If you made any changes in Pure these will be visible here soon.

Research Output

2007
6 Scopus citations
2008

A computational approach to the functional clustering of periodic gene-expression profiles

Kim, B. R., Zhang, L., Berg, A., Fan, J. & Wu, R., Oct 1 2008, In : Genetics. 180, 2, p. 821-834 14 p.

Research output: Contribution to journalArticle

30 Scopus citations

A statistical model for testing the pleiotropic control of phenotypic plasticity for a count trait

Ma, C. X., Yu, Q., Berg, A., Drost, D., Novaes, E., Fu, G., Yap, J. S., Tan, A., Kirst, M., Cui, Y. & Wu, R., May 1 2008, In : Genetics. 179, 1, p. 627-636 10 p.

Research output: Contribution to journalArticle

11 Scopus citations

Multivariate lag-windows and group representations

Berg, A., Nov 1 2008, In : Journal of Multivariate Analysis. 99, 10, p. 2479-2496 18 p.

Research output: Contribution to journalArticle

2 Scopus citations

On effect-measure modification: Relationships among changes in the relative risk, odds ratio, and risk difference

Brumback, B. & Berg, A., Aug 15 2008, In : Statistics in Medicine. 27, 18, p. 3453-3465 13 p.

Research output: Contribution to journalArticle

20 Scopus citations
2009

An occupancy problem arising in power law fitting

Abramson, I. & Berg, A., Jan 1 2009, In : Internet Mathematics. 6, 1, p. 19-28 10 p.

Research output: Contribution to journalArticle

4 Scopus citations

Cdf and survival function estimation with infinite-order kernels

Berg, A. & Politis, D., Jan 1 2009, In : Electronic Journal of Statistics. 3, p. 1436-1454 19 p.

Research output: Contribution to journalArticle

9 Scopus citations

Computing genetic imprinting expressed by haplotypes.

Cheng, Y., Berg, A., Wu, S., Li, Y. & Wu, R., 2009, In : Methods in molecular biology (Clifton, N.J.). 573, p. 189-212 24 p.

Research output: Contribution to journalReview article

4 Scopus citations

Development of 16 polymorphic simple sequence repeat markers for Lycoris longituba from expressed sequence tags

He, Q., Shen, Y., Chen, Y., Zhou, Y., Berg, A., Wu, R. & Huang, M., Jan 1 2009, In : Molecular Ecology Resources. 9, 1, p. 278-280 3 p.

Research output: Contribution to journalArticle

4 Scopus citations

Discussion: Why do we test multiple traits in genetic association studies?

Wu, R., Berg, A. & Li, Q., Mar 1 2009, In : Journal of the Korean Statistical Society. 38, 1, p. 11-13 3 p.

Research output: Contribution to journalArticle

Higher-order accurate polyspectral estimation with flat-top lag-windows

Berg, A. & Politis, D. N., Jun 1 2009, In : Annals of the Institute of Statistical Mathematics. 61, 2, p. 477-498 22 p.

Research output: Contribution to journalArticle

4 Scopus citations

Modeling genetic imprinting effects of DNA sequences with multilocus polymorphism data

Wen, S., Wang, C., Berg, A., Li, Y., Chang, M. M., Fillingim, R. B., Wallace, M. R., Staud, R., Kaplan, L. & Wu, R., Aug 11 2009, In : Algorithms for Molecular Biology. 4, 1, 1 p., 1748.

Research output: Contribution to journalArticle

7 Scopus citations

Multilocus genomics of outcrossing plant populations

Hou, W., Liu, T., Li, Y., Li, Q., Li, J., Das, K., Berg, A. & Wu, R., Aug 1 2009, In : Theoretical Population Biology. 76, 1, p. 68-76 9 p.

Research output: Contribution to journalArticle

13 Scopus citations

Network models for dissecting plant development by functional mapping

Wu, S., Yap, J. S., Li, Y., Li, Q., Fu, G., Li, J., Das, K., Berg, A., Zeng, Y. & Wu, R., Sep 1 2009, In : Current Bioinformatics. 4, 3, p. 183-187 5 p.

