Thomas Keith Wood

    • 14766 Citations
    • 68 h-Index
    1990 …2020
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    Research Output 1990 2020

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    2020

    Persister Cells Resuscitate Using Membrane Sensors that Activate Chemotaxis, Lower cAMP Levels, and Revive Ribosomes

    Yamasaki, R., Song, S., Benedik, M. J. & Wood, T. K., Jan 24 2020, In : iScience. 23, 1, 100792.

    Research output: Contribution to journalArticle

    Open Access
    Chemotaxis
    Ribosomes
    Membranes
    Food
    Resuscitation
    2019

    Deciphering the Antitoxin-Regulated Bacterial Stress Response via Single-Cell Analysis

    Wu, L., Zhang, M., Song, Y., Deng, M., He, S., Su, L., Chen, Y., Wood, T. K. & Yan, X., Dec 20 2019, In : ACS chemical biology. 14, 12, p. 2859-2866 8 p.

    Research output: Contribution to journalArticle

    Single-Cell Analysis
    Antitoxins
    Bacteria
    Population
    Drug Tolerance
    2 Citations (Scopus)

    Identification of a potent indigoid persister antimicrobial by screening dormant cells

    Song, S., Gong, T., Yamasaki, R., Kim, J. S. & Wood, T. K., Jan 1 2019, In : Biotechnology and bioengineering. 116, 9, p. 2263-2274 12 p.

    Research output: Contribution to journalArticle

    Open Access
    Screening
    DNA
    Cells
    Membranes
    Cisplatin

    Interkingdom signal indole inhibits Pseudomonas aeruginosa persister cell waking

    Zhang, W., Yamasaki, R., Song, S. & Wood, T. K., Dec 1 2019, In : Journal of Applied Microbiology. 127, 6, p. 1768-1775 8 p.

    Research output: Contribution to journalArticle

    Pseudomonas aeruginosa
    Resuscitation
    Escherichia coli
    indole
    Bacteria

    Persister cells resuscitate via ribosome modification by 23S rRNA pseudouridine synthase RluD

    Song, S. & Wood, T. K., Jan 1 2019, (Accepted/In press) In : Environmental microbiology.

    Research output: Contribution to journalArticle

    ribosomes
    Ribosomes
    ribosomal RNA
    nutrient
    subpopulation
    1 Citation (Scopus)

    Phages Mediate Bacterial Self-Recognition

    Song, S., Guo, Y., Kim, J. S., Wang, X. & Wood, T. K., Apr 16 2019, In : Cell Reports. 27, 3, p. 737-749.e4

    Research output: Contribution to journalArticle

    Open Access
    Bacteriophages
    Escherichia coli
    Siphoviridae
    Prophages
    Ports and harbors
    1 Citation (Scopus)

    Pseudogene YdfW in Escherichia coli decreases hydrogen production through nitrate respiration pathways

    Mokhtar, M., Mohd Yusoff, M. Z., Mohamad Ali, M. S., Mustapha, N. A., Wood, T. K. & Maeda, T., Jun 21 2019, In : International Journal of Hydrogen Energy. 44, 31, p. 16212-16223 12 p.

    Research output: Contribution to journalArticle

    respiration
    hydrogen production
    Hydrogen production
    Escherichia
    Escherichia coli
    3 Citations (Scopus)

    Quorum sensing between Gram-negative bacteria responsible for methane production in a complex waste sewage sludge consortium

    Nguyen, P. D. T., Mustapha, N. A., Kadokami, K., Garcia-Contreras, R., Wood, T. K. & Maeda, T., Feb 1 2019, In : Applied Microbiology and Biotechnology. 103, 3, p. 1485-1495 11 p.

    Research output: Contribution to journalArticle

    Quorum Sensing
    Methane
    Sewage
    Gram-Negative Bacteria
    Solid Phase Extraction

    Resistance to oxidative stress by inner membrane protein ElaB is regulated by OxyR and RpoS

    Guo, Y., Li, Y., Zhan, W., Wood, T. K. & Wang, X., Mar 1 2019, In : Microbial Biotechnology. 12, 2, p. 392-404 13 p.

