If you made any changes in Pure, your changes will be visible here soon.

Research Output 1994 2019

Filter
Article
2019

A dissection model for mapping complex traits

Sang, M., Shi, H., Wei, K., Ye, M., Jiang, L., Sun, L. & Wu, R., Mar 1 2019, In : Plant Journal. 97, 6, p. 1168-1182 15 p.

Research output: Contribution to journalArticle

Dissection
quantitative trait loci
DNA Shuffling
Genetic Selection
Quantitative Trait Loci

An adaptive multivariate two-sample test with application to microbiome differential abundance analysis

Banerjee, K., Zhao, N., Srinivasan, A., Xue, L., Hicks, S., Middleton, F. A., Wu, R. & Zhan, X., Jan 1 2019, In : Frontiers in Genetics. 10, APR, 350.

Research output: Contribution to journalArticle

Open Access
Microbiota
Validation Studies
Software
Multivariate Analysis

An omnidirectional visualization model of personalized gene regulatory networks

Chen, C., Jiang, L., Fu, G., Wang, M., Wang, Y., Shen, B., Liu, Z., Wang, Z., Hou, W., Berceli, S. A. & Wu, R., Jan 1 2019, In : NPJ systems biology and applications. 5, 1 p.

Research output: Contribution to journalArticle

Open Access
Programming Languages
Gene Regulatory Networks
Gene Regulatory Network
Computer programming languages
Visualization

A unified DNA sequence and non-DNA sequence mapping model of complex traits

Zeng, Y., Zhu, X., Chen, C., Banerjee, K., Sun, L., Yu, W., Zheng, B. & Wu, R., Jan 1 2019, In : Plant Journal. 99, 4, p. 784-795 12 p.

Research output: Contribution to journalArticle

quantitative trait loci
Quantitative Trait Loci
nucleotide sequences
Taxaceae
Gymnosperms
1 Citation (Scopus)

Functional mapping of N deficiency-induced response in wheat yield-component traits by implementing high-throughput phenotyping

Jiang, L., Sun, L., Ye, M., Wang, J., Wang, Y., Bogard, M., Lacaze, X., Fournier, A., Beauchêne, K., Gouache, D. & Wu, R., Mar 1 2019, In : Plant Journal. 97, 6, p. 1105-1119 15 p.

Research output: Contribution to journalArticle

yield components
Triticum
phenotype
wheat
Quantitative Trait Loci

Mapping covariation quantitative trait loci that control organ growth and whole-plant biomass

Gan, J., Cao, Y., Jiang, L. & Wu, R., May 31 2019, In : Frontiers in Plant Science. 10, 719.

Research output: Contribution to journalArticle

Open Access
biomass production
quantitative trait loci
dry matter partitioning
plant organs
inbred lines

np2QTL: networking phenotypic plasticity quantitative trait loci across heterogeneous environments

Ye, M., Jiang, L., Chen, C., Zhu, X., Wang, M. & Wu, R., Jan 1 2019, In : Plant Journal. 99, 4, p. 796-806 11 p.

Research output: Contribution to journalArticle

Quantitative Trait Loci
phenotypic plasticity
quantitative trait loci
plant adaptation
Plastics

np2QTL: networking phenotypic plasticity quantitative trait loci across heterogeneous environments

Ye, M., Jiang, L., Chen, C., Zhu, X., Wang, M. & Wu, R., Apr 22 2019, In : the Plant Journal.

Research output: Contribution to journalArticle

Open Access

The genomic landscape of crossover interference in the desert tree populus euphratica

Wang, P., Jiang, L., Ye, M., Zhu, X. & Wu, R., Jan 1 2019, In : Frontiers in Genetics. 10, MAY, 440.

Research output: Contribution to journalArticle

Open Access
Populus
Chromosomes
Genome
2018
3 Citations (Scopus)

A computational-experimental framework for mapping plant coexistence

Jiang, L., Shi, C., Ye, M., Xi, F., Cao, Y., Wang, L., Zhang, M., Sang, M. & Wu, R., May 1 2018, In : Methods in Ecology and Evolution. 9, 5, p. 1335-1352 18 p.

Research output: Contribution to journalArticle

coexistence
plant communities
phenotype
quantitative trait loci
game theory
1 Citation (Scopus)

A mapping framework of competition–cooperation QTLs that drive community dynamics

Jiang, L., He, X., Jin, Y., Ye, M., Sang, M., Chen, N., Zhu, J., Zhang, Z., Li, J. & Wu, R., Dec 1 2018, In : Nature communications. 9, 1, 3010.

