James Gregory Ferry

    • 10037 Citations
    • 52 h-Index
    1974 …2019

    Research output per year

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    Research Output

    2019

    Comparative genomics of the genus Methanohalophilus, including a newly isolated strain from Kebrit deep in the Red Sea

    Guan, Y., Ngugi, D. K., Vinu, M., Blom, J., Alam, I., Guillot, S., Ferry, J. G. & Stingl, U., Jan 1 2019, In : Frontiers in Microbiology. 10, APR, 839.

    Research output: Contribution to journalArticle

    Open Access
    3 Scopus citations

    Life on the thermodynamic edge: Respiratory growth of an acetotrophic methanogen

    Prakash, D., Chauhan, S. S. & Ferry, J. G., Aug 21 2019, In : Science Advances. 5, 8, eaaw9059.

    Research output: Contribution to journalArticle

    Open Access
    5 Scopus citations

    Structure and function of an unusual flavodoxin from the domain Archaea

    Prakash, D., Iyer, P. R., Suharti, S., Walters, K. A., Santiago-Martinez, M. G., Golbeck, J. H., Murakami, K. S. & Ferry, J. G., Dec 17 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 51, p. 25917-25922 6 p.

    Research output: Contribution to journalArticle

    2018

    A biochemical framework for anaerobic oxidation of methane driven by Fe(III)-dependent respiration

    Yan, Z., Joshi, P., Gorski, C. A. & Ferry, J. G., Dec 1 2018, In : Nature communications. 9, 1, 1642.

    Research output: Contribution to journalArticle

    27 Scopus citations

    Electron and proton flux for carbon dioxide reduction in methanosarcina barkeri during direct interspecies electron transfer

    Holmes, D. E., Rotaru, A. E., Ueki, T., Shrestha, P. M., Ferry, J. G. & Lovley, D. R., Dec 13 2018, In : Frontiers in Microbiology. 9, DEC, 03109.

    Research output: Contribution to journalArticle

    16 Scopus citations

    Electron bifurcation and confurcation in methanogenesis and reverse methanogenesis

    Yan, Z. & Ferry, J. G., Jun 20 2018, In : Frontiers in Microbiology. 9, JUN, 1322.

    Research output: Contribution to journalReview article

    10 Scopus citations

    Methane on Mars and Habitability: Challenges and Responses

    Yung, Y. L., Chen, P., Nealson, K., Atreya, S., Beckett, P., Blank, J. G., Ehlmann, B., Eiler, J., Etiope, G., Ferry, J. G., Forget, F., Gao, P., Hu, R., Kleinböhl, A., Klusman, R., Lefèvre, F., Miller, C., Mischna, M., Mumma, M., Newman, S. & 18 others, Oehler, D., Okumura, M., Oremland, R., Orphan, V., Popa, R., Russell, M., Shen, L., Sherwood Lollar, B., Staehle, R., Stamenković, V., Stolper, D., Templeton, A., Vandaele, A. C., Viscardy, S., Webster, C. R., Wennberg, P. O., Wong, M. L. & Worden, J., Oct 2018, In : Astrobiology. 18, 10, p. 1221-1242 22 p.

    Research output: Contribution to journalReview article

    16 Scopus citations

    Sulphonamide inhibition studies of the β-carbonic anhydrase from the bacterial pathogen Clostridium perfringens

    Vullo, D., Kumar, R. S. S., Scozzafava, A., Ferry, J. G. & Supuran, C. T., Jan 1 2018, In : Journal of Enzyme Inhibition and Medicinal Chemistry. 33, 1, p. 31-36 6 p.

    Research output: Contribution to journalArticle

    7 Scopus citations

    The biochemistry and physiology of respiratory-driven reversed methanogenesis

    Nazem-Bokaee, H., Yan, Z., Maranas, C. D. & Ferry, J. G., Jun 20 2018, Methane Biocatalysis: Paving the Way to Sustainability. Springer International Publishing, p. 183-197 15 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

    2 Scopus citations

    Toward a mechanistic and physiological understanding of a ferredoxin:disulfide reductase from the domains Archaea and Bacteria

    Prakash, D., Walters, K. A., Martinie, X. R. J., McCarver, A. C., Kumar, A. K., Lessner, D. J., Krebs, C., Golbeck, J. H. & Ferry, J. G., Jun 15 2018, In : Journal of Biological Chemistry. 293, 24, p. 9198-9209 12 p.

