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Research Output

  • 234 Citations
  • 11 h-Index
  • 13 Article
  • 4 Conference article
  • 3 Review article
  • 1 Chapter
2019

CLARITE Facilitates the Quality Control and Analysis Process for EWAS of Metabolic-Related Traits

Lucas, A. M., Palmiero, N. E., McGuigan, J., Passero, K., Zhou, J., Orie, D., Ritchie, M. D. & Hall, M. A., Dec 18 2019, In : Frontiers in Genetics. 10, 1240.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations
2018

Gene-gene interactions: An essential component to modeling complexity for precision medicine

Hall, M. A., Cole, B. S. & Moore, J. H., Jan 1 2018, Encyclopedia of Bioinformatics and Computational Biology: ABC of Bioinformatics. Elsevier, Vol. 1-3. p. 171-177 7 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Leveraging putative enhancer-promoter interactions to investigate two-way epistasis in Type 2 Diabetes GWAS

Manduchi, E., Chesi, A., Hall, M. A., Grant, S. F. A. & Moore, J. H., Jan 1 2018, In : Pacific Symposium on Biocomputing. 0, 212669, p. 548-558 11 p.

Research output: Contribution to journalConference article

2 Scopus citations
2017

Analysis of Gene-Gene Interactions

Cole, B. S., Hall, M. A., Urbanowicz, R. J., Gilbert-Diamond, D. & Moore, J. H., Oct 2017, In : Current protocols in human genetics. 95, 1, p. 1.14.1-1.14.10

Research output: Contribution to journalReview article

2 Scopus citations

Discovery and replication of SNP-SNP interactions for quantitative lipid traits in over 60,000 individuals

Holzinger, E. R., Verma, S. S., Moore, C. B., Hall, M., De, R., Gilbert-Diamond, D., Lanktree, M. B., Pankratz, N., Amuzu, A., Burt, A., Dale, C., Dudek, S., Furlong, C. E., Gaunt, T. R., Kim, D. S., Riess, H., Sivapalaratnam, S., Tragante, V., Van Iperen, E. P. A., Brautbar, A. & 32 others, Carrell, D. S., Crosslin, D. R., Jarvik, G. P., Kuivaniemi, H., Kullo, I. J., Larson, E. B., Rasmussen-Torvik, L. J., Tromp, G., Baumert, J., Cruickshanks, K. J., Farrall, M., Hingorani, A. D., Hovingh, G. K., Kleber, M. E., Klein, B. E., Klein, R., Koenig, W., Lange, L. A., MOrz, W., North, K. E., Charlotte Onland-Moret, N., Reiner, A. P., Talmud, P. J., Van Der Schouw, Y. T., Wilson, J. G., Kivimaki, M., Kumari, M., Moore, J. H., Drenos, F., Asselbergs, F. W., Keating, B. J. & Ritchie, M. D., Jul 24 2017, In : BioData Mining. 10, 1, 25.

Research output: Contribution to journalArticle

1 Scopus citations

Identifying gene–gene interactions that are highly associated with four quantitative lipid traits across multiple cohorts

De, R., Verma, S. S., Holzinger, E., Hall, M., Burt, A., Carrell, D. S., Crosslin, D. R., Jarvik, G. P., Kuivaniemi, H., Kullo, I. J., Lange, L. A., Lanktree, M. B., Larson, E. B., North, K. E., Reiner, A. P., Tragante, V., Tromp, G., Wilson, J. G., Asselbergs, F. W., Drenos, F. & 4 others, Moore, J. H., Ritchie, M. D., Keating, B. & Gilbert-Diamond, D., Feb 1 2017, In : Human genetics. 136, 2, p. 165-178 14 p.