    Research output: Contribution to journalArticle

    Oxidative stress
    Membrane Proteins
    Oxidative Stress
    Proteins
    Membranes

    Seeding Public Goods Is Essential for Maintaining Cooperation in Pseudomonas aeruginosa

    Loarca, D., Díaz, D., Quezada, H., Guzmán-Ortiz, A. L., Rebollar-Ruiz, A., Presas, A. M. F., Ramírez-Peris, J., Franco-Cendejas, R., Maeda, T., Wood, T. K. & García-Contreras, R., Oct 9 2019, In : Frontiers in Microbiology. 10, 2322.

    Research output: Contribution to journalArticle

    Open Access
    Exopeptidases
    Pseudomonas aeruginosa
    Population Growth
    Pseudomonas Infections
    Quorum Sensing

    Symbiosis of a P2-family phage and deep-sea Shewanella putrefaciens

    Liu, X., Tang, K., Zhang, D., Li, Y., Liu, Z., Yao, J., Wood, T. K. & Wang, X., Nov 1 2019, In : Environmental microbiology. 21, 11, p. 4212-4232 21 p.

    Research output: Contribution to journalArticle

    Bacteriophage P2
    Shewanella putrefaciens
    Prophages
    Symbiosis
    symbiosis

    Toxins of toxin/antitoxin systems are inactivated primarily through promoter mutations

    Fernandez-Garcia, L., Kim, J. S., Tomas, M. & Wood, T. K., Dec 1 2019, In : Journal of Applied Microbiology. 127, 6, p. 1859-1868 10 p.

    Research output: Contribution to journalArticle

    Antitoxins
    Mutation
    Plasmids
    Genes
    Escherichia coli K12
    1 Citation (Scopus)

    σ54-Dependent regulator DVU2956 switches Desulfovibrio vulgaris from biofilm formation to planktonic growth and regulates hydrogen sulfide production

    Zhu, L., Gong, T., Wood, T. L., Yamasaki, R. & Wood, T. K., Oct 1 2019, In : Environmental microbiology. 21, 10, p. 3564-3576 13 p.

    Research output: Contribution to journalArticle

    Desulfovibrio vulgaris
    Hydrogen Sulfide
    hydrogen sulfide
    Biofilms
    biofilm
    2018
    5 Citations (Scopus)

    Electron carriers increase electricity production in methane microbial fuel cells that reverse methanogenesis

    Yamasaki, R., Maeda, T. & Wood, T. K., Jul 25 2018, In : Biotechnology for Biofuels. 11, 1, 211.

    Research output: Contribution to journalArticle

    Bioelectric Energy Sources
    Microbial fuel cells
    Electricity
    Methane
    methanogenesis
    4 Citations (Scopus)

    GhoT of the GhoT/GhoS toxin/antitoxin system damages lipid membranes by forming transient pores

    Kim, J. S., Schantz, A. B., Song, S., Kumar, M. & Wood, T. K., Mar 4 2018, In : Biochemical and Biophysical Research Communications. 497, 2, p. 467-472 6 p.

    Research output: Contribution to journalArticle

    Antitoxins
    Membrane Lipids
    Lipid bilayers
    Lipid Bilayers
    Membranes
    5 Citations (Scopus)

    Glycoside hydrolase DisH from Desulfovibrio vulgaris degrades the N-acetylgalactosamine component of diverse biofilms

    Zhu, L., Poosarla, V. G., Song, S., Wood, T. L., Miller, D. S., Yin, B. & Wood, T. K., Jun 2018, In : Environmental microbiology. 20, 6, p. 2026-2037 12 p.

    Research output: Contribution to journalArticle

    Desulfovibrio vulgaris
    beta-N-acetylhexosaminidase
    Acetylgalactosamine
    Hexosaminidases
    Glycoside Hydrolases
    1 Citation (Scopus)

    Pseudogene product YqiG is important for pflB expression and biohydrogen production in Escherichia coli BW25113

    Zakaria, M. A., Mohd Yusoff, M. Z., Zakaria, M. R., Hassan, M. A., Wood, T. K. & Maeda, T., Oct 1 2018, In : 3 Biotech. 8, 10, 435.

