• 2921 Citations
  • 29 h-Index
1988 …2020
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Research Output 1988 2019

2019
1 Citation (Scopus)

Analysis of RNAPII complexes

Reese, J. C., Apr 15 2019, In : Methods. 159-160, p. 1-3 3 p.

Research output: Contribution to journalEditorial

2 Citations (Scopus)

Biochemical methods to characterize RNA polymerase II elongation complexes

Brooks Crickard, J. & Reese, J. C., Apr 15 2019, In : Methods. 159-160, p. 70-81 12 p.

Research output: Contribution to journalArticle

RNA Polymerase II
Elongation
Transcription
Peptide Elongation Factors
DNA
2 Citations (Scopus)

Ccr4–not maintains genomic integrity by controlling the ubiquitylation and degradation of arrested RNAPII

Jiang, H., Wolgast, M., Beebe, L. M. & Reese, J. C., Jun 1 2019, In : Genes and Development. 33, 11-12, p. 705-717 13 p.

Research output: Contribution to journalArticle

Open Access
RNA Polymerase II
Ubiquitination
DNA Damage
Ligases
Ubiquitin
3 Citations (Scopus)

Single-molecule FRET method to investigate the dynamics of transcription elongation through the nucleosome by RNA polymerase II

Lee, J., Crickard, J. B., Reese, J. C. & Lee, T., Apr 15 2019, In : Methods. 159-160, p. 51-58 8 p.

Research output: Contribution to journalReview article

Nucleosomes
RNA Polymerase II
Transcription
Elongation
Molecules
2018
5 Citations (Scopus)

Genome-wide mapping of decay factor-mRNA interactions in yeast identifies nutrient-responsive transcripts as targets of the deadenylase Ccr4

Miller, J. E., Zhang, L., Jiang, H., Li, Y., Pugh, B. F. & Reese, J. C., Jan 1 2018, In : G3: Genes, Genomes, Genetics. 8, 1, p. 315-330 16 p.

Research output: Contribution to journalArticle

Catabolite Repression
Chromosome Mapping
RNA Stability
Yeasts
Food

Regulation of tRNA synthesis and modification in physiological conditions and disease

Boguta, M. & Reese, J. C., Apr 1 2018, In : Biochimica et Biophysica Acta - Gene Regulatory Mechanisms. 1861, 4, p. 283-284 2 p.

Research output: Contribution to journalEditorial

Post Transcriptional RNA Processing
Genetic Transcription
RNA Polymerase III
Gene Expression Regulation
Transfer RNA
2017
6 Citations (Scopus)

The elongation factor Spt4/5 regulates RNA polymerase II transcription through the nucleosome

Crickard, J. B., Lee, J., Lee, T. H. & Reese, J. C., Jun 1 2017, In : Nucleic acids research. 45, 11, p. 6362-6374 13 p.

Research output: Contribution to journalArticle

Peptide Elongation Factors
Nucleosomes
RNA Polymerase II
Histones
DNA
2016
25 Citations (Scopus)
RNA Polymerase II
Yeast
Nucleic Acids
Elongation
Peptide Elongation Factors
2015
25 Citations (Scopus)

Ccr4-Not and TFIIS function cooperatively to rescue arrested RNA polymerase II

Dutta, A., Babbarwal, V., Fu, J., Brunke-Reese, D., Libert, D. M., Willis, J. & Reese, J. C., Jan 1 2015, In : Molecular and cellular biology. 35, 11, p. 1915-1925 11 p.

Research output: Contribution to journalArticle

RNA Polymerase II
Peptide Elongation Factors
Saccharomyces cerevisiae
transcription factor S-II
Yeasts
2014
19 Citations (Scopus)

A highly conserved region within H2B is important for FACT to act on nucleosomes

Zheng, S., Crickard, J. B., Srikanth, A. & Reese, J. C., Feb 1 2014, In : Molecular and cellular biology. 34, 3, p. 303-314 12 p.

