• 7850 Citations
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1978 …2020

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Article
2020

Transcriptome profiles of Quercus rubra responding to increased O3 stress

Soltani, N., Best, T., Grace, D., Nelms, C., Shumaker, K., Romero-Severson, J., Moses, D., Schuster, S., Staton, M., Carlson, J. & Gwinn, K., Feb 14 2020, In : BMC genomics. 21, 1, 160.

Research output: Contribution to journalArticle

Open Access
2019

Factoring Ecological, Societal, and Economic Considerations into Inoculant Development

Bell, T. H., Kaminsky, L. M., Gugino, B. K., Carlson, J. E., Malik, R. J., Hockett, K. L. & Trexler, R. V., Jun 2019, In : Trends in Biotechnology. 37, 6, p. 572-573 2 p.

Research output: Contribution to journalArticle

Manipulating Wild and Tamed Phytobiomes: Challenges and Opportunities

Bell, T. H., Hockett, K., Alcalá-Briseño, R. I., Barbercheck, M., Beattie, G. A., Bruns, M. A., Carlson, J., Chung, T., Collins, A., Emmett, B., Esker, P., Garrett, K., Glenna, L., Gugino, B. K., Jimenez Gasco, M. D. M., Kinkel, L., Kovac, J., Kowalski, K., Kuldau, G., Leveau, J. & 10 others, Michalska-Smith, M., Myrick, J., Peter, K., Salazar, M. V., Shade, A., Stopnisek, N., Tan, X., Welty, A., Wickings, K. & Yergeau, E., Mar 13 2019, In : Phytobiomes Journal.

Research output: Contribution to journalArticle

2 Scopus citations

NaCl-induced CsRCI2E and CsRCI2F interact with aquaporin CsPIP2;1 to reduce water transport in Camelina sativa L.

Kim, H. S., Park, W., Lim, H. G., Eom, S., Lee, J. H., Carlson, J. E. & Ahn, S. J., May 21 2019, In : Biochemical and Biophysical Research Communications. 513, 1, p. 213-218 6 p.

Research output: Contribution to journalArticle

Neutral Genetic and Phenotypic Variation within and among Isolated Headwater Populations of Brook Trout

Weathers, T. C., Kazyak, D. C., Stauffer, J. R., Kulp, M. A., Moore, S. E., King, T. L. & Carlson, J. E., Jan 2019, In : Transactions of the American Fisheries Society. 148, 1, p. 58-72 15 p.

Research output: Contribution to journalArticle

The first genetic linkage map for Fraxinus pennsylvanica and syntenic relationships with four related species

Wu, D., Koch, J., Coggeshall, M. & Carlson, J., Feb 1 2019, In : Plant molecular biology. 99, 3, p. 251-264 14 p.

Research output: Contribution to journalArticle

1 Scopus citations
2018

Host-plant induced changes in microbial community structure and midgut gene expression in an invasive polyphage (Anoplophora glabripennis

Scully, E. D., Geib, S. M., Mason, C. J., Carlson, J. E., Tien, M., Chen, H. Y., Harding, S., Tsai, C. J. & Hoover, K., Dec 1 2018, In : Scientific reports. 8, 1, 9620.

Research output: Contribution to journalArticle

1 Scopus citations
2017

Construction of a Framework Genetic Linkage Map in Gleditsia triacanthos L

Gailing, O., Staton, M. E., Lane, T., Schlarbaum, S. E., Nipper, R., Owusu, S. A. & Carlson, J. E., Apr 1 2017, In : Plant Molecular Biology Reporter. 35, 2, p. 177-187 11 p.

Research output: Contribution to journalArticle

6 Scopus citations

Development of genic and genomic microsatellites in Gleditsia triacanthos L. (Fabaceae) using illumina sequencing

Wu, Y., Zhang, R., Staton, M., Schlarbaum, S. E., Coggeshall, M. V., Romero-Severson, J., Carlson, J. E., Zembower, N., Liang, H., Xu, Y., Drautz-Moses, D. I., Schuster, S. C. & Gailing, O., Jan 1 2017, In : Annals of Forest Research. 60, 2, p. 343-350 8 p.

Research output: Contribution to journalArticle

3 Scopus citations

Development of novel genic microsatellite markers from transcriptome sequencing in sugar maple (Acer saccharum Marsh.)

Harmon, M., Lane, T., Staton, M., Coggeshall, M. V., Best, T., Chen, C. C., Liang, H., Zembower, N., Drautz-Moses, D. I., Hwee, Y. Z., Schuster, S. C., Schlarbaum, S. E., Carlson, J. E. & Gailing, O., Aug 8 2017, In : BMC Research Notes. 10, 1, 369.