    Research output: Contribution to journalArticle

    hydrogen production
    Pseudogenes
    pseudogenes
    Escherichia coli
    protein
    5 Citations (Scopus)

    Pyocyanin restricts social cheating in Pseudomonas aeruginosa

    Castañeda-Tamez, P., Ramírez-Peris, J., Pérez-Velázquez, J., Kuttler, C., Jalalimanesh, A., Saucedo-Mora, M., Jiménez-Cortés, J. G., Maeda, T., González, Y., Tomás, M., Wood, T. K. & García-Contreras, R., Jun 27 2018, In : Frontiers in Microbiology. 9, JUN, 1348.

    Research output: Contribution to journalArticle

    Pyocyanine
    Quorum Sensing
    Pseudomonas aeruginosa
    Bacteria
    Exopeptidases
    5 Citations (Scopus)

    Rhamnolipids from Pseudomonas aeruginosa disperse the biofilms of sulfate-reducing bacteria

    Wood, T. L., Gong, T., Zhu, L., Miller, J., Miller, D. S., Yin, B. & Wood, T. K., Dec 1 2018, In : npj Biofilms and Microbiomes. 4, 1, 22.

    Research output: Contribution to journalArticle

    Biofilms
    Pseudomonas aeruginosa
    Sulfates
    Bacteria
    Desulfovibrio vulgaris
    2 Citations (Scopus)

    Serine hydroxymethyltransferase ShrA (PA2444) controls rugose small-colony variant formation in Pseudomonas aeruginosa

    Pu, M., Sheng, L., Song, S., Gong, T. & Wood, T. K., Feb 27 2018, In : Frontiers in Microbiology. 9, FEB, 315.

    Research output: Contribution to journalArticle

    Glycine Hydroxymethyltransferase
    Biofilms
    NAD
    Pseudomonas aeruginosa
    Oxidation-Reduction
    12 Citations (Scopus)

    Single cell observations show persister cells wake based on ribosome content

    Kim, J. S., Yamasaki, R., Song, S., Zhang, W. & Wood, T. K., Jun 2018, In : Environmental microbiology. 20, 6, p. 2085-2098 14 p.

    Research output: Contribution to journalArticle

    ribosomes
    Ribosomes
    antibiotics
    dormancy
    phenotype
    2 Citations (Scopus)

    Substrate binding protein DppA1 of ABC transporter DppBCDF increases biofilm formation in Pseudomonas aeruginosa by inhibiting Pf5 prophage lysis

    Lee, Y., Song, S., Sheng, L., Zhu, L., Kim, J. S. & Wood, T. K., Jan 24 2018, In : Frontiers in Microbiology. 9, JAN, 30.

    Research output: Contribution to journalArticle

    Prophages
    ATP-Binding Cassette Transporters
    Biofilms
    Pseudomonas aeruginosa
    Carrier Proteins
    13 Citations (Scopus)

    Viable bacteria persist on antibiotic spacers following two-stage revision for periprosthetic joint infection

    Ma, D., Shanks, R. M. Q., Davis, C. M., Craft, D. W., Wood, T. K., Hamlin, B. R. & Urish, K. L., Jan 2018, In : Journal of Orthopaedic Research. 36, 1, p. 452-458 7 p.

    Research output: Contribution to journalArticle

    Reoperation
    Anti-Bacterial Agents
    Bacteria
    Joints
    Polymerase Chain Reaction
    22 Citations (Scopus)

    Viable but non-culturable and persistence describe the same bacterial stress state

    Kim, J. S., Chowdhury, N., Yamasaki, R. & Wood, T. K., Jun 1 2018, In : Environmental microbiology. 20, 6, p. 2038-2048 11 p.

    Research output: Contribution to journalArticle

    phenotype
    persistence
    starvation
    lysis
    cells
    2017
    4 Citations (Scopus)

    A Genome-Scale Modeling Approach to Quantify Biofilm Component Growth of Salmonella Typhimurium

    Ribaudo, N., Li, X., Davis, B., Wood, T. K. & Huang, Z. J., Jan 1 2017, In : Journal of Food Science. 82, 1, p. 154-166 13 p.

