Projects per year
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Dive into the research topics where Shaun A. Mahony is active. These topic labels come from the works of this person. Together they form a unique fingerprint.
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Understanding the predeterminants of transcription factor regulatory activity
National Institute of General Medical Sciences
1/1/22 → 12/31/22
Project: Research project
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CAREER: Predicting transcription factor binding dynamics across cell types and species
6/1/21 → 5/31/26
Project: Research project
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Genome-wide structural organization of proteins within human gene regulatory complexes
Mahony, S. A. & PUGH, F.
National Institute of General Medical Sciences
1/19/18 → 12/31/21
Project: Research project
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ABI INNOVATION: Characterizing protein-DNA interactions from high-resolution assays
6/1/16 → 5/31/20
Project: Research project
Research output
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Domain-adaptive neural networks improve cross-species prediction of transcription factor binding
Cochran, K., Srivastava, D., Shrikumar, A., Balsubramani, A., Hardison, R. C., Kundaje, A. & Mahony, S., Mar 1 2022, In: Genome research. 32, 3, p. 512-523 12 p.Research output: Contribution to journal › Article › peer-review
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PEGR: a flexible management platform for reproducible epigenomic and genomic research
Shao, D., Kellogg, G. D., Nematbakhsh, A., Kuntala, P. K., Mahony, S., Pugh, B. F. & Lai, W. K. M., Dec 2022, In: Genome biology. 23, 1, 99.Research output: Contribution to journal › Article › peer-review
Open Access -
The BTB transcription factors ZBTB11 and ZFP131 maintain pluripotency by repressing pro-differentiation genes
Garipler, G., Lu, C., Morrissey, A., Lopez-Zepeda, L. S., Pei, Y., Vidal, S. E., Zen Petisco Fiore, A. P., Aydin, B., Stadtfeld, M., Ohler, U., Mahony, S., Sanjana, N. E. & Mazzoni, E. O., Mar 15 2022, In: Cell Reports. 38, 11, 110524.Research output: Contribution to journal › Article › peer-review
Open Access -
A high-resolution protein architecture of the budding yeast genome
Rossi, M. J., Kuntala, P. K., Lai, W. K. M., Yamada, N., Badjatia, N., Mittal, C., Kuzu, G., Bocklund, K., Farrell, N. P., Blanda, T. R., Mairose, J. D., Basting, A. V., Mistretta, K. S., Rocco, D. J., Perkinson, E. S., Kellogg, G. D., Mahony, S. & Pugh, B. F., Apr 8 2021, In: Nature. 592, 7853, p. 309-314 6 p.Research output: Contribution to journal › Article › peer-review
24 Scopus citations -
An interpretable bimodal neural network characterizes the sequence and preexisting chromatin predictors of induced transcription factor binding
Srivastava, D., Aydin, B., Mazzoni, E. O. & Mahony, S., Dec 2021, In: Genome biology. 22, 1, 20.Research output: Contribution to journal › Article › peer-review
Open Access2 Scopus citations