Research output: Contribution to journalArticle

Quantitative Trait Loci
loci
Genes
Ecology
ecology
2 Citations (Scopus)

An ecophysiologically based mapping model identifies a major pleiotropic QTL for leaf growth trajectories of Phaseolus vulgaris

Wei, K., Wang, J., Sang, M., Zhang, S., Zhou, H., Jiang, L., Clavijo Michelangeli, J. A., Vallejos, C. E. & Wu, R., Sep 1 2018, In : Plant Journal. 95, 5, p. 775-784 10 p.

Research output: Contribution to journalArticle

Phaseolus
Quantitative Trait Loci
Phaseolus vulgaris
trajectories
quantitative trait loci

An ultrahigh-dimensional mapping model of high-order epistatic networks for complex traits

Gosik, K., Sun, L., Chinchilli, V. & Wu, R., Jan 1 2018, In : Current Genomics. 19, 5, p. 384-394 11 p.

Research output: Contribution to journalArticle

Prunus
Statistical Models
Growth
Genotype
Phenotype

Comparative transcriptome analysis identifies differentially expressed genes between normal and late-blooming Siberian apricot

Wang, Z., Song, S., Sheng, S., Tian, J., Wu, R. & Pang, X., Jan 1 2018, (Accepted/In press) In : Journal of Forestry Research. 30, 6, p. 2277-2288 12 p.

Research output: Contribution to journalArticle

transcriptomics
gene
genes
flowering
circadian rhythm
8 Citations (Scopus)

How Long Non-Coding RNAs and MicroRNAs Mediate the Endogenous RNA Network of Head and Neck Squamous Cell Carcinoma: A Comprehensive Analysis

Zhao, G., Fu, Y., Su, Z. & Wu, R., Oct 1 2018, In : Cellular Physiology and Biochemistry. 50, 1, p. 342-352 11 p.

Research output: Contribution to journalArticle

Long Noncoding RNA
MicroRNAs
RNA
Messenger RNA
Kaplan-Meier Estimate
2 Citations (Scopus)

How trees allocate carbon for optimal growth: insight from a game-theoretic model

Fu, L., Sun, L., Hao, H., Jiang, L., Zhu, S., Ye, M., Tang, S., Huang, M. & Wu, R., Jul 20 2018, In : Briefings in bioinformatics. 19, 4, p. 593-602 10 p.

Research output: Contribution to journalArticle

Game Theory
Theoretical Models
Carbon
Game theory
Growth

HpQTL: a geometric morphometric platform to compute the genetic architecture of heterophylly

Sun, L., Wang, J., Zhu, X., Jiang, L., Gosik, K., Sang, M., Sun, F., Cheng, T., Zhang, Q. & Wu, R., Jul 20 2018, In : Briefings in bioinformatics. 19, 4, p. 603-612 10 p.

Research output: Contribution to journalArticle

Genes
Plant Development
Quantitative Trait Loci
Genome-Wide Association Study
Prunus

Hyperacute Monocyte Gene Response Patterns Are Associated With Lower Extremity Vein Bypass Graft Failure

Rehfuss, J. P., DeSart, K. M., Rozowsky, J. M., O'Malley, K. A., Moldawer, L. L., Baker, H. V., Wang, Y., Wu, R., Nelson, P. R. & Berceli, S. A., Mar 1 2018, In : Circulation. Genomic and precision medicine. 11, 3, p. e001970

Research output: Contribution to journalArticle

Monocytes
Lower Extremity
Veins
Transplants
Bayes Theorem

Mapping morphological shape as a high-dimensional functional curve

Fu, G., Huang, M., Bo, W., Hao, H. & Wu, R., May 1 2018, In : Briefings in bioinformatics. 19, 3, p. 461-471 11 p.

Research output: Contribution to journalArticle

Populus
Quantitative Trait Loci
Sea level
Research
Oceans and Seas
31 Citations (Scopus)

Methodological implementation of mixed linear models in multi-locus genome-wide association studies

Wen, Y. J., Zhang, H., Ni, Y. L., Huang, B., Zhang, J., Feng, J. Y., Wang, S. B., Dunwell, J. M., Zhang, Y. M. & Wu, R., Jul 20 2018, In : Briefings in bioinformatics. 19, 4, p. 700-712 13 p.