    Research output: Contribution to journalArticle

    Salmonella typhimurium
    Biofilms
    Salmonella Typhimurium
    biofilm
    Genome
    9 Citations (Scopus)

    Computational de novo design of antibodies binding to a peptide with high affinity

    Poosarla, V. G., Li, T., Goh, B. C., Schulten, K., Wood, T. K. & Maranas, C. D., Jun 2017, In : Biotechnology and bioengineering. 114, 6, p. 1331-1342 12 p.

    Research output: Contribution to journalArticle

    Antibodies
    Peptides
    Antigens
    Interferometry
    Single-Chain Antibodies
    6 Citations (Scopus)

    Dispersal and inhibitory roles of mannose, 2-deoxy-d-glucose and N-acetylgalactosaminidase on the biofilm of Desulfovibrio vulgaris

    Poosarla, V. G., Wood, T. L., Zhu, L., Miller, D. S., Yin, B. & Wood, T. K., Dec 1 2017, In : Environmental Microbiology Reports. 9, 6, p. 779-787 9 p.

    Research output: Contribution to journalArticle

    Desulfovibrio vulgaris
    Mannose
    Biofilms
    mannose
    biofilm
    39 Citations (Scopus)

    Electricity from methane by reversing methanogenesis

    McAnulty, M. J., Poosarla, V. G., Kim, K. Y., Jasso-Chávez, R., Logan, B. E. & Wood, T. K., May 17 2017, In : Nature communications. 8, 15419.

    Research output: Contribution to journalArticle

    Electricity
    reversing
    Methane
    electricity
    methane
    8 Citations (Scopus)

    Indole: An evolutionarily conserved influencer of behavior across kingdoms

    Tomberlin, J. K., Crippen, T. L., Wu, G., Griffin, A. S., Wood, T. K. & Kilner, R. M., Feb 1 2017, In : BioEssays. 39, 2, 1600203.

    Research output: Contribution to journalArticle

    Cues
    Biocommunications
    Animal Communication
    Biochemistry
    Metabolism
    3 Citations (Scopus)

    Interkingdom cues by bacteria associated with conspecific and heterospecific eggs of cochliomyia macellaria and chrysomya rufifacies (diptera: Calliphoridae) potentially govern succession on carrion

    Brundage, A. L., Crippen, T. L., Singh, B., Benbow, M. E., Liu, W., Tarone, A. M., Wood, T. K. & Tomberlin, J. K., Jan 1 2017, In : Annals of the Entomological Society of America. 110, 1, p. 73-82 10 p.

    Research output: Contribution to journalArticle

    Chrysomya rufifacies
    Cochliomyia macellaria
    dead animals
    Calliphoridae
    bacteria
    15 Citations (Scopus)

    Metabolic engineering of Methanosarcina acetivorans for lactate production from methane

    McAnulty, M. J., Poosarla, V. G., Li, J., Soo, V. W. C., Zhu, F. & Wood, T. K., Apr 1 2017, In : Biotechnology and bioengineering. 114, 4, p. 852-861 10 p.

    Research output: Contribution to journalArticle

    Methanosarcina
    Metabolic engineering
    Metabolic Engineering
    Methane
    Lactic Acid
    1 Citation (Scopus)

    Metabolic manipulation of methanogens for methane machinations

    Wood, T. K., Jan 1 2017, In : Microbial Biotechnology. 10, 1, p. 9-10 2 p.

    Research output: Contribution to journalArticle

    Methanogens
    Metabolic engineering
    Metabolic Engineering
    Biofuels
    Archaea
    2 Citations (Scopus)

    Oceans as bioenergy pools for methane production using activated methanogens in waste sewage sludge

    Mohd Yasin, N. H., Ikegami, A., Wood, T. K., Yu, C. P., Haruyama, T., Takriff, M. S. & Maeda, T., Jan 1 2017, In : Applied Energy. 202, p. 399-407 9 p.