Research output: Contribution to journalArticle

2 Scopus citations

Genome-wide association study identifies a major gene for beech bark disease resistance in American beech (Fagus grandifolia Ehrh.)

Čalić, I., Koch, J., Carey, D., Addo-Quaye, C., Carlson, J. E. & Neale, D. B., Jul 20 2017, In : BMC genomics. 18, 1, 547.

Research output: Contribution to journalArticle

2 Scopus citations

High-quality genetic mapping with ddRADseq in the non-model tree Quercus rubra

Konar, A., Choudhury, O., Bullis, R., Fiedler, L., Kruser, J. M., Stephens, M. T., Gailing, O., Schlarbaum, S., Coggeshall, M. V., Staton, M. E., Carlson, J. E., Emrich, S. & Romero-Severson, J., May 30 2017, In : BMC genomics. 18, 1, 417.

Research output: Contribution to journalArticle

7 Scopus citations
2016

Genome sequence of fusarium isolate MYA-4552 from the midgut of Anoplophora glabripennis, an invasive, wood-boring beetle

Herr, J. R., Scully, E. D., Geib, S. M., Hoover, K., Carlson, J. E. & Geiser, D. M., Jan 1 2016, In : Genome Announcements. 4, 4, e00544-16.

Research output: Contribution to journalArticle

6 Scopus citations

Pollen gene flow and molecular identification of full-sib families in small and isolated population fragments of Gleditsia triacanthos L

Owusu, S. A., Schlarbaum, S. E., Carlson, J. E. & Gailing, O., Mar 28 2016, In : Botany. 94, 7, p. 523-532 10 p.

Research output: Contribution to journalArticle

4 Scopus citations

The green ash transcriptome and identification of genes responding to abiotic and biotic stresses

Lane, T., Best, T., Zembower, N., Davitt, J., Henry, N., Xu, Y., Koch, J., Liang, H., McGraw, J., Schuster, S., Shim, D., Coggeshall, M. V., Carlson, J. E. & Staton, M. E., Sep 2 2016, In : BMC genomics. 17, 1, 702.

Research output: Contribution to journalArticle

8 Scopus citations
2015

Characterization of the transcriptome of the xerophyte ammopiptanthus mongolicus leaves under drought stress by 454 pyrosequencing

Pang, T., Guo, L., Shim, D., Cannon, N., Tang, S., Chen, J., Xia, X., Yin, W. & Carlson, J. E., Aug 27 2015, In : PloS one. 10, 8, e0136495.

Research output: Contribution to journalArticle

6 Scopus citations

Identification of terminal flowering1 (TFL1) genes associated with the teak (Tectona grandis) floral development regulation using RNA-seq

Diningrat, D. S., Widiyanto, S. M., Pancoro, A., Iriawati, Shim, D., Panchangam, B., Zembower, N. & Carlson, J. E., Aug 4 2015, In : Research Journal of Botany. 10, 1, p. 1-13 13 p.

Research output: Contribution to journalArticle

5 Scopus citations

Nuclear microsatellite markers for population genetic studies in sugar maple (Acer saccharum Marsh.)

Khodwekar, S., Staton, M., Coggeshall, M. V., Carlson, J. E. & Gailing, O., Jan 1 2015, In : Annals of Forest Research. 58, 2, p. 193-204 12 p.

Research output: Contribution to journalArticle

7 Scopus citations

Preliminary Genomic Characterization of Ten Hardwood Tree Species from Multiplexed Low Coverage Whole Genome Sequencing

Staton, M., Best, T., Khodwekar, S., Owusu, S., Xu, T., Xu, Y., Jennings, T., Cronn, R., Arumuganathan, A. K., Coggeshall, M., Gailing, O., Liang, H., Romero-Severson, J., Schlarbaum, S. & Carlson, J. E., Dec 1 2015, In : PloS one. 10, 12, e0145031.

Research output: Contribution to journalArticle

14 Scopus citations

Substantial genome synteny preservation among woody angiosperm species: Comparative genomics of Chinese chestnut (Castanea mollissima) and plant reference genomes

Staton, M., Zhebentyayeva, T., Olukolu, B., Fang, G. C., Nelson, D., Carlson, J. E. & Abbott, A. G., Oct 5 2015, In : BMC genomics. 16, 1, 744.