Research output: Contribution to journalArticle

4 Scopus citations

Informatics and Data Analytics to Support Exposome-Based Discovery for Public Health

Manrai, A. K., Cui, Y., Bushel, P. R., Hall, M., Karakitsios, S., Mattingly, C. J., Ritchie, M., Schmitt, C., Sarigiannis, D. A., Thomas, D. C., Wishart, D., Balshaw, D. M. & Patel, C. J., Mar 20 2017, In : Annual Review of Public Health. 38, p. 279-294 16 p.

Research output: Contribution to journalReview article

32 Scopus citations

PLATO software provides analytic framework for investigating complexity beyond genome-wide association studies

Hall, M. A., Wallace, J., Lucas, A., Kim, D., Basile, A. O., Verma, S. S., McCarty, C. A., Brilliant, M. H., Peissig, P. L., Kitchner, T. E., Verma, A., Pendergrass, S. A., Dudek, S. M., Moore, J. H. & Ritchie, M. D., Dec 1 2017, In : Nature communications. 8, 1, 1167.

Research output: Contribution to journalArticle

9 Scopus citations

The joint effect of air pollution exposure and copy number variation on risk for autism

Kim, D., Volk, H., Girirajan, S., Pendergrass, S., Hall, M. A., Verma, S. S., Schmidt, R. J., Hansen, R. L., Ghosh, D., Ludena-Rodriguez, Y., Kim, K., Ritchie, M. D., Hertz-Picciotto, I. & Selleck, S. B., Sep 2017, In : Autism Research. 10, 9, p. 1470-1480 11 p.

Research output: Contribution to journalArticle

12 Scopus citations
2016

Embracing Complex Associations in Common Traits: Critical Considerations for Precision Medicine

Hall, M. A., Moore, J. H. & Ritchie, M. D., Aug 1 2016, In : Trends in Genetics. 32, 8, p. 470-484 15 p.

Research output: Contribution to journalReview article

15 Scopus citations

Epistatic Gene-Based Interaction Analyses for Glaucoma in eMERGE and NEIGHBOR Consortium

eMERGE Network & NEIGHBOR Consortium, Sep 2016, In : PLoS genetics. 12, 9, e1006186.

Research output: Contribution to journalArticle

15 Scopus citations

Identification of genetic interaction networks via an evolutionary algorithm evolved Bayesian network

Li, R., Dudek, S. M., Kim, D., Hall, M. A., Bradford, Y., Peissig, P. L., Brilliant, M. H., Linneman, J. G., McCarty, C. A., Bao, L. & Ritchie, M. D., May 10 2016, In : BioData Mining. 9, 1, 18.

Research output: Contribution to journalArticle

5 Scopus citations
2015

Biology-Driven Gene-Gene Interaction Analysis of Age-Related Cataract in the eMERGE Network

Hall, M. A., Verma, S. S., Wallace, J., Lucas, A., Berg, R. L., Connolly, J., Crawford, D. C., Crosslin, D. R., de Andrade, M., Doheny, K. F., Haines, J. L., Harley, J. B., Jarvik, G. P., Kitchner, T., Kuivaniemi, H., Larson, E. B., Carrell, D. S., Tromp, G., Vrabec, T. R., Pendergrass, S. A. & 2 others, Mccarty, C. A. & Ritchie, M. D., Jul 1 2015, In : Genetic Epidemiology. 39, 5, p. 376-384 9 p.

Research output: Contribution to journalArticle

12 Scopus citations

Identifying gene-gene interactions that are highly associated with Body Mass Index using Quantitative Multifactor Dimensionality Reduction (QMDR)

De, R., Verma, S. S., Drenos, F., Holzinger, E. R., Holmes, M. V., Hall, M. A., Crosslin, D. R., Carrell, D. S., Hakonarson, H., Jarvik, G., Larson, E., Pacheco, J. A., Rasmussen-Torvik, L. J., Moore, C. B., Asselbergs, F. W., Moore, J. H., Ritchie, M. D., Keating, B. J. & Gilbert-Diamond, D., Dec 14 2015, In : BioData Mining. 8, 1, 74.

