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2020

Analysis of quasi-dynamic ordinary differential equations and the quasi-dynamic replicator

Griffin, C., Jiang, L. & Wu, R., Jan 1 2020, (Accepted/In press) In : Physica A: Statistical Mechanics and its Applications. 124422.

Research output: Contribution to journalArticle

Genome-wide analysis of the NAC domain transcription factor gene family in Theobroma cacao

Shen, S., Zhang, Q., Shi, Y., Sun, Z., Zhang, Q., Hou, S., Wu, R., Jiang, L., Zhao, X. & Guo, Y., Jan 2020, In : Genes. 11, 1, 35.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

The genetic control of leaf allometry in the common bean, Phaseolus vulgaris

Zhang, M., Zhang, S., Ye, M., Jiang, L., Vallejos, C. E. & Wu, R., Mar 14 2020, In : BMC Genetics. 21, 1, 29.

Research output: Contribution to journalArticle

Open Access
2019

A Computational Model for Inferring QTL Control Networks Underlying Developmental Covariation

Jiang, L., Shi, H., Sang, M., Zheng, C., Cao, Y., Zhu, X., Zhuo, X., Cheng, T., Zhang, Q., Wu, R. & Sun, L., Dec 18 2019, In : Frontiers in Plant Science. 10, 1557.

Research output: Contribution to journalArticle

Open Access

A dissection model for mapping complex traits

Sang, M., Shi, H., Wei, K., Ye, M., Jiang, L., Sun, L. & Wu, R., Mar 2019, In : Plant Journal. 97, 6, p. 1168-1182 15 p.

Research output: Contribution to journalArticle

A Drive to Driven Model of Mapping Intraspecific Interaction Networks

Jiang, L., Xu, J., Sang, M., Zhang, Y., Ye, M., Zhang, H., Wu, B., Zhu, Y., Xu, P., Tai, R., Zhao, Z., Jiang, Y., Dong, C., Sun, L., Griffin, C. H., Gragnoli, C. & Wu, R., Dec 20 2019, In : iScience. 22, p. 109-122 14 p.

Research output: Contribution to journalArticle

Open Access

An adaptive multivariate two-sample test with application to microbiome differential abundance analysis

Banerjee, K., Zhao, N., Srinivasan, A., Xue, L., Hicks, S. D., Middleton, F. A., Wu, R. & Zhan, X., Jan 1 2019, In : Frontiers in Genetics. 10, APR, 350.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

An omnidirectional visualization model of personalized gene regulatory networks

Chen, C., Jiang, L., Fu, G., Wang, M., Wang, Y., Shen, B., Liu, Z., Wang, Z., Hou, W., Berceli, S. A. & Wu, R., Jan 1 2019, In : NPJ systems biology and applications. 5, 1 p.

Research output: Contribution to journalArticle

Open Access

A unified DNA sequence and non-DNA sequence mapping model of complex traits

Zeng, Y., Zhu, X., Chen, C., Banerjee, K., Sun, L., Yu, W., Zheng, B. & Wu, R., Jan 1 2019, In : Plant Journal. 99, 4, p. 784-795 12 p.

Research output: Contribution to journalArticle

Comparative transcriptome analysis identifies differentially expressed genes between normal and late-blooming Siberian apricot

Wang, Z., Song, S., Sheng, S., Tian, J., Wu, R. & Pang, X., Dec 1 2019, In : Journal of Forestry Research. 30, 6, p. 2277-2288 12 p.

Research output: Contribution to journalArticle

1 Scopus citations

Functional mapping of N deficiency-induced response in wheat yield-component traits by implementing high-throughput phenotyping

Jiang, L., Sun, L., Ye, M., Wang, J., Wang, Y., Bogard, M., Lacaze, X., Fournier, A., Beauchêne, K., Gouache, D. & Wu, R., Mar 2019, In : Plant Journal. 97, 6, p. 1105-1119 15 p.

Research output: Contribution to journalArticle

2 Scopus citations

Funmap2: An R package for QTL mapping using longitudinal phenotypes

Wang, N., Chu, T., Luo, J., Wu, R. & Wang, Z., Jan 1 2019, In : PeerJ. 2019, 5, e7008.

Research output: Contribution to journalArticle

Open Access

Identification of shoot differentiation-related genes in populus euphratica oliv.

