James Gregory Ferry

    • 10037 Citations
    • 52 h-Index
    1974 …2019

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    2019

    Comparative genomics of the genus Methanohalophilus, including a newly isolated strain from Kebrit deep in the Red Sea

    Guan, Y., Ngugi, D. K., Vinu, M., Blom, J., Alam, I., Guillot, S., Ferry, J. G. & Stingl, U., Jan 1 2019, In : Frontiers in Microbiology. 10, APR, 839.

    Research output: Contribution to journalArticle

    Open Access
    3 Scopus citations

    Life on the thermodynamic edge: Respiratory growth of an acetotrophic methanogen

    Prakash, D., Chauhan, S. S. & Ferry, J. G., Aug 21 2019, In : Science Advances. 5, 8, eaaw9059.

    Research output: Contribution to journalArticle

    Open Access
    5 Scopus citations

    Structure and function of an unusual flavodoxin from the domain Archaea

    Prakash, D., Iyer, P. R., Suharti, S., Walters, K. A., Santiago-Martinez, M. G., Golbeck, J. H., Murakami, K. S. & Ferry, J. G., Dec 17 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 51, p. 25917-25922 6 p.

    Research output: Contribution to journalArticle

    2018

    A biochemical framework for anaerobic oxidation of methane driven by Fe(III)-dependent respiration

    Yan, Z., Joshi, P., Gorski, C. A. & Ferry, J. G., Dec 1 2018, In : Nature communications. 9, 1, 1642.

    Research output: Contribution to journalArticle

    27 Scopus citations

    Electron and proton flux for carbon dioxide reduction in methanosarcina barkeri during direct interspecies electron transfer

    Holmes, D. E., Rotaru, A. E., Ueki, T., Shrestha, P. M., Ferry, J. G. & Lovley, D. R., Dec 13 2018, In : Frontiers in Microbiology. 9, DEC, 03109.

    Research output: Contribution to journalArticle

    16 Scopus citations

    Sulphonamide inhibition studies of the β-carbonic anhydrase from the bacterial pathogen Clostridium perfringens

    Vullo, D., Kumar, R. S. S., Scozzafava, A., Ferry, J. G. & Supuran, C. T., Jan 1 2018, In : Journal of Enzyme Inhibition and Medicinal Chemistry. 33, 1, p. 31-36 6 p.

    Research output: Contribution to journalArticle

    7 Scopus citations

    Toward a mechanistic and physiological understanding of a ferredoxin:disulfide reductase from the domains Archaea and Bacteria

    Prakash, D., Walters, K. A., Martinie, X. R. J., McCarver, A. C., Kumar, A. K., Lessner, D. J., Krebs, C., Golbeck, J. H. & Ferry, J. G., Jun 15 2018, In : Journal of Biological Chemistry. 293, 24, p. 9198-9209 12 p.

    Research output: Contribution to journalArticle

    4 Scopus citations
    2017

    A ferredoxin- and f420h2-dependent, electron-bifurcating, heterodisulfide reductase with homologs in the domains Bacteria and Archaea

    Yan, Z., Wang, M. & Ferry, J. G., Jan 1 2017, In : mBio. 8, 1, e02285-16.

    Research output: Contribution to journalArticle

    27 Scopus citations

    Functional role of MrpA in the MrpABCDEFG Na+/H+ antiporter complex from the archaeon Methanosarcina acetivorans

    Jasso-Chávez, R., Diaz-Perez, C., Rodríguez-Zavala, J. S. & Ferry, J. G., Jan 1 2017, In : Journal of bacteriology. 199, 2, e00662-16.

    Research output: Contribution to journalArticle

    10 Scopus citations

    Single-cell genomics reveals pyrrolysine-encoding potential in members of uncultivated archaeal candidate division MSBL1

    Guan, Y., Haroon, M. F., Alam, I., Ferry, J. G. & Stingl, U., Aug 2017, In : Environmental Microbiology Reports. 9, 4, p. 404-410 7 p.

    Research output: Contribution to journalArticle

    2 Scopus citations
    2016

    Assessing methanotrophy and carbon fixation for biofuel production by Methanosarcina acetivorans

    Nazem-Bokaee, H., Gopalakrishnan, S., Ferry, J. G., Wood, T. K. & Maranas, C. D., Jan 17 2016, In : Microbial Cell Factories. 15, 1, 10.