    Research output: Contribution to journalArticle

    4 Scopus citations
    2017

    A ferredoxin- and f420h2-dependent, electron-bifurcating, heterodisulfide reductase with homologs in the domains Bacteria and Archaea

    Yan, Z., Wang, M. & Ferry, J. G., Jan 1 2017, In : mBio. 8, 1, e02285-16.

    Research output: Contribution to journalArticle

    27 Scopus citations

    Anaerobic metabolism of aromatic compounds

    Haddock, J. D. & Ferry, J. G., Jan 1 2017, Bioprocessing and Biotreatment of Coal. CRC Press, p. 393-416 24 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

    Functional role of MrpA in the MrpABCDEFG Na+/H+ antiporter complex from the archaeon Methanosarcina acetivorans

    Jasso-Chávez, R., Diaz-Perez, C., Rodríguez-Zavala, J. S. & Ferry, J. G., Jan 1 2017, In : Journal of bacteriology. 199, 2, e00662-16.

    Research output: Contribution to journalArticle

    10 Scopus citations

    Single-cell genomics reveals pyrrolysine-encoding potential in members of uncultivated archaeal candidate division MSBL1

    Guan, Y., Haroon, M. F., Alam, I., Ferry, J. G. & Stingl, U., Aug 2017, In : Environmental Microbiology Reports. 9, 4, p. 404-410 7 p.

    Research output: Contribution to journalArticle

    2 Scopus citations
    2016

    Assessing methanotrophy and carbon fixation for biofuel production by Methanosarcina acetivorans

    Nazem-Bokaee, H., Gopalakrishnan, S., Ferry, J. G., Wood, T. K. & Maranas, C. D., Jan 17 2016, In : Microbial Cell Factories. 15, 1, 10.

    Research output: Contribution to journalArticle

    22 Scopus citations

    Essential amino acid supplementation by gut microbes of a wood-feeding cerambycid

    Ayayee, P. A., Larsen, T., Rosa, C., Felton, G. W., Ferry, J. G. & Hoover, K., Feb 1 2016, In : Environmental entomology. 45, 1, p. 66-73 8 p.

    Research output: Contribution to journalArticle

    24 Scopus citations

    Reversing methanogenesis to capture methane for liquid biofuel precursors

    Soo, V. W. C., McAnulty, M. J., Tripathi, A., Zhu, F., Zhang, L., Hatzakis, E., Smith, P. B., Agrawal, S., Nazem-Bokaee, H., Gopalakrishnan, S., Salis, H. M., Ferry, J. G., Maranas, C. D., Patterson, A. D. & Wood, T. K., Jan 14 2016, In : Microbial Cell Factories. 15, 1, 11.

    Research output: Contribution to journalArticle

    54 Scopus citations
    6 Scopus citations
    2015

    Acetate metabolism in anaerobes from the domain Archaea

    Ferry, J. G., Jun 9 2015, In : Life. 5, 2, p. 1454-1471 18 p.

    Research output: Contribution to journalReview article

    15 Scopus citations

    A Ferredoxin Disulfide Reductase Delivers Electrons to the Methanosarcina barkeri Class III Ribonucleotide Reductase

    Wei, Y., Li, B., Prakash, D., Ferry, J. G., Elliott, S. J. & Stubbe, J. A., Nov 4 2015, In : Biochemistry. 54, 47, p. 7019-7028 10 p.

    Research output: Contribution to journalArticle

    8 Scopus citations

    Carbonic Anhydrases of Environmentally and Medically Relevant Anaerobic Prokaryotes

    Ferry, J. G., Jan 8 2015, Carbonic Anhydrases as Biocatalysts: From Theory to Medical and Industrial Applications. Elsevier Inc., p. 325-336 12 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

    1 Scopus citations

    Structural and biochemical characterization of a ferredoxin: Thioredoxin reductase-like enzyme from methanosarcina acetivorans

    Kumar, A. K., Kumar, R. S. S., Yennawar, N. H., Yennawar, H. P. & Ferry, J. G., May 19 2015, In : Biochemistry. 54, 19, p. 3122-3128 7 p.

    Research output: Contribution to journalArticle

    10 Scopus citations
    2014

    Characterization of the RnfB and RnfG subunits of the Rnf complex from the archaeon Methanosarcina acetivorans

    Suharti, S., Wang, M., De Vries, S. & Ferry, J. G., May 16 2014, In : PloS one. 9, 5, e97966.