Research output: Contribution to journalArticle

14 Scopus citations

Transcriptome of teak (Tectona grandis, l.f) in vegetative to generative stages development

Diningrat, D. S., Widiyanto, S. M., Pancoro, A., Iriawati, Shim, D., Panchangam, B., Zembower, N. & Carlson, J. E., Jan 1 2015, In : Journal of Plant Sciences. 10, 1, p. 1-14 14 p.

Research output: Contribution to journalArticle

6 Scopus citations
2014
40 Scopus citations

Genome and secretome analysis of the hemibiotrophic fungal pathogen, Moniliophthora roreri, which causes frosty pod rot disease of cacao: Mechanisms of the biotrophic and necrotrophic phases

Meinhardt, L. W., Costa, G. G. L., Thomazella, D. P. T., Teixeira, P. J. P. L., Carazzolle, M. F., Schuster, S. C., Carlson, J. E., Guiltinan, M. J., Mieczkowski, P., Farmer, A., Ramaraj, T., Crozier, J., Davis, R. E., Shao, J., Melnick, R. L., Pereira, G. A. G. & Bailey, B. A., Feb 27 2014, In : BMC genomics. 15, 1, 164.

Research output: Contribution to journalArticle

52 Scopus citations
11 Scopus citations

The forest health initiative, american chestnut (Castanea dentata) as a model for forest tree restoration: Biological research program

Nelson, C. D., Powell, W. A., Maynard, C. A., Baier, K. M., Newhouse, A., Merkle, S. A., Nairn, C. J., Kong, L., Carlson, J. E., Addo-Quaye, C., Staton, M. E., Hebard, F. V., Georgi, L. L., Abbott, A. G., Olukolu, B. A. & Zhebentyayeva, T., Dec 2 2014, In : Acta Horticulturae. 1019, p. 179-190 12 p.

Research output: Contribution to journalArticle

6 Scopus citations
2013

A physical map of the Chinese chestnut (Castanea mollissima) genome and its integration with the genetic map

Fang, G. C., Blackmon, B. P., Staton, M. E., Nelson, C. D., Kubisiak, T. L., Olukolu, B. A., Henry, D., Zhebentyayeva, T., Saski, C. A., Cheng, C. H., Monsanto, M., Ficklin, S., Atkins, M., Georgi, L. L., Barakat, A., Wheeler, N., Carlson, J. E., Sederoff, R. & Abbott, A. G., Jan 1 2013, In : Tree Genetics and Genomes. 9, 2, p. 525-537 13 p.

Research output: Contribution to journalArticle

21 Scopus citations

Cold stress causes rapid but differential changes in properties of plasma membrane H+-ATPase of camelina and rapeseed

Kim, H. S., Oh, J. M., Luan, S., Carlson, J. E. & Ahn, S. J., Feb 11 2013, In : Journal of Plant Physiology. 170, 9, p. 828-837 10 p.

Research output: Contribution to journalArticle

34 Scopus citations

Fagaceae trees as models to integrate ecology, evolution and genomics

Petit, R. J., Carlson, J., Curtu, A. L., Loustau, M. L., Plomion, C., González-Rodríguez, A., Sork, V. & Ducousso, A., Jan 1 2013, In : New Phytologist. 197, 2, p. 369-371 3 p.

Research output: Contribution to journalArticle

21 Scopus citations

Metagenomic Profiling Reveals Lignocellulose Degrading System in a Microbial Community Associated with a Wood-Feeding Beetle

Scully, E. D., Geib, S. M., Hoover, K., Tien, M., Tringe, S. G., Barry, K. W., Glavina del Rio, T., Chovatia, M., Herr, J. R. & Carlson, J. E., Sep 4 2013, In : PloS one. 8, 9, e73827.

Research output: Contribution to journalArticle

61 Scopus citations

Midgut transcriptome profiling of Anoplophora glabripennis, a lignocellulose degrading cerambycid beetle

Scully, E. D., Hoover, K., Carlson, J. E., Tien, M. & Geib, S. M., Dec 4 2013, In : BMC genomics. 14, 1, 850.

Research output: Contribution to journalArticle

44 Scopus citations

Populus euphratica: The transcriptomic response to drought stress

Tang, S., Liang, H., Yan, D., Zhao, Y., Han, X., Carlson, J. E., Xia, X. & Yin, W., Dec 1 2013, In : Plant molecular biology. 83, 6, p. 539-557 19 p.

Research output: Contribution to journalArticle

50 Scopus citations

Two aquaporins of Jatropha are regulated differentially during drought stress and subsequent recovery

Jang, H. Y., Yang, S. W., Carlson, J. E., Ku, Y. G. & Ahn, S. J., Jul 15 2013, In : Journal of Plant Physiology. 170, 11, p. 1028-1038 11 p.

