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Research Output

Article

Abdominal obesity and metabolic syndrome burden in adolescents-penn state children cohort study

He, F., Rodriguez-Colon, S., Fernandez-Mendoza, J., Vgontzas, A. N., Bixler, E. O., Berg, A., Imamura Kawasawa, Y., Sawyer, M. D. & Liao, D., Jan 1 2015, In : Journal of Clinical Densitometry. 18, 1, p. 30-36 7 p.

Research output: Contribution to journalArticle

29 Scopus citations

Aberrant over-expression of TRPM7 ion channels in pancreatic cancer: Required for cancer cell invasion and implicated in tumor growth and metastasis

Yee, N. S., Kazi, A. A., Li, Q., Yang, Z., Berg, A. & Yee, R. K., Jan 1 2015, In : Biology Open. 4, 4, p. 507-514 8 p.

Research output: Contribution to journalArticle

16 Scopus citations

A bootstrap test for time series linearity

Berg, A., Paparoditis Efstathios, E. & Politis, D. N., Dec 1 2010, In : Journal of Statistical Planning and Inference. 140, 12, p. 3841-3857 17 p.

Research output: Contribution to journalArticle

17 Scopus citations

A computational approach to the functional clustering of periodic gene-expression profiles

Kim, B. R., Zhang, L., Berg, A., Fan, J. & Wu, R., Oct 1 2008, In : Genetics. 180, 2, p. 821-834 14 p.

Research output: Contribution to journalArticle

30 Scopus citations

A dynamic model for functional mapping of biological rhythms

Fu, G., Luo, J., Berg, A., Wang, Z., Li, J., Das, K., Li, R. & Wu, R., Jan 1 2011, In : Journal of Biological Dynamics. 5, 1, p. 84-101 18 p.

Research output: Contribution to journalArticle

7 Scopus citations

An interleukin-4 polymorphism is associated with susceptibility to Clostridium difficile infection in patients with inflammatory bowel disease: Results of a retrospective cohort study

Connelly, T. M., Koltun, W., Sangster, W., Berg, A., Hegarty, J. P., Harris, L., Deiling, S. & Stewart, D., Oct 1 2014, In : Surgery (United States). 156, 4, p. 769-775 7 p., 3853.

Research output: Contribution to journalArticle

13 Scopus citations

An occupancy problem arising in power law fitting

Abramson, I. & Berg, A., Jan 1 2009, In : Internet Mathematics. 6, 1, p. 19-28 10 p.

Research output: Contribution to journalArticle

A Robustified Posterior for Bayesian Inference on a Large Number of Parallel Effects

Liao, J. G., Berg, A. & McMurry, T. L., Jan 1 2020, (Accepted/In press) In : American Statistician.

Research output: Contribution to journalArticle

A selenium containing inhibitor for the treatment of hepatocellular cancer

Tagaram, H. R. S., Desai, D., Li, G., Liu, D., Rountree, C. B., Gowda, K., Berg, A., Amin, S., Staveley-O’carroll, K. F. & Kimchi, E. T., Mar 24 2016, In : Pharmaceuticals. 9, 2, 18.

Research output: Contribution to journalArticle

6 Scopus citations

A single nucleotide polymorphism in the STAT5 gene favors colonic as opposed to small-bowel inflammation in crohn's disease

Connelly, T. M., Koltun, W., Berg, A., Hegarty, J. P., Brinton, D., Deiling, S., Poritz, L. & Stewart, D., Sep 1 2013, In : Diseases of the Colon and Rectum. 56, 9, p. 1068-1074 7 p.

Research output: Contribution to journalArticle

8 Scopus citations

Assessing the carcinogenic potential of low-dose exposures to chemical mixtures in the environment: The challenge ahead