Research output: Contribution to journalArticle

Nucleosomes
Histones
Chromatin
Histone Chaperones
Eukaryota
3 Citations (Scopus)
RNA Stability
Eukaryota
Spain
Cytoplasm
RNA-Binding Proteins
17 Citations (Scopus)
Repressor Proteins
RNA Polymerase II
Elongation
Carbon
RNA Stability
2013
26 Citations (Scopus)

The control of elongation by the yeast Ccr4-Not complex

Reese, J. C., Jan 1 2013, In : Biochimica et Biophysica Acta - Gene Regulatory Mechanisms. 1829, 1, p. 127-133 7 p.

Research output: Contribution to journalReview article

RNA Polymerase II
Yeast
Elongation
Yeasts
Transcription

Transcription by Odd Pols

Bhargava, P. & Reese, J. C., Mar 1 2013, In : Biochimica et Biophysica Acta - Gene Regulatory Mechanisms. 1829, 3-4, p. 249-250 2 p.

Research output: Contribution to journalEditorial

RNA Polymerase I
RNA Polymerase III
Transcription
Animals
2012
83 Citations (Scopus)

Ccr4-Not complex: The control freak of eukaryotic cells

Miller, J. E. & Reese, J. C., Jul 1 2012, In : Critical Reviews in Biochemistry and Molecular Biology. 47, 4, p. 315-333 19 p.

Research output: Contribution to journalReview article

Catabolite Repression
Eukaryotic Cells
Carbon
Gene expression
Messenger RNA
2011
29 Citations (Scopus)

Intermolecular interactions within the abundant DEAD-box protein Dhh1 regulate its activity in Vivo

Dutta, A., Zheng, S., Jain, D., Cameron, C. E. & Reese, J. C., Aug 5 2011, In : Journal of Biological Chemistry. 286, 31, p. 27454-27470 17 p.

Research output: Contribution to journalArticle

RNA Helicases
Adenosine Triphosphatases
Adenosine Triphosphate
RNA
Mutagenesis
90 Citations (Scopus)

The multifunctional Ccr4-Not complex directly promotes transcription elongation

Kruk, J. A., Dutta, A., Fu, J., Gilmour, D. S. & Reese, J. C., Mar 15 2011, In : Genes and Development. 25, 6, p. 581-593 13 p.

Research output: Contribution to journalArticle

RNA Polymerase II
Peptide Elongation Factors
Messenger RNA
Genes
Proteins
2010
32 Citations (Scopus)

Novel trans-tail regulation of H2B ubiquitylation and H3K4 methylation by the N terminus of histone H2A

Zheng, S., Wyrick, J. J. & Reese, J. C., Jul 1 2010, In : Molecular and cellular biology. 30, 14, p. 3635-3645 11 p.

Research output: Contribution to journalArticle

Histone Code
Nucleosomes
Ubiquitination
Histones
Methylation
13 Citations (Scopus)

SET domains of histone methyltransferases recognize ISWI-remodeled nucleosomal species

Krajewski, W. A. & Reese, J. C., Feb 1 2010, In : Molecular and cellular biology. 30, 3, p. 552-564 13 p.

Research output: Contribution to journalArticle

Nucleosomes
Chromatin
Histones
Methylation
Polycomb-Group Proteins
36 Citations (Scopus)

The MYST family histone acetyltransferase regulates gene expression and cell cycle in malaria parasite Plasmodium falciparum

Miao, J., Fan, Q., Cui, L., Li, X., Wang, H., Ning, G., Reese, J. C. & Cui, L., Nov 1 2010, In : Molecular Microbiology. 78, 4, p. 883-902 20 p.

Research output: Contribution to journalArticle

Histone Acetyltransferases
Falciparum Malaria
Plasmodium falciparum
Cell Cycle
Parasites
2009
10 Citations (Scopus)

A novel mechanism of antagonism between ATP-dependent chromatin remodeling complexes regulates RNR3 expression

Tomar, R. S., Psathas, J. N., Zhang, H., Zhang, Z. & Reese, J. C., Jun 1 2009, In : Molecular and cellular biology. 29, 12, p. 3255-3265 11 p.