Research output: Contribution to journalArticle

Genome-Wide Association Study
Linear Models
Genes
Single Nucleotide Polymorphism
Nucleotides
3 Citations (Scopus)

Molecular dynamic modeling of CYP51B in complex with azole inhibitors

Gao, P., Cui, Y. L. & Wu, R., Apr 26 2018, In : Journal of Biomolecular Structure and Dynamics. 36, 6, p. 1511-1519 9 p.

Research output: Contribution to journalArticle

diniconazole
Azoles
Fluconazole
Molecular Dynamics Simulation
Sterol 14-Demethylase
4 Citations (Scopus)

The genetic architecture of floral traits in the woody plant Prunus mume

Zhang, Q., Zhang, H., Sun, L., Fan, G., Ye, M., Jiang, L., Liu, X., Ma, K., Shi, C., Bao, F., Guan, R., Han, Y., Fu, Y., Pan, H., Chen, Z., Li, L., Wang, J., Lv, M., Zheng, T., Yuan, C. & 7 others, Zhou, Y., Lee, S. M. Y., Yan, X., Xu, X., Wu, R., Chen, W. & Cheng, T., Dec 1 2018, In : Nature communications. 9, 1, 1702.

Research output: Contribution to journalArticle

Prunus
Color
color
genome
Genes

Transcriptome profiling of PeCRY1 transgenic Populus tomentosa

Wang, L., Wu, R. & Bo, W., Apr 1 2018, In : Genes and Genomics. 40, 4, p. 349-359 11 p.

Research output: Contribution to journalArticle

Populus
Cryptochromes
Gene Expression Profiling
Genes
Growth and Development
5 Citations (Scopus)

Two-stage identification of SNP effects on dynamic poplar growth

Liu, J., Ye, M., Zhu, S., Jiang, L., Sang, M., Gan, J., Wang, Q., Huang, M. & Wu, R., Jan 2018, In : Plant Journal. 93, 2, p. 286-296 11 p.

Research output: Contribution to journalArticle

single nucleotide polymorphism
Single Nucleotide Polymorphism
phenotype
Growth
additive effect

胡杨幼苗生长相关性状QTL上位性分析

Translated title of the contribution: QTL epistasis effect analysis of seedling growth-related traits in Populus euphraticaWang, P., Wang, D., Wang, J., Jiang, L. & Wu, R., Dec 1 2018, In : Beijing Linye Daxue Xuebao/Journal of Beijing Forestry University. 40, 12, p. 49-59 11 p.

Research output: Contribution to journalArticle

Populus euphratica
epistasis
seedling growth
quantitative trait loci
seedling
2017

A computing platform to map ecological metabolism by integrating functional mapping and the metabolic theory of ecology

Yan, Q., Zhu, X., Jiang, L., Ye, M., Sun, L., Terblanche, J. S. & Wu, R., Jan 1 2017, In : Briefings in Bioinformatics. 18, 1, p. 137-144 8 p.

Research output: Contribution to journalArticle

Ecology
Metabolism
Temperature
Genes
Quantitative Trait Loci
2 Citations (Scopus)

A high-dimensional linkage analysis model for characterizing crossover interference

Wang, J., Sun, L., Jiang, L., Sang, M., Ye, M., Cheng, T., Zhang, Q. & Wu, R., May 1 2017, In : Briefings in bioinformatics. 18, 3, p. 382-393 12 p.

Research output: Contribution to journalArticle

Genes
Genome
Statistical Models
Chromosomes
1 Citation (Scopus)

AlloMap6: An R package for genetic linkage analysis in allohexaploids

Zhu, X., Li, H., Ye, M., Jiang, L., Sang, M. & Wu, R., Nov 1 2017, In : Briefings in bioinformatics. 18, 6, p. 919-927 9 p.

Research output: Contribution to journalArticle

Genetic Linkage
Chromosomes
Diospyros
Polyploidy
Ploidies

A nonparametric approach for functional mapping of complex traits

Hao, H., Sun, L., Zhu, X. & Wu, R., Jan 1 2017, In : Statistics and its Interface. 10, 3, p. 387-397 11 p.

Research output: Contribution to journalArticle

Quantitative Trait Loci
High-dimensional
Analysis of variance (ANOVA)
Statistical Power
Fourier Transformation
1 Citation (Scopus)

Association of the haem oxygenase-1 gene with inflammatory bowel disease

Lin, Z., Hao, H., Hegarty, J. P., Lin, T. R., Wang, Y., Harris, L. R., Xu, H. N., Wu, R., Thomas, N. J. & Floros, J., Aug 2 2017, In : Swiss Medical Weekly. 147, w14456.