Goodson, W. H., Lowe, L., Carpenter, D. O., Gilbertson, M., Ali, A. M., de Cerain Salsamendi, A. L., Lasfar, A., Carnero, A., Azqueta, A., Amedei, A., Charles, A. K., Collins, A. R., Ward, A., Salzberg, A. C., Colacci, A., Olsen, A. K., Berg, A., Barclay, B. J., Zhou, B. P., Blanco-Aparicio, C. & 153 others, Baglole, C. J., Dong, C., Mondello, C., Hsu, C. W., Naus, C. C., Yedjou, C., Curran, C. S., Laird, D. W., Koch, D. C., Carlin, D. J., Felsher, D. W., Roy, D., Brown, D. G., Ratovitski, E., Ryan, E. P., Corsini, E., Rojas, E., Moon, E. Y., Laconi, E., Marongiu, F., Al-Mulla, F., Chiaradonna, F., Darroudi, F., Martin, F. L., Van Schooten, F. J., Goldberg, G. S., Wagemaker, G., Nangami, G., Calaf, G. M., Williams, G., Wolf, G. T., Koppen, G., Brunborg, G., Kim Lyerly, H., Krishnan, H., Hamid, H. A., Yasaei, H., Sone, H., Kondoh, H., Salem, H. K., Hsu, H. Y., Park, H. H., Koturbash, I., Miousse, I. R., Ivana Scovassi, A., Klaunig, J. E., Vondráček, J., Raju, J., Roman, J., Wise, J. P., Whitfield, J. R., Woodrick, J., Christopher, J. A., Ochieng, J., Martinez-Leal, J. F., Weisz, J., Kravchenko, J., Sun, J., Prudhomme, K. R., Narayanan, K. B., Cohen-Solal, K. A., Moorwood, K., Gonzalez, L., Soucek, L., Jian, L., D'Abronzo, L. S., Lin, L. T., Li, L., Gulliver, L., McCawley, L. J., Memeo, L., Vermeulen, L., Leyns, L., Zhang, L., Valverde, M., Khatami, M., Romano, M. F., Chapellier, M., Williams, M. A., Wade, M., Manjili, M. H., Lleonart, M., Xia, M., Gonzalez, M. J., Karamouzis, M. V., Kirsch-Volders, M., Vaccari, M., Kuemmerle, N. B., Singh, N., Cruickshanks, N., Kleinstreuer, N., Van Larebeke, N., Ahmed, N., Ogunkua, O., Krishnakumar, P. K., Vadgama, P., Marignani, P. A., Ghosh, P. M., Ostrosky-Wegman, P., Thompson, P., Dent, P., Heneberg, P., Darbre, P., Leung, P. S., Nangia-Makker, P., Cheng, Q. S., Brooks Robey, R., Al-Temaimi, R., Roy, R., Andrade-Vieira, R., Sinha, R. K., Mehta, R., Vento, R., Di Fiore, R., Ponce-Cusi, R., Dornetshuber-Fleiss, R., Nahta, R., Castellino, R. C., Palorini, R., Hamid, R. A., Langie, S. A. S., Eltom, S., Brooks, S. A., Ryeom, S., Wise, S. S., Bay, S. N., Harris, S. A., Papagerakis, S., Romano, S., Pavanello, S., Eriksson, S., Forte, S., Casey, S. C., Luanpitpong, S., Lee, T. J., Otsuki, T., Chen, T., Massfelder, T., Sanderson, T., Guarnieri, T., Hultman, T., Dormoy, V., Odero-Marah, V., Sabbisetti, V., Maguer-Satta, V., Kimryn Rathmell, W., Engström, W., Decker, W. K., Bisson, W. H., Rojanasakul, Y., Luqmani, Y., Chen, Z. & Hu, Z., Jun 1 2015, In : Carcinogenesis. 36, p. S254-S296

Research output: Contribution to journalArticle

118 Scopus citations

Assessing the impact of the NIH ctsa program on institutionally sponsored clinical trials

Liu, G., Chen, G., Sinoway, L. & Berg, A., Jun 1 2013, In : Clinical and Translational Science. 6, 3, p. 196-200 5 p.

Research output: Contribution to journalArticle

4 Scopus citations

Association between DNA methylation in obesity-related genes and body mass index percentile in adolescents

He, F., Berg, A., Imamura Kawasawa, Y., Bixler, E. O., Fernandez-Mendoza, J., Whitsel, E. A. & Liao, D., Dec 1 2019, In : Scientific reports. 9, 1, 2079.

Research output: Contribution to journalArticle

6 Scopus citations

Association of dietary and supplemental folate intake and polymorphisms in three FOCM pathway genes with colorectal cancer in a population-based case-control study

Ashmore, J. H., Lesko, S. M., Muscat, J. E., Gallagher, C. J., Berg, A. S., Miller, P. E., Hartman, T. J. & Lazarus, P., Oct 1 2013, In : Genes Chromosomes and Cancer. 52, 10, p. 945-953 9 p.