Research output: Contribution to journalArticle

Chromatin Assembly and Disassembly
Nucleosomes
Adenosine Triphosphate
Chromatin
General Transcription Factors

Preface to Special Issue on Epigenetics

Tan, S. & Reese, J., Jan 1 2009, In : Biochimica et Biophysica Acta - Gene Regulatory Mechanisms. 1789, 1, p. 1-2 2 p.

Research output: Contribution to journalEditorial

Genetic Epigenesis
Genetic Transcription
Epigenomics
Histones
14 Citations (Scopus)

Set2-dependent K36 methylation is regulated by novel intratail interactions within H3

Psathas, J. N., Zheng, S., Tan, S. & Reese, J. C., Dec 1 2009, In : Molecular and cellular biology. 29, 24, p. 6413-6426 14 p.

Research output: Contribution to journalArticle

Methylation
Chromatin Assembly and Disassembly
Post Translational Protein Processing
Glutamine
Histones
37 Citations (Scopus)

The C-terminal domain of CENP-C displays multiple and critical functions for mammalian centromere formation

Trazzi, S., Perini, G., Bernardoni, R., Zoli, M., Reese, J. C., Musacchio, A. & Della Valle, G., Jun 8 2009, In : PloS one. 4, 6, e5832.

Research output: Contribution to journalArticle

Centromere
centromeres
sequence homology
kinetochores
Homo
2008
17 Citations (Scopus)

Dissection of coactivator requirement at RNR3 reveals unexpected contributions from TFIID and SAGA

Zhang, H., Kruk, J. A. & Reese, J. C., Oct 10 2008, In : Journal of Biological Chemistry. 283, 41, p. 27360-27368 9 p.

Research output: Contribution to journalArticle

Transcription Factor TFIID
Ribonucleotide Reductases
Dissection
TATA-Box Binding Protein
Genes
Histone Deacetylases
Transcriptional Activation
DNA Damage
Cell Biology
Molecular Biology
2 Citations (Scopus)

Isolation of highly purified yeast nuclei for nuclease mapping of chromatin structure

Reese, J. C., Zhang, H. & Zhang, Z., Dec 1 2008, The Nucleus: Volume 1: Nuclei and Subnuclear Components. p. 43-53 11 p. (Methods in Molecular Biology; vol. 463).

Research output: Chapter in Book/Report/Conference proceedingChapter

Chromatin
Yeasts
Micrococcal Nuclease
Nucleosomes
Saccharomycetales

Isolation of highly purified yeast nuclei for nuclease mapping of chromatin structure

Reese, J. C., Zhang, H. & Zhang, Z., Jan 1 2008, In : Methods in molecular biology (Clifton, N.J.). 463, p. 43-53 11 p.

Research output: Contribution to journalArticle

Chromatin
Yeasts
Micrococcal Nuclease
Nucleosomes
Saccharomycetales
21 Citations (Scopus)

Yeast Rap1 contributes to genomic integrity by activating DNA damage repair genes

Tomar, R. S., Zheng, S., Brunke-Reese, D., Wolcott, H. N. & Reese, J. C., Jun 4 2008, In : EMBO Journal. 27, 11, p. 1575-1584 10 p.

Research output: Contribution to journalArticle

Repressor Proteins
Fungal Proteins
Transcription Factor AP-1
DNA Repair
Yeast
2007
29 Citations (Scopus)
Nucleosomes
Transcription Factor TFIID
Chromatin Assembly and Disassembly
General Transcription Factors
Genes
68 Citations (Scopus)

Histone deacetylases RPD3 and HOS2 regulate the transcriptional activation of DNA damage-inducible genes

Sharma, V. M., Tomar, R. S., Dempsey, A. E. & Reese, J. C., Apr 1 2007, In : Molecular and cellular biology. 27, 8, p. 3199-3210 12 p.