Research output: Contribution to journalReview article

3 Scopus citations
2010

A bootstrap test for time series linearity

Berg, A., Paparoditis Efstathios, E. & Politis, D. N., Dec 1 2010, In : Journal of Statistical Planning and Inference. 140, 12, p. 3841-3857 17 p.

Research output: Contribution to journalArticle

17 Scopus citations

A statistical model for mapping morphological shape

Fu, G., Berg, A., Das, K., Li, J., Li, R. & Wu, R., Jul 5 2010, In : Theoretical Biology and Medical Modelling. 7, 1, 28.

Research output: Contribution to journalArticle

8 Scopus citations

Diversification in the genetic architecture of gene expression and transcriptional networks in organ differentiation of Populus

Drost, D. R., Benedict, C. I., Berg, A., Novaes, E., Novaes, C. R. D. B., Yu, Q., Dervinis, C., Maia, J. M., Yap, J., Miles, B. & Kirst, M., May 4 2010, In : Proceedings of the National Academy of Sciences of the United States of America. 107, 18, p. 8492-8497 6 p.

Research output: Contribution to journalArticle

47 Scopus citations

Functional clustering of periodic transcriptional profiles through ARMA(p,q)

Li, N., McMurry, T., Berg, A., Wang, Z., Berceli, S. A. & Wu, R., Sep 10 2010, In : PloS one. 5, 4, e9894.

Research output: Contribution to journalArticle

22 Scopus citations

Functional mapping of drug response with pharmacodynamic-pharmacokinetic principles

Ahn, K., Luo, J., Berg, A., Keefe, D. & Wu, R., Jul 1 2010, In : Trends in Pharmacological Sciences. 31, 7, p. 306-311 6 p.

Research output: Contribution to journalArticle

25 Scopus citations

Glucuronidation genotypes and nicotine metabolic phenotypes: Importance of functional UGT2B10 and UGT2B17 polymorphisms

Chen, G., Giambrone, N. E., Dluzen, D. F., Muscat, J. E., Berg, A., Gallagher, C. J. & Lazarus, P., Oct 1 2010, In : Cancer Research. 70, 19, p. 7543-7552 10 p.

Research output: Contribution to journalArticle

49 Scopus citations

Mapping genes for plant structure, development and evolution: functional mapping meets ontology

He, Q., Berg, A., Li, Y., Vallejos, C. E. & Wu, R., Jan 1 2010, In : Trends in Genetics. 26, 1, p. 39-46 8 p.

Research output: Contribution to journalReview article

30 Scopus citations

Modeling the aneuploidy control of cancer

Li, Y., Berg, A., Wu, L. R., Wang, Z., Chen, G. & Wu, R., Jul 1 2010, In : BMC Cancer. 10, 346.

Research output: Contribution to journalArticle

4 Scopus citations

Modeling the genetic etiology of pharmacokinetic-pharmacodynamic links with the ARMA process

Lin, M., Berg, A. & Wu, R., Mar 1 2010, In : Journal of Biopharmaceutical Statistics. 20, 2, p. 351-372 22 p.

Research output: Contribution to journalArticle

2 Scopus citations

NOD2/CARD15 Mutations correlate with severe pouchitis after ileal pouch-anal anastomosis

Sehgal, R., Berg, A., Hegarty, J. P., Kelly, A. A., Lin, Z., Poritz, L. S. & Koltun, W. A., Nov 1 2010, In : Diseases of the colon and rectum. 53, 11, p. 1487-1494 8 p.

Research output: Contribution to journalArticle

43 Scopus citations

Subsampling p-values

Berg, A., McMurry, T. L. & Politis, D. N., Sep 1 2010, In : Statistics and Probability Letters. 80, 17-18, p. 1358-1364 7 p.