Research output: Contribution to journalArticle

8 Scopus citations

Association studies of excision repair cross-complementation group 1 (ERCC1) haplotypes with lung and head and neck cancer risk in a Caucasian population

Jones, N. R., Spratt, T. E., Berg, A. S., Muscat, J. E., Lazarus, P. & Gallagher, C. J., Apr 1 2011, In : Cancer Epidemiology. 35, 2, p. 175-181 7 p.

Research output: Contribution to journalArticle

13 Scopus citations
4 Scopus citations

A statistical model for mapping morphological shape

Fu, G., Berg, A., Das, K., Li, J., Li, R. & Wu, R., Jul 5 2010, In : Theoretical Biology and Medical Modelling. 7, 1, 28.

Research output: Contribution to journalArticle

8 Scopus citations

A statistical model for testing the pleiotropic control of phenotypic plasticity for a count trait

Ma, C. X., Yu, Q., Berg, A., Drost, D., Novaes, E., Fu, G., Yap, J. S., Tan, A., Kirst, M., Cui, Y. & Wu, R., May 1 2008, In : Genetics. 179, 1, p. 627-636 10 p.

Research output: Contribution to journalArticle

11 Scopus citations

Calibrated Bayes Factors in Assessing Genetic Association Models

Liao, J. G., Liao, D. & Berg, A., Jul 2 2016, In : American Statistician. 70, 3, p. 250-256 7 p.

Research output: Contribution to journalArticle

1 Scopus citations

Caloric Intake Relative to Total Daily Energy Expenditure Using a Spinal Cord Injury-Specific Correction Factor: An Analysis by Level of Injury

Farkas, G. J., Gorgey, A. S., Dolbow, D. R., Berg, A. S. & Gater, D. R., Nov 1 2019, In : American journal of physical medicine & rehabilitation. 98, 11, p. 947-952 6 p.

Research output: Contribution to journalArticle

Cdf and survival function estimation with infinite-order kernels

Berg, A. & Politis, D., Jan 1 2009, In : Electronic Journal of Statistics. 3, p. 1436-1454 19 p.

Research output: Contribution to journalArticle

9 Scopus citations

Chronic Use of PPI and H2 Antagonists Decreases the Risk of Pouchitis After IPAA for Ulcerative Colitis

Poritz, L., Sehgal, R., Berg, A., Laufenberg Puopolo, L. J., Choi, C. & Williams, E., Mar 1 2013, In : Journal of Gastrointestinal Surgery. 17, 6, p. 1027-1031 5 p.

Research output: Contribution to journalArticle

10 Scopus citations

Circulating tumor cells in melanoma patients

Clawson, G. A., Kimchi, E., Patrick, S. D., Xin, P., Harouaka, R., Zheng, S., Berg, A., Schell, T., Staveley-O'Carroll, K. F., Neves, R. I., Mosca, P. J. & Thiboutot, D., Jul 19 2012, In : PloS one. 7, 7, e41052.

Research output: Contribution to journalArticle

45 Scopus citations

Clinical and Genetic Factors Associated With Complications After Crohn's Ileocolectomy

Kline, B. P., Weaver, T., Brinton, D. L., Deiling, S., Yochum, G. S., Berg, A. S. & Koltun, W. A., Mar 1 2020, In : Diseases of the colon and rectum. 63, 3, p. 357-364 8 p.

Research output: Contribution to journalArticle

Combined Medical and Surgical Approach Improves Healing of Septic Perianal Crohn's Disease

Choi, C. S., Berg, A. S., Sangster, W., Schieffer, K. M., Harris, L. R., Deiling, S. M. & Koltun, W. A., Jan 1 2016, In : Journal of the American College of Surgeons. 223, 3, p. 506-514.e1

Research output: Contribution to journalArticle

8 Scopus citations

Comparative effects of two different forms of selenium on oxidative stress biomarkers in healthy men: A randomized clinical trial

Richie, J. P., Das, A., Calcagnotto, A. M., Sinha, R., Neidig, W., Liao, J., Lengerich, E. J., Berg, A., Hartman, T. J., Ciccarella, A., Baker, A., Kaag, M. G., Goodin, S., DiPaola, R. S. & El-Bayoumy, K., Aug 2014, In : Cancer Prevention Research. 7, 8, p. 796-804 9 p.

