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Research Output

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Review article
2020

A rewiring model of intratumoral interaction networks

Sang, M., Rice, S., Jiang, L., Liu, X., Gragnoli, C., Belani, C. P. & Wu, R., 2020, In : Computational and Structural Biotechnology Journal. 18, p. 45-51 7 p.

Research output: Contribution to journalReview article

Open Access
2019

A regulatory network for mir156-spl module in arabidopsis thaliana

Zheng, C., Ye, M., Sang, M. & Wu, R., Dec 2 2019, In : International journal of molecular sciences. 20, 24, 6166.

Research output: Contribution to journalReview article

Open Access
2 Scopus citations

A unified mapping framework of multifaceted pharmacodynamic responses to hypertension interventions

Wang, Q., Gan, J., Wei, K., Berceli, S. A., Gragnoli, C. & Wu, R., Mar 2019, In : Drug Discovery Today. 24, 3, p. 883-889 7 p.

Research output: Contribution to journalReview article

Co-shared genetics and possible risk gene pathway partially explain the comorbidity of schizophrenia, major depressive disorder, type 2 diabetes, and metabolic syndrome

Postolache, T. T., del Bosque-Plata, L., Jabbour, S., Vergare, M., Wu, R. & Gragnoli, C., Apr 2019, In : American Journal of Medical Genetics, Part B: Neuropsychiatric Genetics. 180, 3, p. 186-203 18 p.

Research output: Contribution to journalReview article

9 Scopus citations
2018

Mapping genes for drug chronotherapy

Wei, K., Wang, Q., Gan, J., Zhang, S., Ye, M., Gragnoli, C. & Wu, R., Nov 2018, In : Drug Discovery Today. 23, 11, p. 1883-1888 6 p.

Research output: Contribution to journalReview article

4 Scopus citations
2017

Epigenetic game theory: How to compute the epigenetic control of maternal-to-zygotic transition

Wang, Q., Gosik, K., Xing, S., Jiang, L., Sun, L., Chinchilli, V. & Wu, R., Mar 1 2017, In : Physics of Life Reviews. 20, p. 126-137 12 p.

Research output: Contribution to journalReview article

13 Scopus citations

Landscaping Crossover Interference Across a Genome

Sun, L., Wang, J., Sang, M., Jiang, L., Zhao, B., Cheng, T., Zhang, Q. & Wu, R., Oct 2017, In : Trends in Plant Science. 22, 10, p. 894-907 14 p.

Research output: Contribution to journalReview article

2 Scopus citations

Plant grafting: how genetic exchange promotes vascular reconnection

Wang, J., Jiang, L. & Wu, R., Apr 1 2017, In : New Phytologist. 214, 1, p. 56-65 10 p.

Research output: Contribution to journalReview article

29 Scopus citations
2016

Integrating Evolutionary Game Theory into Mechanistic Genotype-Phenotype Mapping

Zhu, X., Jiang, L., Ye, M., Sun, L., Gragnoli, C. & Wu, R., May 1 2016, In : Trends in Genetics. 32, 5, p. 256-268 13 p.

Research output: Contribution to journalReview article

12 Scopus citations
2015

An overview of the prediction of protein DNA-binding sites

Si, J., Zhao, R. & Wu, R., Mar 6 2015, In : International journal of molecular sciences. 16, 3, p. 5194-5215 22 p.

Research output: Contribution to journalReview article

34 Scopus citations

Computational prediction of RNA-binding proteins and binding sites

Si, J., Cui, J., Cheng, J. & Wu, R., Nov 3 2015, In : International journal of molecular sciences. 16, 11, p. 26303-26317 15 p.

Research output: Contribution to journalReview article

33 Scopus citations

Mapping complex traits as a dynamic system

Sun, L. & Wu, R., Jun 1 2015, In : Physics of Life Reviews. 13, p. 155-185 31 p.

Research output: Contribution to journalReview article

25 Scopus citations
2014

Systems mapping of genes controlling chemotherapeutic drug efficiency for cancer stem cells

Wu, W., Feng, S., Wang, Y., Wang, N., Hao, H. & Wu, R., Aug 2014, In : Drug Discovery Today. 19, 8, p. 1125-1130 6 p.