Research output: Contribution to journalArticle

6 Scopus citations

Trilocus disequilibrium analysis of multiallelic markers in outcrossing populations

Berg, A., He, Q., Shen, Y., Chen, Y., Huang, M. & Wu, R., Mar 8 2010, In : Statistical Applications in Genetics and Molecular Biology. 9, 1, 16.

Research output: Contribution to journalArticle

3 Scopus citations

Wavelet-based functional clustering for patterns of high-dimensional dynamic gene expression

Kim, B. R., McMurry, T., Zhao, W., Wu, R. & Berg, A., Aug 1 2010, In : Journal of Computational Biology. 17, 8, p. 1067-1080 14 p.

Research output: Contribution to journalArticle

9 Scopus citations
2011

A dynamic model for functional mapping of biological rhythms

Fu, G., Luo, J., Berg, A., Wang, Z., Li, J., Das, K., Li, R. & Wu, R., Jan 1 2011, In : Journal of Biological Dynamics. 5, 1, p. 84-101 18 p.

Research output: Contribution to journalArticle

7 Scopus citations

Association studies of excision repair cross-complementation group 1 (ERCC1) haplotypes with lung and head and neck cancer risk in a Caucasian population

Jones, N. R., Spratt, T. E., Berg, A. S., Muscat, J. E., Lazarus, P. & Gallagher, C. J., Apr 1 2011, In : Cancer Epidemiology. 35, 2, p. 175-181 7 p.

Research output: Contribution to journalArticle

13 Scopus citations

DLG5 P1371Q is associated with inflammatory bowel disease and complementary to R30Q in disease susceptibility

Lin, Z., Hegarty, J. P., Berg, A., Wang, Z., Kelly, A. A., Wang, Y., Poritz, L. S., Wu, R. & Koltun, W. A., Nov 1 2011, In : Swiss Medical Weekly. 141, NOVEMBER

Research output: Contribution to journalArticle

6 Scopus citations
127 Scopus citations

Functional mapping of expression quantitative trait loci that regulate oscillatory gene expression.

Berg, A., Li, N., Tong, C., Wang, Z., Berceli, S. A. & Wu, R., Jul 14 2011, In : Methods in molecular biology (Clifton, N.J.). 734, p. 241-255 15 p.

Research output: Contribution to journalArticle

4 Scopus citations

Genetic Variants and Monoallelic Expression of Surfactant Protein-D in Inflammatory Bowel Disease

Lin, Z., John, G., Hegarty, J. P., Berg, A., Yu, W., Wang, Y., Kelly, A. A., Peterson, B. Z., Poritz, L. S., Floros, J. & Koltun, W. A., Sep 1 2011, In : Annals of Human Genetics. 75, 5, p. 559-568 10 p.

Research output: Contribution to journalArticle

9 Scopus citations

NKX2-3 transcriptional regulation of endothelin-1 and VEGF signaling in human intestinal microvascular endothelial cells

Yu, W., Hegarty, J. P., Berg, A., Chen, X., West, G., Kelly, A. A., Wang, Y., Poritz, L. S., Koltun, W. A. & Lin, Z., May 31 2011, In : PloS one. 6, 5, e20454.

Research output: Contribution to journalArticle

15 Scopus citations

NKX2-3 variant rs11190140 is associated with IBD and alters binding of NFAT

John, G., Hegarty, J. P., Yu, W., Berg, A., Pastor, D. M., Kelly, A. A., Wang, Y., Poritz, L., Schreiber, S., Koltun, W. & Lin, Z., Sep 1 2011, In : Molecular Genetics and Metabolism. 104, 1-2, p. 174-179 6 p.

Research output: Contribution to journalArticle

15 Scopus citations

Plasma netrin-1 is a diagnostic biomarker of human cancers

Ramesh, G., Berg, A. & Jayakumar, C., Mar 1 2011, In : Biomarkers. 16, 2, p. 172-180 9 p.

Research output: Contribution to journalArticle

34 Scopus citations

Psychological health in patients with ALS is maintained as physical function declines

Cupp, J., Simmons, Z., Berg, A., Felgoise, S. H., Walsh, S. M. & Stephens, H. E., Jul 1 2011, In : Amyotrophic Lateral Sclerosis. 12, 4, p. 290-296 7 p.