Research output: Contribution to journalArticle

24 Scopus citations

Comparison and evaluation of network clustering algorithms applied to genetic interaction networks

Hou, L., Wang, L., Berg, A., Qian, M., Zhu, Y., Li, F. & Deng, M., Jan 1 2012, In : Frontiers in Bioscience - Elite. 4 E, 6, p. 2150-2161 12 p.

Research output: Contribution to journalArticle

1 Scopus citations

Compliance with Clostridium difficile treatment guidelines: Effect on patient outcomes

Crowell, K. T., Julian, K. G., Katzman, M., Berg, A. S., Tinsley, A., Williams, E. D., Koltun, W. A. & Messaris, E., Aug 1 2017, In : Epidemiology and Infection. 145, 11, p. 2185-2192 8 p.

Research output: Contribution to journalArticle

9 Scopus citations

Connecting and Contrasting the Bayes Factor and a Modified ROPE Procedure for Testing Interval Null Hypotheses

Liao, J. G., Midya, V. & Berg, A., Jan 1 2020, (Accepted/In press) In : American Statistician.

Research output: Contribution to journalArticle

Development of 16 polymorphic simple sequence repeat markers for Lycoris longituba from expressed sequence tags

He, Q., Shen, Y., Chen, Y., Zhou, Y., Berg, A., Wu, R. & Huang, M., Jan 1 2009, In : Molecular Ecology Resources. 9, 1, p. 278-280 3 p.

Research output: Contribution to journalArticle

4 Scopus citations

Development of a Novel Multi-Isoform ALDH Inhibitor Effective as an Antimelanoma Agent

Dinavahi, S. S., Gowda, R., Gowda, K., Bazewicz, C. G., Chirasani, V. R., Battu, M. B., Berg, A., Dokholyan, N. V., Amin, S. & Robertson, G. P., Feb 1 2020, In : Molecular cancer therapeutics. 19, 2, p. 447-459 13 p.

Research output: Contribution to journalArticle

Discussion: Why do we test multiple traits in genetic association studies?

Wu, R., Berg, A. & Li, Q., Mar 1 2009, In : Journal of the Korean Statistical Society. 38, 1, p. 11-13 3 p.

Research output: Contribution to journalArticle

Diversification in the genetic architecture of gene expression and transcriptional networks in organ differentiation of Populus

Drost, D. R., Benedict, C. I., Berg, A., Novaes, E., Novaes, C. R. D. B., Yu, Q., Dervinis, C., Maia, J. M., Yap, J., Miles, B. & Kirst, M., May 4 2010, In : Proceedings of the National Academy of Sciences of the United States of America. 107, 18, p. 8492-8497 6 p.

Research output: Contribution to journalArticle

47 Scopus citations

Diverticular disease is associated with benign intra-abdominal cystic disease

Wrafter, P. F., Connelly, T. M., Khan, J. S. A., Lucey, B. C., Berg, A., Koltun, W. & Joyce, W. P., May 4 2017, In : Expert Review of Gastroenterology and Hepatology. 11, 5, p. 487-490 4 p.

Research output: Contribution to journalArticle

3 Scopus citations

Diverticulitis and Crohn's disease have distinct but overlapping tumor necrosis superfamily 15 haplotypes

Connelly, T. M., Choi, C. S., Berg, A. S., Harris, L., Coble, J. & Koltun, W. A., Jun 15 2017, In : Journal of Surgical Research. 214, p. 262-269 8 p.

Research output: Contribution to journalArticle

7 Scopus citations

DLG5 P1371Q is associated with inflammatory bowel disease and complementary to R30Q in disease susceptibility

Lin, Z., Hegarty, J. P., Berg, A., Wang, Z., Kelly, A. A., Wang, Y., Poritz, L. S., Wu, R. & Koltun, W. A., Nov 1 2011, In : Swiss Medical Weekly. 141, NOVEMBER

Research output: Contribution to journalArticle

6 Scopus citations

Effect of varenicline on individual nicotine withdrawal symptoms: A combined analysis of eight randomized, placebo-controlled trials

Foulds, J., Russ, C., Yu, C. R., Zou, K. H., Galaznik, A., Franzon, M., Berg, A. & Hughes, J. R., Nov 1 2013, In : Nicotine and Tobacco Research. 15, 11, p. 1849-1857 9 p.