Research output: Contribution to journalArticle

11 Scopus citations

Next-generation analysis of cataracts: determining knowledge driven gene-gene interactions using biofilter, and gene-environment interactions using the Phenx Toolkit*

Pendergrass, S. A., Verma, S. S., Hall, M. A., Holzinger, E. R., Moore, C. B., Wallace, J. R., Dudek, S. M., Huggins, W., Kitchner, T., Waudby, C., Berg, R., Mccarty, C. A. & Ritchie, M. D., Jan 1 2015, In : Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. p. 495-505 11 p.

Research output: Contribution to journalArticle

3 Scopus citations

Phenome-Wide Association Studies: Embracing Complexity for Discovery

Pendergrass, S. A., Verma, A., Okula, A., Hall, M. A., Crawford, D. C. & Ritchie, M. D., Jul 25 2015, In : Human heredity. 79, 3-4, p. 111-123 13 p.

Research output: Contribution to journalArticle

11 Scopus citations

Session introduction: Characterizing the importance of environmental exposures, interactions between the environment and genetic architecture, and genetic interactions: New methods for understanding the etiology of complex traits and disease

Hall, M. A., Verma, S. S., Wall, D. P., Moore, J. H., Keating, B., Campbell, D. B., Gibson, G., Asselbergs, F. W. & Pendergrass, S., Jan 1 2015, In : Pacific Symposium on Biocomputing. p. 156-160 5 p.

Research output: Contribution to journalConference article

2014

Detection of Pleiotropy through a Phenome-Wide Association Study (PheWAS) of Epidemiologic Data as Part of the Environmental Architecture for Genes Linked to Environment (EAGLE) Study

Hall, M. A., Verma, A., Brown-Gentry, K. D., Goodloe, R., Boston, J., Wilson, S., McClellan, B., Sutcliffe, C., Dilks, H. H., Gillani, N. B., Jin, H., Mayo, P., Allen, M., Schnetz-Boutaud, N., Crawford, D. C., Ritchie, M. D. & Pendergrass, S. A., Dec 1 2014, In : PLoS genetics. 10, 12

Research output: Contribution to journalArticle

36 Scopus citations

Electronic medical records and genomics (eMERGE) network exploration in cataract: Several new potential susceptibility loci

Ritchie, M. D., Verma, S. S., Hall, M. A., Goodloe, R. J., Berg, R. L., Carrell, D. S., Carlson, C. S., Chen, L., Crosslin, D. R., Denny, J. C., Jarvik, G., Li, R., Linneman, J. G., Pathak, J., Peissig, P., Rasmussen, L. V., Ramirez, A. H., Wang, X., Wilke, R. A., Wolf, W. A. & 3 others, Torstenson, E. S., Turner, S. D. & McCarty, C. A., Sep 19 2014, In : Molecular vision. 20, p. 1281-1295 15 p.

Research output: Contribution to journalArticle

17 Scopus citations

Environment-wide association study (EWAS) for type 2 diabetes in the Marshfield Personalized Medicine Research Project Biobank

Hall, M. A., Dudek, S. M., Goodloe, R., Crawford, D. C., Pendergrass, S. A., Peissig, P., Brilliant, M., McCarty, C. A. & Ritchie, M. D., Jan 1 2014, In : Pacific Symposium on Biocomputing. p. 200-211 12 p.

Research output: Contribution to journalConference article

25 Scopus citations
2013

Next-generation analysis of cataracts: Determining knowledge driven gene-gene interactions using biofilter, and gene-environment interactions using the PhenX Toolkit

Pendergrass, S. A., Verma, S. S., Hall, M. A., Holzinger, E. R., Moore, C. B., Wallace, J. R., Dudek, S. M., Huggins, W., Kitchner, T., Waudby, C., Berg, R., McCarty, C. A. & Ritchie, M. D., Jan 1 2013, In : Pacific Symposium on Biocomputing. p. 147-158 12 p.

Research output: Contribution to journalConference article

17 Scopus citations