Research output: Contribution to journalArticle

25 Scopus citations

Risk factors for surgical site infections after colorectal resection in diabetic patients

Sehgal, R., Berg, A., Figueroa, R., Poritz, L., McKenna, K., Stewart, D. & Koltun, W., Jan 1 2011, In : Journal of the American College of Surgeons. 212, 1, p. 29-34 6 p.

Research output: Contribution to journalArticle

51 Scopus citations

Risk factors for surgical site infections after colorectal resection in diabetic patients

Sehgal, R. S., Berg, A. & Figueroa, R., Nov 1 2011, In : Diseases of the colon and rectum. 54, 11

Research output: Contribution to journalComment/debate

24 Scopus citations

Tumor volume and percent positive lymph nodes as a predictor of 5-year survival in colorectal cancer

Poritz, L., Sehgal, R., Hartnett, K., Berg, A. & Koltun, W., Oct 1 2011, In : Surgery. 150, 4, p. 649-655 7 p.

Research output: Contribution to journalArticle

13 Scopus citations
2012

Circulating tumor cells in melanoma patients

Clawson, G. A., Kimchi, E., Patrick, S. D., Xin, P., Harouaka, R., Zheng, S., Berg, A., Schell, T., Staveley-O'Carroll, K. F., Neves, R. I., Mosca, P. J. & Thiboutot, D., Jul 19 2012, In : PloS one. 7, 7, e41052.

Research output: Contribution to journalArticle

45 Scopus citations

Comparison and evaluation of network clustering algorithms applied to genetic interaction networks

Hou, L., Wang, L., Berg, A., Qian, M., Zhu, Y., Li, F. & Deng, M., Jan 1 2012, In : Frontiers in Bioscience - Elite. 4 E, 6, p. 2150-2161 12 p.

Research output: Contribution to journalArticle

1 Scopus citations

Electronic cigarettes: A response to Leelavathi and das

Foulds, J., Veldheer, S. & Berg, A., Apr 1 2012, In : International Journal of Clinical Practice. 66, 4, p. 417-418 2 p.

Research output: Contribution to journalLetter

Functional Assessment of Human Coding Mutations Affecting Skin Pigmentation Using Zebrafish

Tsetskhladze, Z. R., Canfield, V. A., Ang, K. C., Wentzel, S. M., Reid, K. P., Berg, A. S., Johnson, S. L., Kawakami, K. & Cheng, K. C., Oct 10 2012, In : PloS one. 7, 10, e47398.

Research output: Contribution to journalArticle

30 Scopus citations

Genetic risk profiling and gene signature modeling to predict risk of complications after IPAA

Sehgal, R., Berg, A., Polinski, J. I., Hegarty, J. P., Lin, Z., McKenna, K., Stewart, D., Poritz, L. & Koltun, W., Mar 1 2012, In : Diseases of the Colon and Rectum. 55, 3, p. 239-248 10 p.

Research output: Contribution to journalArticle

23 Scopus citations
5 Scopus citations

Mutation in TAGAP is protective of anal sepsis in ileocolic crohn's disease

Connelly, T. M., Sehgal, R., Berg, A., Hegarty, J. P., Deiling, S., Stewart, D., Poritz, L. & Koltun, W., Nov 1 2012, In : Diseases of the Colon and Rectum. 55, 11, p. 1145-1152 8 p.

Research output: Contribution to journalArticle

8 Scopus citations

Mutations in IRGM are associated with more frequent need for surgery in patients with ileocolonic crohn's disease

Sehgal, R., Berg, A., Polinski, J. I., Hegarty, J. P., Lin, Z., McKenna, K. J., Stewart, D. B., Poritz, L. S. & Koltun, W. A., Feb 1 2012, In : Diseases of the colon and rectum. 55, 2, p. 115-121 7 p.

Research output: Contribution to journalArticle

33 Scopus citations