Research output: Contribution to journalArticle

27 Scopus citations
2 Scopus citations

Focused, high accuracy 5-methylcytosine quantitation with base resolution by benchtop next-generation sequencing

Masser, D. R., Berg, A. & Freeman, W. M., Oct 16 2013, In : Epigenetics and Chromatin. 6, 1, 33.

Research output: Contribution to journalArticle

61 Scopus citations

Functional Assessment of Human Coding Mutations Affecting Skin Pigmentation Using Zebrafish

Tsetskhladze, Z. R., Canfield, V. A., Ang, K. C., Wentzel, S. M., Reid, K. P., Berg, A. S., Johnson, S. L., Kawakami, K. & Cheng, K. C., Oct 10 2012, In : PloS one. 7, 10, e47398.

Research output: Contribution to journalArticle

30 Scopus citations

Functional clustering of periodic transcriptional profiles through ARMA(p,q)

Li, N., McMurry, T., Berg, A., Wang, Z., Berceli, S. A. & Wu, R., Sep 10 2010, In : PloS one. 5, 4, e9894.

Research output: Contribution to journalArticle

22 Scopus citations

Functional mapping of drug response with pharmacodynamic-pharmacokinetic principles

Ahn, K., Luo, J., Berg, A., Keefe, D. & Wu, R., Jul 1 2010, In : Trends in Pharmacological Sciences. 31, 7, p. 306-311 6 p.

Research output: Contribution to journalArticle

25 Scopus citations

Functional mapping of expression quantitative trait loci that regulate oscillatory gene expression.

Berg, A., Li, N., Tong, C., Wang, Z., Berceli, S. A. & Wu, R., Jul 14 2011, In : Methods in molecular biology (Clifton, N.J.). 734, p. 241-255 15 p.

Research output: Contribution to journalArticle

4 Scopus citations

Genetic and environmental influences on plasma vitamin D binding protein concentrations

Wilson, R. T., Bortner, J. D., Roff, A., Das, A., Battaglioli, E. J., Richie, J. P., Barnholtz-Sloan, J., Chinchilli, V. M., Berg, A., Liu, G., Salzberg, A. C. & El-Bayoumy, K., Jun 1 2015, In : Translational Research. 165, 6, p. 667-676 10 p.

Research output: Contribution to journalArticle

20 Scopus citations

Genetic determinants associated with early age of diagnosis of IBD

Connelly, T. M., Berg, A. S., Iii, L. H., Brinton, D., Deiling, S. & Koltun, W. A., Jan 1 2015, In : Diseases of the colon and rectum. 58, 3, p. 321-327 7 p.

Research output: Contribution to journalArticle

15 Scopus citations

Genetic risk profiling and gene signature modeling to predict risk of complications after IPAA

Sehgal, R., Berg, A., Polinski, J. I., Hegarty, J. P., Lin, Z., McKenna, K., Stewart, D., Poritz, L. & Koltun, W., Mar 1 2012, In : Diseases of the Colon and Rectum. 55, 3, p. 239-248 10 p.

Research output: Contribution to journalArticle

23 Scopus citations

Genetic Variants and Monoallelic Expression of Surfactant Protein-D in Inflammatory Bowel Disease

Lin, Z., John, G., Hegarty, J. P., Berg, A., Yu, W., Wang, Y., Kelly, A. A., Peterson, B. Z., Poritz, L. S., Floros, J. & Koltun, W. A., Sep 1 2011, In : Annals of Human Genetics. 75, 5, p. 559-568 10 p.

Research output: Contribution to journalArticle

9 Scopus citations

Glucuronidation genotypes and nicotine metabolic phenotypes: Importance of functional UGT2B10 and UGT2B17 polymorphisms

Chen, G., Giambrone, N. E., Dluzen, D. F., Muscat, J. E., Berg, A., Gallagher, C. J. & Lazarus, P., Oct 1 2010, In : Cancer Research. 70, 19, p. 7543-7552 10 p.

Research output: Contribution to journalArticle

49 Scopus citations

Glycated hemoglobin differences among blog-reading adults with type 1 diabetes compared with those who do not read blogs: Cross-sectional study

Oser, S. M., Stuckey, H. L., Parascando, J. A., McGinley, E. L., Berg, A. & Oser, T. K., Apr 2019, In : Journal of medical Internet research. 21, 4, e13634.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations
39 Scopus citations