    Research output: Contribution to journalArticle

    22 Scopus citations

    Essential amino acid supplementation by gut microbes of a wood-feeding cerambycid

    Ayayee, P. A., Larsen, T., Rosa, C., Felton, G. W., Ferry, J. G. & Hoover, K., Feb 1 2016, In : Environmental entomology. 45, 1, p. 66-73 8 p.

    Research output: Contribution to journalArticle

    24 Scopus citations

    Reversing methanogenesis to capture methane for liquid biofuel precursors

    Soo, V. W. C., McAnulty, M. J., Tripathi, A., Zhu, F., Zhang, L., Hatzakis, E., Smith, P. B., Agrawal, S., Nazem-Bokaee, H., Gopalakrishnan, S., Salis, H. M., Ferry, J. G., Maranas, C. D., Patterson, A. D. & Wood, T. K., Jan 14 2016, In : Microbial Cell Factories. 15, 1, 11.

    Research output: Contribution to journalArticle

    54 Scopus citations
    6 Scopus citations
    2015

    A Ferredoxin Disulfide Reductase Delivers Electrons to the Methanosarcina barkeri Class III Ribonucleotide Reductase

    Wei, Y., Li, B., Prakash, D., Ferry, J. G., Elliott, S. J. & Stubbe, J. A., Nov 4 2015, In : Biochemistry. 54, 47, p. 7019-7028 10 p.

    Research output: Contribution to journalArticle

    8 Scopus citations

    Structural and biochemical characterization of a ferredoxin: Thioredoxin reductase-like enzyme from methanosarcina acetivorans

    Kumar, A. K., Kumar, R. S. S., Yennawar, N. H., Yennawar, H. P. & Ferry, J. G., May 19 2015, In : Biochemistry. 54, 19, p. 3122-3128 7 p.

    Research output: Contribution to journalArticle

    10 Scopus citations
    2014

    Characterization of the RnfB and RnfG subunits of the Rnf complex from the archaeon Methanosarcina acetivorans

    Suharti, S., Wang, M., De Vries, S. & Ferry, J. G., May 16 2014, In : PloS one. 9, 5, e97966.

    Research output: Contribution to journalArticle

    15 Scopus citations

    Draft genome sequence of an obligately methylotrophic methanogen, Methanococcoides methylutens, isolated from marine sediment

    Guan, Y., Ngugi, D. K., Blom, J., Ali, S., Ferry, J. G. & Stingl, U., Jan 1 2014, In : Genome Announcements. 2, 6, e01184-14.

    Research output: Contribution to journalArticle

    4 Scopus citations

    Gut microbes contribute to nitrogen provisioning in a wood-feeding cerambycid

    Ayayee, P., Rosa, C., Ferry, J. G., Felton, G., Saunders, M. C. & Hoover, K., Jan 1 2014, In : Environmental Entomology. 43, 4, p. 903-912 10 p.

    Research output: Contribution to journalArticle

    28 Scopus citations

    Methane oxidation by anaerobic archaea for conversion to liquid fuels

    Mueller, T. J., Grisewood, M. J., Nazem-Bokaee, H., Gopalakrishnan, S., Ferry, J. G., Wood, T. K. & Maranas, C. D., Jan 1 2014, In : Journal of Industrial Microbiology and Biotechnology. 42, 3, p. 391-401 11 p.

    Research output: Contribution to journalArticle

    14 Scopus citations

    Prokaryotic carbonic anhydrases of earth’s environment

    Kumar, R. S. S. & Ferry, J. G., Jan 1 2014, In : Sub-cellular biochemistry. 75, p. 77-87 11 p.

    Research output: Contribution to journalArticle

    12 Scopus citations
    2013

    Anion inhibition studies of a β-carbonic anhydrase from Clostridium perfringens

    Vullo, D., Sai Kumar, R. S., Scozzafava, A., Capasso, C., Ferry, J. G. & Supuran, C. T., Dec 15 2013, In : Bioorganic and Medicinal Chemistry Letters. 23, 24, p. 6706-6710 5 p.

    Research output: Contribution to journalArticle

    39 Scopus citations

    Carbonic anhydrases of anaerobic microbes

    Ferry, J. G., Mar 15 2013, In : Bioorganic and Medicinal Chemistry. 21, 6, p. 1392-1395 4 p.

    Research output: Contribution to journalArticle

    16 Scopus citations

    cbiochemistry and physiology of the β class carbonic anhydrase (Cpb) from clostridium perfringens strain 13

    Siva Sai Kumar, R., Hendrick, W., Correll, J. B., Patterson, A. D., Melville, S. B. & Ferry, J. G., May 1 2013, In : Journal of bacteriology. 195, 10, p. 2262-2269 8 p.