Fu, Y., Dong, T., Tan, L., Yin, D., Zhang, M., Zhao, G., Ye, M. & Wu, R., Dec 2019, In : Genes. 10, 12, 1034.

Research output: Contribution to journalArticle

Open Access

Interrogation of internal workings in microbial community assembly: Play a game through a behavioral network?

Wang, Q., Liu, X., Jiang, L., Cao, Y., Zhan, X., Griffin, C. H. & Wu, R., Jan 1 2019, In : mSystems. 4, 5, e00550.

Research output: Contribution to journalArticle

Open Access

Mapping covariation quantitative trait loci that control organ growth and whole-plant biomass

Gan, J., Cao, Y., Jiang, L. & Wu, R., May 31 2019, In : Frontiers in Plant Science. 10, 719.

Research output: Contribution to journalArticle

Open Access

np2QTL: networking phenotypic plasticity quantitative trait loci across heterogeneous environments

Ye, M., Jiang, L., Chen, C., Zhu, X., Wang, M. & Wu, R., Jan 1 2019, In : Plant Journal. 99, 4, p. 796-806 11 p.

Research output: Contribution to journalArticle

1 Scopus citations

np2QTL: networking phenotypic plasticity quantitative trait loci across heterogeneous environments

Ye, M., Jiang, L., Chen, C., Zhu, X., Wang, M. & Wu, R., Apr 22 2019, In : the Plant Journal.

Research output: Contribution to journalArticle

Open Access

The genomic landscape of crossover interference in the desert tree populus euphratica

Wang, P., Jiang, L., Ye, M., Zhu, X. & Wu, R., Jan 1 2019, In : Frontiers in Genetics. 10, MAY, 440.

Research output: Contribution to journalArticle

Open Access
2018

A computational-experimental framework for mapping plant coexistence

Jiang, L., Shi, C., Ye, M., Xi, F., Cao, Y., Wang, L., Zhang, M., Sang, M. & Wu, R., May 2018, In : Methods in Ecology and Evolution. 9, 5, p. 1335-1352 18 p.

Research output: Contribution to journalArticle

3 Scopus citations

A mapping framework of competition–cooperation QTLs that drive community dynamics

Jiang, L., He, X., Jin, Y., Ye, M., Sang, M., Chen, N., Zhu, J., Zhang, Z., Li, J. & Wu, R., Dec 1 2018, In : Nature communications. 9, 1, 3010.

Research output: Contribution to journalArticle

3 Scopus citations

An ecophysiologically based mapping model identifies a major pleiotropic QTL for leaf growth trajectories of Phaseolus vulgaris

Wei, K., Wang, J., Sang, M., Zhang, S., Zhou, H., Jiang, L., Clavijo Michelangeli, J. A., Vallejos, C. E. & Wu, R., Sep 2018, In : Plant Journal. 95, 5, p. 775-784 10 p.

Research output: Contribution to journalArticle

3 Scopus citations

An ultrahigh-dimensional mapping model of high-order epistatic networks for complex traits

Gosik, K., Sun, L., Chinchilli, V. M. & Wu, R., Jan 1 2018, In : Current Genomics. 19, 5, p. 384-394 11 p.

Research output: Contribution to journalArticle

How Long Non-Coding RNAs and MicroRNAs Mediate the Endogenous RNA Network of Head and Neck Squamous Cell Carcinoma: A Comprehensive Analysis

Zhao, G., Fu, Y., Su, Z. & Wu, R., Oct 1 2018, In : Cellular Physiology and Biochemistry. 50, 1, p. 342-352 11 p.

Research output: Contribution to journalArticle

13 Scopus citations

How trees allocate carbon for optimal growth: insight from a game-theoretic model

Fu, L., Sun, L., Hao, H., Jiang, L., Zhu, S., Ye, M., Tang, S., Huang, M. & Wu, R., Jul 20 2018, In : Briefings in bioinformatics. 19, 4, p. 593-602 10 p.

Research output: Contribution to journalArticle

3 Scopus citations

HpQTL: a geometric morphometric platform to compute the genetic architecture of heterophylly

Sun, L., Wang, J., Zhu, X., Jiang, L., Gosik, K., Sang, M., Sun, F., Cheng, T., Zhang, Q. & Wu, R., Jul 20 2018, In : Briefings in bioinformatics. 19, 4, p. 603-612 10 p.

