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Research Output 1994 2019

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7 Citations (Scopus)

Computational evaluation of protein stability change upon mutations

Yin, S., Ding, F. & Dokholyan, N., Dec 1 2010, In Vitro Mutagenesis Protocols: Third Edition. Jeff, B. (ed.). p. 189-201 13 p. (Methods in Molecular Biology; vol. 634).

Research output: Chapter in Book/Report/Conference proceedingChapter

Protein Stability
Mutation
Mutant Proteins
Tertiary Protein Structure
Mutagenesis
5 Citations (Scopus)

Computational methods toward accurate RNA structure prediction using coarse-grained and all-atom models

Krokhotin, A. & Dokholyan, N., Jan 1 2015, Methods in Enzymology. Academic Press Inc., p. 65-89 25 p. (Methods in Enzymology; vol. 553).

Research output: Chapter in Book/Report/Conference proceedingChapter

Computational methods
RNA
Atoms
Nucleotides
Guide RNA
1 Citation (Scopus)

Computational modeling of small molecule ligand binding interactions and affinities

Convertino, M. & Dokholyan, N., May 1 2016, Methods in Molecular Biology. Humana Press Inc., p. 23-32 10 p. (Methods in Molecular Biology; vol. 1414).

Research output: Chapter in Book/Report/Conference proceedingChapter

Ligands
Biological Phenomena
Preclinical Drug Evaluations
Propranolol
Adrenergic Receptors
5 Citations (Scopus)

Computational protein design through grafting and stabilization

Zhu, C., Mowrey, D. D. & Dokholyan, N., Jan 1 2017, Methods in Molecular Biology. Humana Press Inc., p. 227-241 15 p. (Methods in Molecular Biology; vol. 1529).

Research output: Chapter in Book/Report/Conference proceedingChapter

Mutation
Proteins
Protein Stability
Software
Databases
2 Citations (Scopus)

Modeling Mutations in Proteins Using Medusa and Discrete Molecule Dynamics

Yin, S., Ding, F. & Dokholyan, N., Sep 7 2010, Introduction to Protein Structure Prediction: Methods and Algorithms. John Wiley and Sons, p. 453-476 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Mutation
Molecules
Proteins

RNA three-dimensional structure determination using experimental constraints

Ding, F. & Dokholyan, N., Jan 1 2013, RNA Nanotechnology and Therapeutics. CRC Press, p. 159-175 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

RNA
Riboswitch
Drug Design
Proteins
Bacterial RNA

Role of Ca2+-Mediated signaling in als pathology

Kotelnikova, E. A., Pyatnitskiy, M. A., Redler Rachel L., R. L. & Dokholyan, N., Dec 1 2012, From Knowledge Networks to Biological Models. Bentham Science Publishers Ltd., p. 24-72 49 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Pathology
Calcium
Transcription factors
Neurons
Transcription Factors
90 Citations (Scopus)

The complex molecular biology of Amyotrophic Lateral Sclerosis (ALS)

Redler, R. L. & Dokholyan, N., Jan 1 2012, Progress in Molecular Biology and Translational Science. Elsevier B.V., p. 215-262 48 p. (Progress in Molecular Biology and Translational Science; vol. 107).

Research output: Chapter in Book/Report/Conference proceedingChapter

Amyotrophic Lateral Sclerosis
Molecular Biology
Axonal Transport
Poisons
Nerve Growth Factors