    Research output: Contribution to journalArticle

    15 Scopus citations

    Correction to MrpA functions in energy conversion during acetate-dependent growth of Methanosarcina acetivorans [Journal of Bacteriology 195, 17, (2013) 3987-3994]

    Jasso-Chávez, R., Apolinario, E. E., Sowers, K. R. & Ferry, J. G., Feb 1 2014, In : Journal of bacteriology. 196, 3, 1 p.

    Research output: Contribution to journalComment/debate

    Draft genome sequence of an obligately methylotrophic methanogen, Methanococcoides methylutens, isolated from marine sediment

    Guan, Y., Ngugi, D. K., Blom, J., Ali, S., Ferry, J. G. & Stingl, U., Jan 1 2014, In : Genome Announcements. 2, 6, e01184-14.

    Research output: Contribution to journalArticle

    4 Scopus citations

    Gut microbes contribute to nitrogen provisioning in a wood-feeding cerambycid

    Ayayee, P., Rosa, C., Ferry, J. G., Felton, G., Saunders, M. C. & Hoover, K., Jan 1 2014, In : Environmental Entomology. 43, 4, p. 903-912 10 p.

    Research output: Contribution to journalArticle

    28 Scopus citations

    Methane oxidation by anaerobic archaea for conversion to liquid fuels

    Mueller, T. J., Grisewood, M. J., Nazem-Bokaee, H., Gopalakrishnan, S., Ferry, J. G., Wood, T. K. & Maranas, C. D., Jan 1 2014, In : Journal of Industrial Microbiology and Biotechnology. 42, 3, p. 391-401 11 p.

    Research output: Contribution to journalArticle

    14 Scopus citations

    Prokaryotic carbonic anhydrases of earth’s environment

    Kumar, R. S. S. & Ferry, J. G., Jan 1 2014, In : Sub-cellular biochemistry. 75, p. 77-87 11 p.

    Research output: Contribution to journalArticle

    12 Scopus citations
    2013

    Anion inhibition studies of a β-carbonic anhydrase from Clostridium perfringens

    Vullo, D., Sai Kumar, R. S., Scozzafava, A., Capasso, C., Ferry, J. G. & Supuran, C. T., Dec 15 2013, In : Bioorganic and Medicinal Chemistry Letters. 23, 24, p. 6706-6710 5 p.

    Research output: Contribution to journalArticle

    39 Scopus citations

    Carbonic anhydrases of anaerobic microbes

    Ferry, J. G., Mar 15 2013, In : Bioorganic and Medicinal Chemistry. 21, 6, p. 1392-1395 4 p.

    Research output: Contribution to journalArticle

    16 Scopus citations

    cbiochemistry and physiology of the β class carbonic anhydrase (Cpb) from clostridium perfringens strain 13

    Siva Sai Kumar, R., Hendrick, W., Correll, J. B., Patterson, A. D., Melville, S. B. & Ferry, J. G., May 1 2013, In : Journal of bacteriology. 195, 10, p. 2262-2269 8 p.

    Research output: Contribution to journalArticle

    12 Scopus citations

    Frontiers, opportunities, and challenges in biochemical and chemical catalysis of CO2 fixation

    Appel, A. M., Bercaw, J. E., Bocarsly, A. B., Dobbek, H., Dubois, D. L., Dupuis, M., Ferry, J. G., Fujita, E., Hille, R., Kenis, P. J. A., Kerfeld, C. A., Morris, R. H., Peden, C. H. F., Portis, A. R., Ragsdale, S. W., Rauchfuss, T. B., Reek, J. N. H., Seefeldt, L. C., Thauer, R. K. & Waldrop, G. L., Aug 14 2013, In : Chemical Reviews. 113, 8, p. 6621-6658 38 p.

    Research output: Contribution to journalReview article

    967 Scopus citations

    MrpA functions in energy conversion during acetate-dependent growth of Methanosarcina acetivorans

    Jasso-Chávez, R., Apolinario, E. E., Sowers, K. R. & Ferry, J. G., Sep 11 2013, In : Journal of bacteriology. 195, 17, p. 3987-3994 8 p.

    Research output: Contribution to journalArticle

    16 Scopus citations

    Role of Trp19 and Tyr200 in catalysis by the γ-class carbonic anhydrase from Methanosarcina thermophila

    Zimmerman, S., Domsic, J. F., Tu, C., Robbins, A. H., McKenna, R., Silverman, D. N. & Ferry, J. G., Jan 1 2013, In : Archives of Biochemistry and Biophysics. 529, 1, p. 11-17 7 p.

