RNA-sequencing training and analysis suite using the Galaxy framework

    Tekman, M., Batut, B., Ostrovsky, A., Antoniewski, C., Clements, D., Ramirez, F., Etherington, G. J., Hotz, H. R., Scholtalbers, J., Manning, J. R., Bellenger, L., Doyle, M. A., Heydarian, M., Huang, N., Soranzo, N., Moreno, P., Mautner, S., Papatheodorou, I., Nekrutenko, A., Taylor, J., & 3 othersBlankenberg, D., Backofen, R. & Gruning, B., 2021, In: GigaScience. 9, 10, giaa102.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    1 Scopus citations
  • Erratum: Increased yields of duplex sequencing data by a series of quality control tools (NAR Genomics and Bioinformatics DOI: 10.1093/nar/lqab002)

    Povysil, G., Heinzl, M., Salazar, R., Stoler, N., Nekrutenko, A. & Tiemann-Boege, I., Mar 1 2021, In: NAR Genomics and Bioinformatics. 3, 1, lqab014.

    Research output: Contribution to journalComment/debatepeer-review

    Open Access
    2 Scopus citations