Research output: Contribution to journalReview article

4 Scopus citations
2013

A dynamic framework for quantifying the genetic architecture of phenotypic plasticity

Wang, Z., Pang, X., Lv, Y., Xu, F., Zhou, T., Li, X., Feng, S., Li, J., Li, Z. & Wu, R., Jan 1 2013, In : Briefings in bioinformatics. 14, 1, p. 82-95 14 p., bbs009.

Research output: Contribution to journalReview article

14 Scopus citations

Delivering systems pharmacogenomics towards precision medicine through mathematics

Wang, Y., Wang, N., Wang, J., Wang, Z. & Wu, R., Jun 30 2013, In : Advanced Drug Delivery Reviews. 65, 7, p. 905-911 7 p.

Research output: Contribution to journalReview article

8 Scopus citations

Statistical resolution of missing longitudinal data in clinical pharmacogenomics

Wang, Z., Li, H., Wang, J., Li, J. & Wu, R., Jun 30 2013, In : Advanced Drug Delivery Reviews. 65, 7, p. 980-986 7 p.

Research output: Contribution to journalReview article

1 Scopus citations

Stochastic modeling of systems mapping in pharmacogenomics

Wang, Z., Luo, J., Fu, G., Wang, Z. & Wu, R., Jun 30 2013, In : Advanced Drug Delivery Reviews. 65, 7, p. 912-917 6 p.

Research output: Contribution to journalReview article

5 Scopus citations

Systems mapping of metabolic genes through control theory

Liu, G., Kong, L., Wang, Z., Wang, C. & Wu, R., Jun 30 2013, In : Advanced Drug Delivery Reviews. 65, 7, p. 918-928 11 p.

Research output: Contribution to journalReview article

5 Scopus citations

Theoretical Biology and Medical Modelling: Ensuring continued growth and future leadership

Nishiura, H., Rietman, E. A. & Wu, R., Jul 16 2013, In : Theoretical Biology and Medical Modelling. 10, 1, 43.

Research output: Contribution to journalReview article

2012

A pattern-mixture model for haplotype analysis of longitudinal traits with non-ignorable dropout

Li, H. & Wu, R., Jan 1 2012, In : Statistica Sinica. 22, 1, p. 337-357 21 p.

Research output: Contribution to journalReview article

2 Scopus citations
2011

A conceptual framework for pharmacodynamic genome-wide association studies in pharmacogenomics

Wu, R., Tong, C., Wang, Z., Mauger, D., Tantisira, K., Szefler, S. J., Chinchilli, V. M. & Israel, E., Oct 1 2011, In : Drug Discovery Today. 16, 19-20, p. 884-890 7 p.

Research output: Contribution to journalReview article

18 Scopus citations

How to compute which genes control drug resistance dynamics

Guo, Y., Luo, J., Wang, J., Wang, Y. & Wu, R., Apr 1 2011, In : Drug Discovery Today. 16, 7-8, p. 339-344 6 p.

Research output: Contribution to journalReview article

6 Scopus citations
2010

Designs for linkage analysis and association studies of complex diseases.

Cui, Y., Li, G., Li, S. & Wu, R., Nov 9 2010, In : Methods in molecular biology (Clifton, N.J.). 620, p. 219-242 24 p.

Research output: Contribution to journalReview article

14 Scopus citations

Mapping genes for plant structure, development and evolution: functional mapping meets ontology

He, Q., Berg, A., Li, Y., Vallejos, C. E. & Wu, R., Jan 1 2010, In : Trends in Genetics. 26, 1, p. 39-46 8 p.

Research output: Contribution to journalReview article

30 Scopus citations
2009

Computing genetic imprinting expressed by haplotypes.

Cheng, Y., Berg, A., Wu, S., Li, Y. & Wu, R., 2009, In : Methods in molecular biology (Clifton, N.J.). 573, p. 189-212 24 p.

Research output: Contribution to journalReview article

4 Scopus citations

Genetic dissection of complex endosperm traits

Wang, X., Xu, C., Wu, R. & Larkins, B. A., Jul 1 2009, In : Trends in Plant Science. 14, 7, p. 391-398 8 p.