Research output: Contribution to journalArticle

13 Scopus citations

Wood chemistry analysis and expression profiling of a poplar clone expressing a tyrosine-rich peptide

Xu, Y., Chen, C. F., Thomas, T. P., Azadi, P., Diehl, B., Tsai, C. J., Brown, N., Carlson, J. E., Tien, M. & Liang, H., Dec 1 2013, In : Plant Cell Reports. 32, 12, p. 1827-1841 15 p.

Research output: Contribution to journalArticle

4 Scopus citations
2012

A petiole-galling insect herbivore decelerates leaf lamina litter decomposition rates

Frost, C. J., Dean, J. M., Smyers, E. C., Mescher, M. C., Carlson, J. E., De Moraes, C. M. & Tooker, J. F., Jun 1 2012, In : Functional Ecology. 26, 3, p. 628-636 9 p.

Research output: Contribution to journalArticle

10 Scopus citations

Chestnut resistance to the blight disease: Insights from transcriptome analysis

Barakat, A., Staton, M., Cheng, C. H., Park, J., Yassin, N. B. M., Ficklin, S., Yeh, C. C., Hebard, F., Baier, K., Powell, W., Schuster, S. C., Wheeler, N., Abbott, A., Carlson, J. E. & Sederoff, R., Mar 19 2012, In : BMC plant biology. 12, 38.

Research output: Contribution to journalArticle

46 Scopus citations

Overexpression of Constans Homologs CO1 and CO2 Fails to Alter Normal Reproductive Onset and Fall Bud Set in Woody Perennial Poplar

Hsu, C. Y., Adams, J. P., No, K., Liang, H., Meilan, R., Pechanova, O., Barakat, A., Carlson, J. E., Page, G. P. & Yuceer, C., Sep 19 2012, In : PloS one. 7, 9, e45448.

Research output: Contribution to journalArticle

38 Scopus citations

Phylogenetic analysis of Fusarium solani associated with the Asian longhorned beetle, Anoplophora glabripennis

Geib, S. M., Scully, E. D., del Mar Jimenez-Gasco, M., Carlson, J. E., Tien, M. & Hoover, K., Dec 1 2012, In : Insects. 3, 1, p. 141-160 20 p.

Research output: Contribution to journalArticle

13 Scopus citations

Proteomic analysis of fusarium solani isolated from the asian longhorned beetle, anoplophora glabripennis

Scully, E. D., Hoover, K., Carlson, J., Tien, M. & Geib, S. M., Apr 9 2012, In : PloS one. 7, 4, e32990.

Research output: Contribution to journalArticle

23 Scopus citations

The mitochondrial genome of Moniliophthora roreri, the frosty pod rot pathogen of cacao

Costa, G. G. L., Cabrera, O. G., Tiburcio, R. A., Medrano, F. J., Carazzolle, M. F., Thomazella, D. P. T., Schuster, S. C., Carlson, J. E., Guiltinan, M. J., Bailey, B. A., Mieczkowski, P., Pereira, G. A. G. & Meinhardt, L. W., May 1 2012, In : Fungal Biology. 116, 5, p. 551-562 12 p.

Research output: Contribution to journalArticle

10 Scopus citations
2011

A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure

Zuccolo, A., Bowers, J. E., Estill, J. C., Xiong, Z., Luo, M., Sebastian, A., Goicoechea, J. L., Collura, K., Yu, Y., Jiao, Y., Duarte, J., Tang, H., Ayyampalayam, S., Rounsley, S., Kudrna, D., Paterson, A. H., Pires, J. C., Chanderbali, A., Soltis, D. E., Chamala, S. & 11 others, Barbazuk, B., Soltis, P. S., Albert, V. A., Ma, H., Mandoli, D., Banks, J., Carlson, J. E., Tomkins, J., dePamphilis, C. W., Wing, R. A. & Leebens-Mack, J., May 27 2011, In : Genome biology. 12, 5, R48.

Research output: Contribution to journalArticle

20 Scopus citations

A successful application of the embryo rescue technique as a model for studying crosses between Salix viminalis and Populus species

Bagniewska-Zadworna, A., Zenkteler, M., Zenkteler, E., Wojciechowicz, M. K., Barakat, A. & Carlson, J. E., Jun 29 2011, In : Australian Journal of Botany. 59, 4, p. 382-392 11 p.

Research output: Contribution to journalArticle

10 Scopus citations

Comparative and phylogenomic analyses of cinnamoyl-CoA reductase and cinnamoyl-CoA-reductase-like gene family in land plants

Barakat, A., Yassin, N. B. M., Park, J. S., Choi, A., Herr, J. & Carlson, J. E., Sep 1 2011, In : Plant Science. 181, 3, p. 249-257 9 p.