    Research output: Contribution to journalArticle

    Methanogens
    Sewage sludge
    bioenergy
    Methane
    methane
    8 Citations (Scopus)

    Reactive micromixing eliminates fouling and concentration polarization in reverse osmosis membranes

    Guha, R., Xiong, B., Geitner, M., Moore, T., Wood, T. K., Velegol, D. & Kumar, M., Jan 1 2017, In : Journal of Membrane Science. 542, p. 8-17 10 p.

    Research output: Contribution to journalArticle

    Osmosis
    reverse osmosis
    Osmosis membranes
    fouling
    Reverse osmosis
    23 Citations (Scopus)

    Repurposing of anticancer drugs for the treatment of bacterial infections

    Soo, V. W. C., Kwan, B. W., Quezada, H., Castillo-Juárez, I., Pérez-Eretza, B., García-Contreras, S. J., Martínez-Vázquez, M., Wood, T. K. & García-Contreras, R., Apr 1 2017, In : Current Topics in Medicinal Chemistry. 17, 10, p. 1157-1176 20 p.

    Research output: Contribution to journalArticle

    Drug Repositioning
    Bacterial Infections
    Anti-Bacterial Agents
    Gallium
    Mitomycin
    20 Citations (Scopus)

    Repurposing the anticancer drug mitomycin C for the treatment of persistent Acinetobacter baumannii infections

    Cruz-Muñiz, M. Y., López-Jacome, L. E., Hernández-Durán, M., Franco-Cendejas, R., Licona-Limón, P., Ramos-Balderas, J. L., Martinéz-Vázquez, M., Belmont-Díaz, J. A., Wood, T. K. & García-Contreras, R., Jan 1 2017, In : International Journal of Antimicrobial Agents. 49, 1, p. 88-92 5 p.

    Research output: Contribution to journalArticle

    Acinetobacter Infections
    Drug Repositioning
    Acinetobacter baumannii
    Mitomycin
    Microbial Sensitivity Tests
    16 Citations (Scopus)

    Strategies for combating persister cell and biofilm infections

    Wood, T. K., Sep 2017, In : Microbial Biotechnology. 10, 5, p. 1054-1056 3 p.

    Research output: Contribution to journalArticle

    Biofilms
    Antibiotics
    Anti-Bacterial Agents
    Bacteria
    Infection
    5 Citations (Scopus)

    Tail-anchored inner membrane protein ElaB increases resistance to stress while reducing persistence in Escherichia coli

    Guo, Y., Liu, X., Li, B., Yao, J., Wood, T. K. & Wang, X., May 1 2017, In : Journal of bacteriology. 199, 9, e00057-17.

    Research output: Contribution to journalArticle

    Membrane Proteins
    Escherichia coli
    Membranes
    Oxidative Stress
    Sigma Factor
    17 Citations (Scopus)

    Tolerant, growing cells from nutrient shifts are not persister cells

    Kim, J. S. & Wood, T. K., Mar 1 2017, In : mBio. 8, 2, e00354-17.

    Research output: Contribution to journalArticle

    Food
    Population
    Anti-Bacterial Agents
    Phenotype
    2016
    10 Citations (Scopus)

    An oxygen-sensitive toxin-antitoxin system

    Marimon, O., Teixeira, J. M. C., Cordeiro, T. N., Soo, V. W. C., Wood, T. L., Mayzel, M., Amata, I., García, J., Morera, A., Gay, M., Vilaseca, M., Orekhov, V. Y., Wood, T. K. & Pons, M., Dec 8 2016, In : Nature communications. 7, 13634.

    Research output: Contribution to journalArticle

    Antitoxins
    cysteine
    Cysteine
    Oxygen
    helices
    27 Citations (Scopus)

    Antibiotic-tolerant Staphylococcus aureus Biofilm Persists on Arthroplasty Materials

    Urish, K. L., DeMuth, P. W., Kwan, B. W., Craft, D. W., Ma, D., Haider, H., Tuan, R. S., Wood, T. K. & Davis, C. M., Jul 1 2016, In : Clinical orthopaedics and related research. 474, 7, p. 1649-1656 8 p.