    Research output: Contribution to journalArticle

    12 Scopus citations

    MrpA functions in energy conversion during acetate-dependent growth of Methanosarcina acetivorans

    Jasso-Chávez, R., Apolinario, E. E., Sowers, K. R. & Ferry, J. G., Sep 11 2013, In : Journal of bacteriology. 195, 17, p. 3987-3994 8 p.

    Research output: Contribution to journalArticle

    16 Scopus citations

    Role of Trp19 and Tyr200 in catalysis by the γ-class carbonic anhydrase from Methanosarcina thermophila

    Zimmerman, S., Domsic, J. F., Tu, C., Robbins, A. H., McKenna, R., Silverman, D. N. & Ferry, J. G., Jan 1 2013, In : Archives of Biochemistry and Biophysics. 529, 1, p. 11-17 7 p.

    Research output: Contribution to journalArticle

    14 Scopus citations
    2012

    MreA functions in the global regulation of methanogenic pathways in Methanosarcina acetivorans

    Reichlen, M. J., Vepachedu, V. R., Murakami, K. S. & Ferry, J. G., Jul 1 2012, In : mBio. 3, 4

    Research output: Contribution to journalArticle

    17 Scopus citations

    Role of the fused corrinoid/methyl transfer protein CmtA during CO-dependent growth of methanosarcina acetivorans

    Vepachedu, V. R. & Ferry, J. G., Aug 1 2012, In : Journal of bacteriology. 194, 16, p. 4161-4168 8 p.

    Research output: Contribution to journalArticle

    10 Scopus citations
    2011

    Electron transport in acetate-grown Methanosarcina acetivorans

    Wang, M., Tomb, J. F. & Ferry, J. G., Jul 27 2011, In : BMC microbiology. 11, 165.

    Research output: Contribution to journalArticle

    35 Scopus citations
    3 Scopus citations

    Metabolic reconstruction of the archaeon methanogen Methanosarcina Acetivorans

    Satish Kumar, V., Ferry, J. G. & Maranas, C. D., Feb 15 2011, In : BMC systems biology. 5, 28.

    Research output: Contribution to journalArticle

    34 Scopus citations
    2010

    An engineered methanogenic pathway derived from the domains bacteria and archaea

    Lessner, D. J., Lhu, L., Wahal, C. S. & Ferry, J. G., Nov 1 2010, In : mBio. 1, 5, e00243-10.

    Research output: Contribution to journalArticle

    16 Scopus citations

    Characterization of CamH from Methanosarcina thermophila, founding member of a subclass of the γ class of carbonic anhydrases

    Zimmerman, S. A., Tomb, J. F. & Ferry, J. G., Mar 1 2010, In : Journal of bacteriology. 192, 5, p. 1353-1360 8 p.

    Research output: Contribution to journalArticle

    49 Scopus citations

    Functional analysis of the three TATA binding protein homologs in Methanosarcina acetivorans

    Reichlen, M. J., Murakami, K. S. & Ferry, J. G., Mar 1 2010, In : Journal of bacteriology. 192, 6, p. 1511-1517 7 p.

    Research output: Contribution to journalArticle

    16 Scopus citations
    2009

    Methanolobus zinderi sp. nov., a methylotrophic methanogen isolated from a deep subsurface coal seam

    Doerfert, S. N., Reichlen, M., Iyer, P., Wang, M. & Ferry, J. G., Nov 10 2009, In : International journal of systematic and evolutionary microbiology. 59, 5, p. 1064-1069 6 p.

    Research output: Contribution to journalArticle

    43 Scopus citations

    The archetype γ-class carbonic anhydrase (cam) contains iron when synthesized in vivo

    MacAuley, S. R., Zimmerman, S. A., Apolinario, E. E., Evilia, C., Hou, Y. M., Ferry, J. G. & Sowers, K. R., Feb 10 2009, In : Biochemistry. 48, 5, p. 817-819 3 p.

    Research output: Contribution to journalArticle

    58 Scopus citations

    Tryptophan repressor-binding proteins from Escherichia coli and Archaeoglobus fulgidus as new catalysts for 1,4-dihydronicotinamide adenine dinucleotide-dependent amperometric biosensors and biofuel cells

    Zafar, M. N., Tasca, F., Gorton, L., Patridge, E. V., Ferry, J. G. & Nöll, G., May 15 2009, In : Analytical chemistry. 81, 10, p. 4082-4088 7 p.