Research output: Contribution to journalArticle

24 Scopus citations

Comparative genomics and evolutionary analyses of the O-methyltransferase gene family in Populus

Barakat, A., Choi, A., Yassin, N. B. M., Park, J. S., Sun, Z. & Carlson, J. E., Jun 15 2011, In : Gene. 479, 1-2, p. 37-46 10 p.

Research output: Contribution to journalArticle

20 Scopus citations

FLOWERING LOCUS T duplication coordinates reproductive and vegetative growth in perennial poplar

Hsu, C. Y., Adams, J. P., Kim, H., No, K., Ma, C., Strauss, S. H., Drnevich, J., Vandervelde, L., Ellis, J. D., Rice, B. M., Wickett, N., Gunter, L. E., Tuskan, G. A., Brunner, A. M., Page, G. P., Barakat, A., Carlson, J. E., DePamphilis, C. W., Luthe, D. S. & Yuceer, C., Jun 28 2011, In : Proceedings of the National Academy of Sciences of the United States of America. 108, 26, p. 10756-10761 6 p.

Research output: Contribution to journalArticle

244 Scopus citations

Organization of the chromosome region harboring a FLORICAULA/LEAFY gene in Liriodendron

Liang, H., Barakat, A., Schlarbaum, S. E. & Carlson, J. E., Apr 1 2011, In : Tree Genetics and Genomes. 7, 2, p. 373-384 12 p.

Research output: Contribution to journalArticle

4 Scopus citations

The genome of Theobroma cacao

Argout, X., Salse, J., Aury, J. M., Guiltinan, M. J., Droc, G., Gouzy, J., Allegre, M., Chaparro, C., Legavre, T., Maximova, S. N., Abrouk, M., Murat, F., Fouet, O., Poulain, J., Ruiz, M., Roguet, Y., Rodier-Goud, M., Barbosa-Neto, J. F., Sabot, F., Kudrna, D. & 41 others, Ammiraju, J. S. S., Schuster, S. C., Carlson, J. E., Sallet, E., Schiex, T., Dievart, A., Kramer, M., Gelley, L., Shi, Z., Bérard, A., Viot, C., Boccara, M., Risterucci, A. M., Guignon, V., Sabau, X., Axtell, M. J., Ma, Z., Zhang, Y., Brown, S., Bourge, M., Golser, W., Song, X., Clement, D., Rivallan, R., Tahi, M., Akaza, J. M., Pitollat, B., Gramacho, K., D'Hont, A., Brunel, D., Infante, D., Kebe, I., Costet, P., Wing, R., McCombie, W. R., Guiderdoni, E., Quetier, F., Panaud, O., Wincker, P., Bocs, S. & Lanaud, C., Feb 2011, In : Nature Genetics. 43, 2, p. 101-108 8 p.

Research output: Contribution to journalArticle

380 Scopus citations
2010

Comparison of gene order of GIGANTEA loci in yellow-poplar, monocots, and eudicots.

Liang, H., Barakat, A., Schlarbaum, S. E., Mandoli, D. F. & Carlson, J. E., Jul 1 2010, In : Genome / National Research Council Canada = Génome / Conseil national de recherches Canada. 53, 7, p. 533-544 12 p.

Research output: Contribution to journalArticle

6 Scopus citations

Genes acquired by horizontal transfer are potentially involved in the evolution of phytopathogenicity in moniliophthora perniciosa and moniliophthora roreri, two of the major pathogens of cacao

Tiburcio, R. A., Costa, G. G. L., Carazzolle, M. F., Mondego, J. M. C., Schuster, S. C., Carlson, J. E., Guiltinan, M., Bailey, B. A., Mieczkowski, P., Meinhardt, L. W. & Pereira, G. A. G., Jan 1 2010, In : Journal of Molecular Evolution. 70, 1, p. 85-97 13 p.

Research output: Contribution to journalArticle

28 Scopus citations
42 Scopus citations

Shotgun proteomic analysis of yeast-elicited California poppy (Eschscholzia californica) suspension cultures producing enhanced levels of benzophenanthridine alkaloids

Oldham, J. T., Hincapie, M., Rejtar, T., Wall, P. K., Carlson, J. E. & Lee-Parsons, C. W. T., Sep 3 2010, In : Journal of Proteome Research. 9, 9, p. 4337-4345 9 p.

Research output: Contribution to journalArticle

10 Scopus citations