Shaun A. Mahony, PhD

Assistant Professor, Biochemistry & Molecular Biology
Penn State Cancer Institute
Cancer Institute, Mechanisms of Carcinogenesis

Source: Scopus
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2 Active

Genome-wide structural organization of proteins within human gene regulatory complexes
Mahony, S. A. & PUGH, F.
National Institute of General Medical Sciences
1/19/18 → 12/31/21
Project: Research project
A 2D segmentation method for jointly characterizing epigenetic dynamics in multiple cell lines
Mahony, S. A. & Zhang, Y.
National Institute of General Medical Sciences
8/1/17 → 7/31/21
Project: Research project

2604 Citations
23 h-Index
44 Article
6 Conference contribution
3 Review article
1 Conference article
More
- 1 Editorial

An interpretable bimodal neural network characterizes the sequence and preexisting chromatin predictors of induced transcription factor binding
Srivastava, D., Aydin, B., Mazzoni, E. O. & Mahony, S., Dec 2021, In: Genome biology. 22, 1, 20.
Research output: Contribution to journal › Article › peer-review

Open Access
The PfAP2-G2 transcription factor is a critical regulator of gametocyte maturation
Singh, S., Santos, J. M., Orchard, L. M., Yamada, N., van Biljon, R., Painter, H. J., Mahony, S. & Llinás, M., 2021, (Accepted/In press) In: Molecular Microbiology.
Research output: Contribution to journal › Article › peer-review
Alignment and quantification of ChIP-exo crosslinking patterns reveal the spatial organization of protein-DNA complexes
Yamada, N., Rossi, M. J., Farrell, N., Pugh, B. F. & Mahony, S., Nov 18 2020, In: Nucleic acids research. 48, 20, p. 11215-11226 12 p.
Research output: Contribution to journal › Article › peer-review

Open Access
An integrative view of the regulatory and transcriptional landscapes in mouse hematopoiesis
Xiang, G., Keller, C. A., Heuston, E., Giardine, B. M., An, L., Wixom, A. Q., Miller, A., Cockburn, A., Sauria, M. E. G., Weaver, K., Lichtenberg, J., Göttgens, B., Li, Q., Bodine, D., Mahony, S., Taylor, J., Blobel, G. A., Weiss, M. J., Cheng, Y., Yue, F. & 4 others, Hughes, J., Higgs, D. R., Zhang, Y. & Hardison, R. C., 2020, In: Genome research. 30, 3, p. 472-484 13 p.
Research output: Contribution to journal › Article › peer-review

Open Access
4 Scopus citations
Assessing relationships between chromatin interactions and regulatory genomic activities using the self-organizing map
Kunz, T., Rieber, L. & Mahony, S., Jul 9 2020, (E-pub ahead of print) In: Methods.
Research output: Contribution to journal › Article › peer-review
1 Scopus citations

Genome-wide structural organization of proteins within human gene regulatory complexes

A 2D segmentation method for jointly characterizing epigenetic dynamics in multiple cell lines

An interpretable bimodal neural network characterizes the sequence and preexisting chromatin predictors of induced transcription factor binding

The PfAP2-G2 transcription factor is a critical regulator of gametocyte maturation

Alignment and quantification of ChIP-exo crosslinking patterns reveal the spatial organization of protein-DNA complexes

An integrative view of the regulatory and transcriptional landscapes in mouse hematopoiesis

Assessing relationships between chromatin interactions and regulatory genomic activities using the self-organizing map