Research output: Contribution to journalArticle

Heme Oxygenase (Decyclizing)
Inflammatory Bowel Diseases
Interleukin-10
Down-Regulation
Genes

Bacterial genetic architecture of ecological interactions in co-culture by GWAS-taking Escherichia coli and Staphylococcus aureus as an example

He, X., Jin, Y., Ye, M., Chen, N., Zhu, J., Wang, J., Jiang, L. & Wu, R., Nov 27 2017, In : Frontiers in Microbiology. 8, NOV, 2332.

Research output: Contribution to journalArticle

Genome-Wide Association Study
Coculture Techniques
Single Nucleotide Polymorphism
Staphylococcus aureus
Escherichia coli
3 Citations (Scopus)

Evo-Devo-EpiR: a genome-wide search platform for epistatic control on the evolution of development

Jiang, L., Zhang, M., Sang, M., Ye, M. & Wu, R., Sep 1 2017, In : Briefings in bioinformatics. 18, 5, p. 754-760 7 p.

Research output: Contribution to journalArticle

Genes
Genome
Phenotype
Quantitative Trait Loci
Genome-Wide Association Study
2 Citations (Scopus)

Functional Mapping of Multiple Dynamic Traits

Cao, J., Wang, L., Huang, Z., Gai, J. & Wu, R., Mar 1 2017, In : Journal of Agricultural, Biological, and Environmental Statistics. 22, 1, p. 60-75 16 p.

Research output: Contribution to journalArticle

Quantitative Trait Loci
Biological Phenomena
Internal-External Control
Soybeans
Soybean
9 Citations (Scopus)

Genetic association and epistatic interaction of the interleukin-10 signaling pathway in pediatric inflammatory bowel disease

Lin, Z., Wang, Z., Hegarty, J. P., Lin, T. R., Wang, Y., Deiling, S., Wu, R., Thomas, N. & Floros, J., Jul 21 2017, In : World Journal of Gastroenterology. 23, 27, p. 4897-4909 13 p.

Research output: Contribution to journalArticle

Inflammatory Bowel Diseases
Interleukin-10
Pediatrics
Single Nucleotide Polymorphism
Genes
3 Citations (Scopus)
Quantitative Trait Loci
Gene expression
Genes
Gene Expression
Caenorhabditis elegans
2 Citations (Scopus)
Molecular Dynamics Simulation
Membranes
Pharmaceutical Preparations
Drug-Related Side Effects and Adverse Reactions
Point Mutation
4 Citations (Scopus)

Novel mutation sites in the development of vancomycin- intermediate resistance in staphylococcus aureus

Wang, Y., Li, X., Jiang, L., Han, W., Xie, X., Jin, Y., He, X. & Wu, R., Jan 10 2017, In : Frontiers in Microbiology. 7, JAN, 2163.

Research output: Contribution to journalArticle

Vancomycin Resistance
Vancomycin
Staphylococcus aureus
Mutation
Methicillin
1 Citation (Scopus)

Phylogeography study of the siberian apricot (Prunus sibirica L.) in Northern China assessed by chloroplast microsatellite and DNA makers

Wang, Z., Zeng, Y., Zhang, Z., Sheng, S., Tian, J., Wu, R. & Pang, X., Nov 21 2017, In : Frontiers in Plant Science. 8, 1989.

Research output: Contribution to journalArticle

phylogeography
chloroplasts
microsatellite repeats
China
DNA
2 Citations (Scopus)

The genetic architecture of growth traits in Salix matsudana under salt stress

Zhang, J., Yuan, H., Yang, Q., Li, M., Wang, Y., Li, Y., Ma, X., Tan, F. & Wu, R., Jun 14 2017, In : Horticulture Research. 4, 17024.

Research output: Contribution to journalArticle

Salix matsudana
Salix
growth traits
salt stress
Salts
1 Citation (Scopus)

The genetic architecture of heterochrony as a quantitative trait: Lessons from a computational model

Sun, L., Sang, M., Zheng, C., Wang, D., Shi, H., Liu, K., Guo, Y., Cheng, T., Zhang, Q. & Wu, R., May 30 2017, In : Briefings in bioinformatics. 19, 6, p. 1430-1439 10 p.