Research output: Contribution to journalReview article

11 Scopus citations

Network models for dissecting plant development by functional mapping

Wu, S., Yap, J. S., Li, Y., Li, Q., Fu, G., Li, J., Das, K., Berg, A., Zeng, Y. & Wu, R., Sep 1 2009, In : Current Bioinformatics. 4, 3, p. 183-187 5 p.

Research output: Contribution to journalReview article

3 Scopus citations
2008

Modeling the genetic control of HIV-1 dynamics after highly active antiretroviral therapy

Ma, C. X., Li, Y. & Wu, R., May 1 2008, In : Current Genomics. 9, 3, p. 208-211 4 p.

Research output: Contribution to journalReview article

2 Scopus citations
2007

A general quantitative genetic model for haplotyping a complex trait in humans

Wu, S., Yang, J., Wang, C. & Wu, R., Aug 1 2007, In : Current Genomics. 8, 5, p. 343-350 8 p.

Research output: Contribution to journalReview article

8 Scopus citations

Mapping nucleotide sequences that encode complex binary disease traits with HapMap

Cui, Y., Fu, W., Sun, K., Romero, R. & Wu, R., Aug 1 2007, In : Current Genomics. 8, 5, p. 307-322 16 p.

Research output: Contribution to journalReview article

8 Scopus citations
2006

Clustering periodic patterns of gene expression based on fourier approximations

Kim, B. R., Littell, R. C. & Wu, R., May 1 2006, In : Current Genomics. 7, 3, p. 197-203 7 p.

Research output: Contribution to journalReview article

13 Scopus citations

Detecting sequence-sequence interactions for complex diseases

Lin, M. & Wu, R., Mar 1 2006, In : Current Genomics. 7, 1, p. 59-72 14 p.

Research output: Contribution to journalReview article

8 Scopus citations

Epistatic control of human obesity as revealed by linkage disequilibrium mapping: A report from the NHLBI-sponsored WISE study

Li, H., Wu, R., Lin, M., Terra, S. G., Pepine, C. J., McGorray, S. P., Johnson, B. D. & Johnson, J. A., Nov 1 2006, In : Current Genomics. 7, 7, p. 463-468 6 p.

Research output: Contribution to journalReview article

1 Scopus citations

Opinion: Functional mapping - How to map and study the genetic architecture of dynamic complex traits

Wu, R. & Lin, M., Mar 1 2006, In : Nature Reviews Genetics. 7, 3, p. 229-237 9 p.

Research output: Contribution to journalReview article

234 Scopus citations
2003

Molecular Dissection of Allometry, Ontogeny, and Plasticity: A Genomic View of Developmental Biology

Wu, R., Ma, C. X., Lou, X. Y. & Casella, G., Nov 2003, In : BioScience. 53, 11, p. 1041-1047 7 p.

Research output: Contribution to journalReview article

26 Scopus citations

Quantitative trait loci of growth trajectories in Populus

Wu, R., Ma, C. X., Yang, M. C. K., Chang, M., Littell, R. C., Santra, U., Wu, S. S., Yin, T., Huang, M., Wang, M. & Casella, G., Feb 1 2003, In : Genetical research. 81, 1, p. 51-64 14 p.

Research output: Contribution to journalReview article

28 Scopus citations
2002

A unified framework for mapping quantitative trait loci in bivalent tetraoploids using single-dose restriction fragments: A case study from alfalfa

Ma, C. X., Casella, G., Shen, Z. J., Osborn, T. C. & Wu, R., Dec 1 2002, In : Genome research. 12, 12, p. 1974-1981 8 p.

Research output: Contribution to journalReview article

13 Scopus citations
2001

Phenotypic plasticity of sylleptic branching: Genetic design of tree architecture

Wu, R. & Hinckley, T. M., Jan 1 2001, In : Critical Reviews in Plant Sciences. 20, 5, p. 467-485 19 p.

Research output: Contribution to journalReview article

32 Scopus citations
2000

Molecular genetics and developmental physiology: Implications for designing better forest crops

Wu, R., Hu, X. & Han, Y., Jan 1 2000, In : Critical Reviews in Plant Sciences. 19, 5, p. 377-393 17 p.

Research output: Contribution to journalReview article

9 Scopus citations