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Shaun A. Mahony, PhD

    • 2271 Citations
    • 23 h-Index
    20032019
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    • 3 Similar Profiles
    Transcription Factors Medicine & Life Sciences
    Genome Medicine & Life Sciences
    Chromatin Medicine & Life Sciences
    Motor Neurons Medicine & Life Sciences
    Nucleotide Motifs Medicine & Life Sciences
    Transcription Factor Mathematics
    Chromatin Immunoprecipitation Medicine & Life Sciences
    Genes Medicine & Life Sciences

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    Research Output 2003 2019

    1 Citation (Scopus)

    Characterizing protein-DNA binding event subtypes in ChIP-exo data

    Yamada, N., Lai, W. K. M., Farrell, N., Pugh, B. F. & Mahony, S., Mar 15 2019, In : Bioinformatics. 35, 6, p. 903-913 11 p.

    Research output: Contribution to journal › Article

    DNA-binding Protein
    Chromatin Immunoprecipitation
    Chromatin
    DNA-Binding Proteins
    DNA

    Direct prediction of regulatory elements from partial data without imputation

    Zhang, Y. & Mahony, S., Jan 1 2019, In : PLoS computational biology. 15, 11, e1007399.

    Research output: Contribution to journal › Article

    Open Access
    Imputation
    segmentation
    Genome
    Segmentation
    genome

    Joint inference and alignment of genome structures enables characterization of compartment-independent reorganization across cell types

    Rieber, L. & Mahony, S., Oct 8 2019, In : Epigenetics and Chromatin. 12, 1, 61.

    Research output: Contribution to journal › Article

    Open Access
    Joints
    Genome
    Histone Code
    K562 Cells
    Datasets
    6 Citations (Scopus)

    Proneural factors Ascl1 and Neurog2 contribute to neuronal subtype identities by establishing distinct chromatin landscapes

    Aydin, B., Kakumanu, A., Rossillo, M., Moreno-Estellés, M., Garipler, G., Ringstad, N., Flames, N., Mahony, S. & Mazzoni, E. O., Jun 1 2019, In : Nature Neuroscience. 22, 6, p. 897-908 12 p.

    Research output: Contribution to journal › Article

    Chromatin
    Transcription Factors
    E-Box Elements
    Embryonic Stem Cells
    Nervous System

    Sequence and chromatin determinants of transcription factor binding and the establishment of cell type-specific binding patterns

    Srivastava, D. & Mahony, S., Jan 1 2019, (Accepted/In press) In : Biochimica et Biophysica Acta - Gene Regulatory Mechanisms. 194443.

    Research output: Contribution to journal › Review article

    Chromatin
    Transcription Factors
    Histone Code
    DNA-Binding Proteins
    Histones