    Research output: Contribution to journalArticle

    Biofilms
    Arthroplasty
    Staphylococcus aureus
    Cefazolin
    Anti-Bacterial Agents
    21 Citations (Scopus)

    Assessing methanotrophy and carbon fixation for biofuel production by Methanosarcina acetivorans

    Nazem-Bokaee, H., Gopalakrishnan, S., Ferry, J. G., Wood, T. K. & Maranas, C. D., Jan 17 2016, In : Microbial Cell Factories. 15, 1, 10.

    Research output: Contribution to journalArticle

    Methanosarcina
    Carbon Cycle
    Biofuels
    Methane
    Carbon
    28 Citations (Scopus)

    DNA-crosslinker cisplatin eradicates bacterial persister cells

    Chowdhury, N., Wood, T. L., Martínez-Vázquez, M., García-Contreras, R. & Wood, T. K., Sep 1 2016, In : Biotechnology and bioengineering. 113, 9, p. 1984-1992 9 p.

    Research output: Contribution to journalArticle

    Escherichia coli
    Cisplatin
    Bacteria
    DNA
    Pseudomonas aeruginosa
    18 Citations (Scopus)

    Halogenated indoles eradicate bacterial persister cells and biofilms

    Lee, J. H., Kim, Y. G., Gwon, G., Wood, T. K. & Lee, J., Dec 1 2016, In : AMB Express. 6, 1, 123.

    Research output: Contribution to journalArticle

    Indoles
    Biofilms
    Staphylococcus aureus
    Bacterial Drug Resistance
    Escherichia coli
    23 Citations (Scopus)

    Living biofouling-resistant membranes as a model for the beneficial use of engineered biofilms

    Wood, T. L., Guha, R., Tang, L., Geitner, M., Kumar, M. & Wood, T. K., May 17 2016, In : Proceedings of the National Academy of Sciences of the United States of America. 113, 20, p. E2802-E2811

    Research output: Contribution to journalArticle

    Biofouling
    Biofilms
    Membranes
    Water Purification
    Epichlorohydrin
    43 Citations (Scopus)

    Persistence Increases in the Absence of the Alarmone Guanosine Tetraphosphate by Reducing Cell Growth

    Chowdhury, N., Kwan, B. W. & Wood, T. K., Feb 3 2016, In : Scientific reports. 6, 20519.

    Research output: Contribution to journalArticle

    Guanosine Tetraphosphate
    Growth
    Antitoxins
    Food
    Proteins
    52 Citations (Scopus)

    Reversing methanogenesis to capture methane for liquid biofuel precursors

    Soo, V. W. C., McAnulty, M. J., Tripathi, A., Zhu, F., Zhang, L., Hatzakis, E., Smith, P. B., Agrawal, S., Nazem-Bokaee, H., Gopalakrishnan, S., Salis, H. M., Ferry, J. G., Maranas, C. D., Patterson, A. D. & Wood, T. K., Jan 14 2016, In : Microbial Cell Factories. 15, 1, 11.

    Research output: Contribution to journalArticle

    Biofuels
    Methane
    Liquids
    Coenzymes
    Acetates
    13 Citations (Scopus)

    Streptomyces-derived actinomycin D inhibits biofilm formation by Staphylococcus aureus and its hemolytic activity

    Lee, J. H., Kim, Y. G., Lee, K., Kim, C. J., Park, D. J., Ju, Y., Lee, J. C., Wood, T. K. & Lee, J., Jan 2 2016, In : Biofouling. 32, 1, p. 45-56 12 p.

    Research output: Contribution to journalArticle

    actinomycin D
    Streptomyces
    Dactinomycin
    Biofilms
    biofilm
    24 Citations (Scopus)
    Pyocyanine
    Antitoxins
    Virulence Factors
    Biofilms
    Pseudomonas aeruginosa
    2 Citations (Scopus)

    Toxin MqsR cleaves single-stranded mRNA with various 5' ends

    Chowdhury, N., Kwan, B. W., McGibbon, L. C., Babitzke, P. & Wood, TK., Jun 1 2016, In : MicrobiologyOpen. 5, 3, p. 370-377 8 p.

    Research output: Contribution to journalArticle

    Antitoxins
    Messenger RNA
    RNA
    RNA Stability
    Bile Acids and Salts