Research output: Contribution to journalArticle

Hyperacute Monocyte Gene Response Patterns Are Associated With Lower Extremity Vein Bypass Graft Failure

Rehfuss, J. P., DeSart, K. M., Rozowsky, J. M., O'Malley, K. A., Moldawer, L. L., Baker, H. V., Wang, Y., Wu, R., Nelson, P. R. & Berceli, S. A., Mar 1 2018, In : Circulation. Genomic and precision medicine. 11, 3, p. e001970

Research output: Contribution to journalArticle

Mapping morphological shape as a high-dimensional functional curve

Fu, G., Huang, M., Bo, W., Hao, H. & Wu, R., May 1 2018, In : Briefings in bioinformatics. 19, 3, p. 461-471 11 p.

Research output: Contribution to journalArticle

Methodological implementation of mixed linear models in multi-locus genome-wide association studies

Wen, Y. J., Zhang, H., Ni, Y. L., Huang, B., Zhang, J., Feng, J. Y., Wang, S. B., Dunwell, J. M., Zhang, Y. M. & Wu, R., Jul 20 2018, In : Briefings in bioinformatics. 19, 4, p. 700-712 13 p.

Research output: Contribution to journalArticle

44 Scopus citations

Molecular dynamic modeling of CYP51B in complex with azole inhibitors

Gao, P., Cui, Y. L. & Wu, R. L., Apr 26 2018, In : Journal of Biomolecular Structure and Dynamics. 36, 6, p. 1511-1519 9 p.

Research output: Contribution to journalArticle

3 Scopus citations

The genetic architecture of floral traits in the woody plant Prunus mume

Zhang, Q., Zhang, H., Sun, L., Fan, G., Ye, M., Jiang, L., Liu, X., Ma, K., Shi, C., Bao, F., Guan, R., Han, Y., Fu, Y., Pan, H., Chen, Z., Li, L., Wang, J., Lv, M., Zheng, T., Yuan, C. & 7 others, Zhou, Y., Lee, S. M. Y., Yan, X., Xu, X., Wu, R., Chen, W. & Cheng, T., Dec 1 2018, In : Nature communications. 9, 1, 1702.

Research output: Contribution to journalArticle

13 Scopus citations

Transcriptome profiling of PeCRY1 transgenic Populus tomentosa

Wang, L., Wu, R. & Bo, W., Apr 1 2018, In : Genes and Genomics. 40, 4, p. 349-359 11 p.

Research output: Contribution to journalArticle

Two-stage identification of SNP effects on dynamic poplar growth

Liu, J., Ye, M., Zhu, S., Jiang, L., Sang, M., Gan, J., Wang, Q., Huang, M. & Wu, R., Jan 2018, In : Plant Journal. 93, 2, p. 286-296 11 p.

Research output: Contribution to journalArticle

6 Scopus citations

胡杨幼苗生长相关性状QTL上位性分析

Translated title of the contribution: QTL epistasis effect analysis of seedling growth-related traits in Populus euphraticaWang, P., Wang, D., Wang, J., Jiang, L. & Wu, R., Dec 1 2018, In : Beijing Linye Daxue Xuebao/Journal of Beijing Forestry University. 40, 12, p. 49-59 11 p.

Research output: Contribution to journalArticle

2017

A computing platform to map ecological metabolism by integrating functional mapping and the metabolic theory of ecology

Yan, Q., Zhu, X., Jiang, L., Ye, M., Sun, L., Terblanche, J. S. & Wu, R., Jan 1 2017, In : Briefings in bioinformatics. 18, 1, p. 137-144 8 p.

Research output: Contribution to journalArticle

A high-dimensional linkage analysis model for characterizing crossover interference

Wang, J., Sun, L., Jiang, L., Sang, M., Ye, M., Cheng, T., Zhang, Q. & Wu, R., May 1 2017, In : Briefings in bioinformatics. 18, 3, p. 382-393 12 p.

Research output: Contribution to journalArticle

2 Scopus citations

AlloMap6: An R package for genetic linkage analysis in allohexaploids

Zhu, X., Li, H., Ye, M., Jiang, L., Sang, M. & Wu, R., Nov 1 2017, In : Briefings in bioinformatics. 18, 6, p. 919-927 9 p.

Research output: Contribution to journalArticle

1 Scopus citations

A nonparametric approach for functional mapping of complex traits

Hao, H., Sun, L., Zhu, X. & Wu, R., Jan 1 2017, In : Statistics and its Interface. 10, 3, p. 387-397 11 p.