    Research output: Contribution to journalArticle

    16 Scopus citations
    2008

    Carbonic anhydrase activators: Activation of the archaeal β-class (Cab) and γ-class (Cam) carbonic anhydrases with amino acids and amines

    Innocenti, A., Zimmerman, S. A., Scozzafava, A., Ferry, J. G. & Supuran, C. T., Dec 1 2008, In : Bioorganic and Medicinal Chemistry Letters. 18, 23, p. 6194-6198 5 p.

    Research output: Contribution to journalArticle

    34 Scopus citations

    Methanogenesis in marine sediments

    Ferry, J. G. & Lessner, D. J., Mar 2008, In : Annals of the New York Academy of Sciences. 1125, p. 147-157 11 p.

    Research output: Contribution to journalArticle

    41 Scopus citations

    Structural and biochemical characterization of flavoredoxin from the archaeon Methanosarcina acetivorans

    Suharti, S., Murakami, K. S., De Vries, S. & Ferry, J. G., Nov 4 2008, In : Biochemistry. 47, 44, p. 11528-11535 8 p.

    Research output: Contribution to journalArticle

    4 Scopus citations
    2007

    Crystal structure of the NADH:quinone oxidoreductase WrbA from Escherichia coli

    Andrade, S. L. A., Patridge, E. V., Ferry, J. G. & Einsle, O., Dec 1 2007, In : Journal of bacteriology. 189, 24, p. 9101-9107 7 p.

    Research output: Contribution to journalArticle

    35 Scopus citations

    Investigation of the Methanosarcina thermophila acetate kinase mechanism by fluorescence quenching

    Gorrell, A. & Ferry, J. G., Dec 11 2007, In : Biochemistry. 46, 49, p. 14170-14176 7 p.

    Research output: Contribution to journalArticle

    15 Scopus citations

    Quantitative proteomic and microarray analysis of the archaeon Methanosarcina acetivorans grown with acetate versus methanol

    Li, L., Li, Q., Rohlin, L., Kim, U. M., Salmon, K., Rejtar, T., Gunsalus, R. P., Karger, B. L. & Ferry, J. G., Feb 1 2007, In : Journal of Proteome Research. 6, 2, p. 759-771 13 p.

    Research output: Contribution to journalArticle

    78 Scopus citations

    The archaeon Methanosarcina acetivorans contains a protein disulfide reductase with an iron-sulfur cluster

    Lessner, D. J. & Ferry, J. G., Oct 1 2007, In : Journal of bacteriology. 189, 20, p. 7475-7484 10 p.

    Research output: Contribution to journalArticle

    18 Scopus citations
    24 Scopus citations
    2006

    An unconventional pathway for reduction of CO2 to methane in CO-grown Methanosarcina acetivorans revealed by proteomics

    Lessner, D. J., Li, L., Li, Q., Rejtar, T., Andreev, V. P., Reichlen, M., Hill, K., Moran, J. J., Karger, B. L. & Ferry, J. G., Nov 21 2006, In : Proceedings of the National Academy of Sciences of the United States of America. 103, 47, p. 17921-17926 6 p.

    Research output: Contribution to journalArticle

    78 Scopus citations

    Electron transport in the pathway of acetate conversion to methane in the marine archaeon Methanosarcina acetivorans

    Li, Q., Li, L., Rejtar, T., Lessner, D. J., Karger, B. L. & Ferry, J. G., Jan 1 2006, In : Journal of bacteriology. 188, 2, p. 702-710 9 p.

    Research output: Contribution to journalArticle

    82 Scopus citations

    Interaction of iron-sulfur flavoprotein with oxygen and hydrogen peroxide

    Cruz, F. & Ferry, J. G., Jun 1 2006, In : Biochimica et Biophysica Acta - General Subjects. 1760, 6, p. 858-864 7 p.

    Research output: Contribution to journalArticle

    16 Scopus citations

    New algorithm for 15N//14N quantitation with LC-ESI-MS using an LTQ-FT mass spectrometer

    Andreev, V. P., Li, L., Rejtar, T., Li, Q., Ferry, J. G. & Karger, B. L., Aug 1 2006, In : Journal of Proteome Research. 5, 8, p. 2039-2045 7 p.

    Research output: Contribution to journalArticle

    31 Scopus citations

    Proposal for a hydrogen bond network in the active site of the prototypic γ-class carbonic anhydrase

    Zimmerman, S. A. & Ferry, J. G., Apr 25 2006, In : Biochemistry. 45, 16, p. 5149-5157 9 p.

    Research output: Contribution to journalArticle

    27 Scopus citations