Research output: Contribution to journalArticle

Histone Deacetylases
Transcriptional Activation
DNA Damage
Histones
Transcription Factor TFIID
2006
14 Citations (Scopus)

Isolation of yeast nuclei and micrococcal nuclease mapping of nucleosome positioning.

Zhang, Z. & Reese, J. C., Jan 1 2006, In : Methods in molecular biology (Clifton, N.J.). 313, p. 245-255 11 p.

Research output: Contribution to journalArticle

Micrococcal Nuclease
Nucleosomes
Chromatin
Yeasts
Saccharomycetales
2005
26 Citations (Scopus)

Molecular genetic analysis of the yeast repressor Rfx1/Crt1 reveals a novel two-step regulatory mechanism

Zhang, Z. & Reese, J. C., Sep 1 2005, In : Molecular and cellular biology. 25, 17, p. 7399-7411 13 p.

Research output: Contribution to journalArticle

DNA Damage
Molecular Biology
Yeasts
Transcription Factor TFIID
Activator Appliances
13 Citations (Scopus)

Yeast recombination enhancer is stimulated by transcription activation

Ercan, S., Reese, J. C., Workman, J. L. & Simpson, R. T., Sep 1 2005, In : Molecular and cellular biology. 25, 18, p. 7976-7987 12 p.

Research output: Contribution to journalArticle

Transcriptional Activation
Genetic Recombination
Yeasts
Untranslated RNA
Chromatin
2004
26 Citations (Scopus)

An essential role for the Saccharomyces cerevisiae DEAD-box helicase DHH1 in G1/S DNA-damage checkpoint recovery

Bergkessel, M. & Reese, J. C., May 1 2004, In : Genetics. 167, 1, p. 21-33 13 p.

Research output: Contribution to journalArticle

DNA Damage
G1 Phase Cell Cycle Checkpoints
Saccharomyces cerevisiae
Cell Cycle
DEAD-box RNA Helicases
57 Citations (Scopus)

Redundant mechanisms are used by Ssn6-Tup1 in repressing chromosomal gene transcription in Saccharomyces cerevisiae

Zhang, Z. & Reese, J. C., Sep 17 2004, In : Journal of Biological Chemistry. 279, 38, p. 39240-39250 11 p.

Research output: Contribution to journalArticle

Transcription
Yeast
Saccharomyces cerevisiae
Genes
Nucleosomes
56 Citations (Scopus)

Ssn6-Tup1 requires the ISW2 complex to position nucleosomes in Saccharomyces cerevisiae

Zhang, Z. & Reese, J. C., Jun 2 2004, In : EMBO Journal. 23, 11, p. 2246-2257 12 p.

Research output: Contribution to journalArticle

Nucleosomes
Yeast
Saccharomyces cerevisiae
Chromatin
Chromatin Assembly and Disassembly
2003
47 Citations (Scopus)

Basal transcription factors

Reese, J. C., Jan 1 2003, In : Current Opinion in Genetics and Development. 13, 2, p. 114-118 5 p.

Research output: Contribution to journalReview article

RNA Polymerase II
Transcription Factors
12 Citations (Scopus)

Functional Analysis of TFIID Components Using Conditional Mutants

Reese, J. C. & Green, M. R., Jan 1 2003, In : Methods in enzymology. 370, p. 415-430 16 p.

Research output: Contribution to journalArticle

Transcription Factor TFIID
60 Citations (Scopus)

SWI/SNF-dependent chromatin remodeling of RNR3 requires TAFIIs and the general transcription machinery

Sharma, V. M., Li, B. & Reese, J. C., Feb 15 2003, In : Genes and Development. 17, 4, p. 502-515 14 p.

Research output: Contribution to journalArticle

Chromatin Assembly and Disassembly
RNA Polymerase II
Transcription Factor TFIID
General Transcription Factors
Nucleosomes
2002
24 Citations (Scopus)

Adenovirus E1A requires the yeast SAGA histone acetyltransferase complex and associates with SAGA components Gcn5 and Tra1

Kulesza, C. A., Van Buskirk, H. A., Cole, M. D., Reese, J. C., Smith, M. M. & Engel, D. A., Jan 1 2002, In : Oncogene. 21, 9, p. 1411-1422 12 p.