    Research output: Contribution to journalArticle

    14 Scopus citations
    2012

    MreA functions in the global regulation of methanogenic pathways in Methanosarcina acetivorans

    Reichlen, M. J., Vepachedu, V. R., Murakami, K. S. & Ferry, J. G., Jul 1 2012, In : mBio. 3, 4

    Research output: Contribution to journalArticle

    17 Scopus citations

    Role of the fused corrinoid/methyl transfer protein CmtA during CO-dependent growth of methanosarcina acetivorans

    Vepachedu, V. R. & Ferry, J. G., Aug 1 2012, In : Journal of bacteriology. 194, 16, p. 4161-4168 8 p.

    Research output: Contribution to journalArticle

    10 Scopus citations

    Role of the fused corrinoid/methyl transfer protein CmtA during CO-Dependent Growth of Methanosarcina acetivorans

    Vepachedu, V. R. & Ferry, J. G., Nov 1 2012, In : Journal of bacteriology. 194, 21, 1 p.

    Research output: Contribution to journalComment/debate

    2 Scopus citations
    2011

    Acetate kinase and phosphotransacetylase

    Ferry, J. G., 2011, Methods in Enzymology. Academic Press Inc., p. 219-231 13 p. (Methods in Enzymology; vol. 494).

    Research output: Chapter in Book/Report/Conference proceedingChapter

    11 Scopus citations

    Electron transport in acetate-grown Methanosarcina acetivorans

    Wang, M., Tomb, J. F. & Ferry, J. G., Jul 27 2011, In : BMC microbiology. 11, 165.

    Research output: Contribution to journalArticle

    35 Scopus citations
    3 Scopus citations

    Fundamentals of methanogenic pathways that are key to the biomethanation of complex biomass

    Ferry, J. G., Jun 1 2011, In : Current Opinion in Biotechnology. 22, 3, p. 351-357 7 p.

    Research output: Contribution to journalReview article

    67 Scopus citations

    Metabolic reconstruction of the archaeon methanogen Methanosarcina Acetivorans

    Satish Kumar, V., Ferry, J. G. & Maranas, C. D., Feb 15 2011, In : BMC systems biology. 5, 28.

    Research output: Contribution to journalArticle

    34 Scopus citations
    2010

    An engineered methanogenic pathway derived from the domains bacteria and archaea

    Lessner, D. J., Lhu, L., Wahal, C. S. & Ferry, J. G., Nov 1 2010, In : mBio. 1, 5, e00243-10.

    Research output: Contribution to journalArticle

    16 Scopus citations

    Characterization of CamH from Methanosarcina thermophila, founding member of a subclass of the γ class of carbonic anhydrases

    Zimmerman, S. A., Tomb, J. F. & Ferry, J. G., Mar 1 2010, In : Journal of bacteriology. 192, 5, p. 1353-1360 8 p.

    Research output: Contribution to journalArticle

    49 Scopus citations

    CO in methanogenesis

    Ferry, J. G., Mar 1 2010, In : Annals of Microbiology. 60, 1, p. 1-12 12 p.

    Research output: Contribution to journalReview article

    10 Scopus citations

    Functional analysis of the three TATA binding protein homologs in Methanosarcina acetivorans

    Reichlen, M. J., Murakami, K. S. & Ferry, J. G., Mar 1 2010, In : Journal of bacteriology. 192, 6, p. 1511-1517 7 p.

    Research output: Contribution to journalArticle

    16 Scopus citations

    How to Make a Living by Exhaling Methane

    Ferry, J. G., Oct 13 2010, In : Annual Review of Microbiology. 64, p. 453-473 21 p.

    Research output: Contribution to journalReview article

    100 Scopus citations

    The chemical biology of methanogenesis

    Ferry, J. G., Dec 1 2010, In : Planetary and Space Science. 58, 14-15, p. 1775-1783 9 p.

    Research output: Contribution to journalReview article

    39 Scopus citations

    The γ class of carbonic anhydrases

    Ferry, J. G., Feb 1 2010, In : Biochimica et Biophysica Acta - Proteins and Proteomics. 1804, 2, p. 374-381 8 p.

    Research output: Contribution to journalReview article

    101 Scopus citations
    2009

    Mechanism and Inhibition of the β-Class and γ-Class Carbonic Anhydrases

    Ferry, J. G. & Supuran, C. T., Nov 4 2009, Drug Design of Zinc-Enzyme Inhibitors: Functional, Structural, and Disease Applications. John Wiley & Sons, Inc., p. 285-300 16 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

    6 Scopus citations