Research output: Contribution to journalArticle

Association of the haem oxygenase-1 gene with inflammatory bowel disease

Lin, Z., Hao, H., Hegarty, J. P., Lin, T. R., Wang, Y., Harris, L. R., Xu, H. N., Wu, R., Thomas, N. J. & Floros, J., Aug 2 2017, In : Swiss Medical Weekly. 147, w14456.

Research output: Contribution to journalArticle

1 Scopus citations

Bacterial genetic architecture of ecological interactions in co-culture by GWAS-taking Escherichia coli and Staphylococcus aureus as an example

He, X., Jin, Y., Ye, M., Chen, N., Zhu, J., Wang, J., Jiang, L. & Wu, R., Nov 27 2017, In : Frontiers in Microbiology. 8, NOV, 2332.

Research output: Contribution to journalArticle

1 Scopus citations

Evo-Devo-EpiR: a genome-wide search platform for epistatic control on the evolution of development

Jiang, L., Zhang, M., Sang, M., Ye, M. & Wu, R., Sep 1 2017, In : Briefings in bioinformatics. 18, 5, p. 754-760 7 p.

Research output: Contribution to journalArticle

4 Scopus citations

Functional Mapping of Multiple Dynamic Traits

Cao, J., Wang, L., Huang, Z., Gai, J. & Wu, R., Mar 1 2017, In : Journal of Agricultural, Biological, and Environmental Statistics. 22, 1, p. 60-75 16 p.

Research output: Contribution to journalArticle

2 Scopus citations

Genetic association and epistatic interaction of the interleukin-10 signaling pathway in pediatric inflammatory bowel disease

Lin, Z., Wang, Z., Hegarty, J. P., Lin, T. R., Wang, Y., Deiling, S., Wu, R., Thomas, N. J. & Floros, J., Jul 21 2017, In : World journal of gastroenterology. 23, 27, p. 4897-4909 13 p.

Research output: Contribution to journalArticle

11 Scopus citations
4 Scopus citations
2 Scopus citations

Novel mutation sites in the development of vancomycin- intermediate resistance in staphylococcus aureus

Wang, Y., Li, X., Jiang, L., Han, W., Xie, X., Jin, Y., He, X. & Wu, R., Jan 10 2017, In : Frontiers in Microbiology. 7, JAN, 2163.

Research output: Contribution to journalArticle

6 Scopus citations

Phylogeography study of the siberian apricot (Prunus sibirica L.) in Northern China assessed by chloroplast microsatellite and DNA makers

Wang, Z., Zeng, Y., Zhang, Z., Sheng, S., Tian, J., Wu, R. & Pang, X., Nov 21 2017, In : Frontiers in Plant Science. 8, 1989.

Research output: Contribution to journalArticle

4 Scopus citations

The genetic architecture of growth traits in Salix matsudana under salt stress

Zhang, J., Yuan, H., Yang, Q., Li, M., Wang, Y., Li, Y., Ma, X., Tan, F. & Wu, R., Jun 14 2017, In : Horticulture Research. 4, 17024.

Research output: Contribution to journalArticle

4 Scopus citations

The genetic architecture of heterochrony as a quantitative trait: Lessons from a computational model

Sun, L., Sang, M., Zheng, C., Wang, D., Shi, H., Liu, K., Guo, Y., Cheng, T., Zhang, Q. & Wu, R., May 30 2017, In : Briefings in bioinformatics. 19, 6, p. 1430-1439 10 p.

Research output: Contribution to journalArticle

1 Scopus citations

The genetic architecture of shoot–root covariation during seedling emergence of a desert tree, Populus euphratica

Zhang, M., Bo, W., Xu, F., Li, H., Ye, M., Jiang, L., Shi, C., Fu, Y., Zhao, G., Huang, Y., Gosik, K., Liang, D. & Wu, R., Jun 2017, In : Plant Journal. 90, 5, p. 918-928 11 p.

Research output: Contribution to journalArticle

8 Scopus citations
2016

A block mixture model to map eQTLs for gene clustering and networking

Wang, N., Gosik, K., Li, R., Lindsay, B. & Wu, R., Feb 19 2016, In : Scientific reports. 6, 21193.

Research output: Contribution to journalArticle

1 Scopus citations