Research output: Contribution to journalArticle

Genes
Quantitative Trait Loci
Genetic Models
Ecology
Experiments
5 Citations (Scopus)

The genetic architecture of shoot–root covariation during seedling emergence of a desert tree, Populus euphratica

Zhang, M., Bo, W., Xu, F., Li, H., Ye, M., Jiang, L., Shi, C., Fu, Y., Zhao, G., Huang, Y., Gosik, K., Liang, D. & Wu, R., Jun 1 2017, In : Plant Journal. 90, 5, p. 918-928 11 p.

Research output: Contribution to journalArticle

Populus euphratica
Populus
seedling emergence
Seedlings
deserts
2016
1 Citation (Scopus)

A block mixture model to map eQTLs for gene clustering and networking

Wang, N., Gosik, K., Li, R., Lindsay, B. & Wu, R., Feb 19 2016, In : Scientific reports. 6, 21193.

Research output: Contribution to journalArticle

Quantitative Trait Loci
Cluster Analysis
Gene Regulatory Networks
Multigene Family
Physiological Phenomena
5 Citations (Scopus)

A computational framework for mapping the timing of vegetative phase change

Xu, M., Jiang, L., Zhu, S., Zhou, C., Ye, M., Mao, K., Sun, L., Su, X., Pan, H., Zhang, S., Huang, M. & Wu, R., Jul 1 2016, In : The New phytologist. 211, 2, p. 750-760 11 p.

Research output: Contribution to journalArticle

Quantitative Trait Loci
phase transition
quantitative trait loci
Phase Transition
Genetic Phenomena
12 Citations (Scopus)

A high-density genetic map of tetraploid salix matsudana using specific length amplified fragment sequencing (SLAF-seq)

Zhang, J., Yuan, H., Li, M., Li, Y., Wang, Y., Ma, X., Zhang, Y., Tan, F. & Wu, R., Jun 1 2016, In : PLoS One. 11, 6, e0157777.

Research output: Contribution to journalArticle

Salix matsudana
Salix
Tetraploidy
tetraploidy
Salts
2 Citations (Scopus)

Computational identification of genes modulating stem height–diameter allometry

Jiang, L., Ye, M., Zhu, S., Zhai, Y., Xu, M., Huang, M. & Wu, R., Dec 1 2016, In : Plant Biotechnology Journal. 14, 12, p. 2254-2264 11 p.

Research output: Contribution to journalArticle

allometry
quantitative trait loci
stems
Quantitative Trait Loci
Growth
2 Citations (Scopus)
Regioselectivity
Diclofenac
Molecular dynamics
enzymes
Protein Isoforms
2015
9 Citations (Scopus)

2HiGWAS: A unifying high-dimensional platform to infer the global genetic architecture of trait development

Jiang, L., Liu, J., Zhu, X., Ye, M., Sun, L., Lacaze, X. & Wu, R., Feb 6 2015, In : Briefings in bioinformatics. 16, 6, p. 905-911 7 p., bbv002.

Research output: Contribution to journalArticle

Single Nucleotide Polymorphism
Genome-Wide Association Study
Genes
Developmental Genes
Essential Genes
3 Citations (Scopus)

A multi-Poisson dynamic mixture model to cluster developmental patterns of gene expression by RNA-seq

Ye, M., Wang, Z., Wang, Y. & Wu, R., Mar 1 2015, In : Briefings in bioinformatics. 16, 2, p. 205-215 11 p., bbu013.

Research output: Contribution to journalArticle

Developmental Genes
RNA
Gene expression
Multigene Family
Gene Expression
3 Citations (Scopus)

A reciprocal cross design to map the genetic architecture of complex traits in apomictic plants

Yin, D., Zhu, X., Jiang, L., Zhang, J., Zeng, Y. & Wu, R., Feb 1 2015, In : New Phytologist. 205, 3, p. 1360-1367 8 p.

Research output: Contribution to journalArticle

reciprocal crosses
Quantitative Trait Loci
Apomixis
quantitative trait loci
apomixis
19 Citations (Scopus)

Bayesian group lasso for nonparametric varying-coefficient models with application to functional genome-wide association studies

Li, J., Wang, Z., Li, R. & Wu, R., Jun 1 2015, In : Annals of Applied Statistics. 9, 2, p. 640-664 25 p.

Research output: Contribution to journalArticle

Varying Coefficient Model
Lasso
Nonparametric Model
Genome
Genes