Research output: Contribution to journalArticle

Histone Acetyltransferases
Adenoviridae
Yeasts
Proteins
Transcriptional Activation
2001
32 Citations (Scopus)

Analysis of TAF90 mutants displaying allele-specific and broad defects in transcription

Durso, R. J., Fisher, A. K., Albright-Frey, T. J. & Reese, J. C., Oct 22 2001, In : Molecular and cellular biology. 21, 21, p. 7331-7344 14 p.

Research output: Contribution to journalArticle

Transcription Factor TFIID
Histone Acetyltransferases
Alleles
General Transcription Factors
Mutation
7 Citations (Scopus)

Genetic analysis of TAF68/61 reveals links to cell cycle regulators

Reese, J. C. & Green, M. R., Oct 31 2001, In : Yeast. 18, 13, p. 1197-1205 9 p.

Research output: Contribution to journalArticle

Suppressor Genes
Cell Cycle
Cells
Cell Cycle Checkpoints
Genes
123 Citations (Scopus)

Promoter targeting of chromatin-modifying complexes.

Hassan, A. H., Neely, K. E., Vignali, M., Reese, J. C. & Workman, J. L., Jan 1 2001, In : Frontiers in bioscience : a journal and virtual library. 6

Research output: Contribution to journalReview article

Chromatin
Histone Acetyltransferases
Genes
Histone Deacetylases
Histones
56 Citations (Scopus)
Nucleosomes
Chromatin
Transcription
Genes
Ribonucleotide Reductases
29 Citations (Scopus)

The proteasome regulates the UV-induced activation of the AP-1-like transcription factor Gcn4

Stitzel, M. L., Durso, R. & Reese, J. C., Jan 15 2001, In : Genes and Development. 15, 2, p. 128-133 6 p.

Research output: Contribution to journalArticle

Transcription Factor AP-1
Proteasome Endopeptidase Complex
Genes
Cell Cycle
Phenotype
2000
28 Citations (Scopus)

Derepression of DNA damage-regulated genes requires yeast TAF(II)s

Li, B. & Reese, J. C., Aug 1 2000, In : EMBO Journal. 19, 15, p. 4091-4100 10 p.

Research output: Contribution to journalArticle

Transcription Factor TFIID
Yeast
DNA Damage
Genes
Yeasts
36 Citations (Scopus)

Identification of a yeast transcription factor IID subunit, TSG2/TAF48

Reese, J. C., Zhang, Z. & Kurpad, H., Jun 9 2000, In : Journal of Biological Chemistry. 275, 23, p. 17391-17398 8 p.

Research output: Contribution to journalArticle

TATA-Binding Protein Associated Factors
Transcription Factor TFIID
Yeast
Yeasts
TATA-Box Binding Protein
1998
363 Citations (Scopus)

A subset of TAF(II)s are integral components of the SAGA complex required for nucleosome acetylation and transcriptional stimulation

Grant, P. A., Schieltz, D., Pray-Grant, M. G., Steger, D. J., Reese, J. C., Yates, J. R. & Workman, J. L., Jul 10 1998, In : Cell. 94, 1, p. 45-53 9 p.

Research output: Contribution to journalArticle

Acetylation
Acetyltransferases
Nucleosomes
Histone Acetyltransferases
Transcriptional Activation
1997
51 Citations (Scopus)

Functional antagonism between RNA polymerase II holoenzyme and global negative regulator NC2 in vivo

Gadbois, E. L., Chao, D. M., Reese, J. C., Green, M. R. & Young, R. A., Apr 1 1997, In : Proceedings of the National Academy of Sciences of the United States of America. 94, 7, p. 3145-3150 6 p.

Research output: Contribution to journalArticle

Holoenzymes
RNA Polymerase II
MHC Class II Genes
Yeasts
General Transcription Factors