William George Noid

    • 3080 Citations
    • 27 h-Index
    20032020

    Research output per year

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    Research Output

    • 3080 Citations
    • 27 h-Index
    • 46 Article
    • 3 Chapter
    • 3 Review article
    • 1 Comment/debate
    2020

    Investigation of coarse-grained models across a glass transition

    Szukalo, R. J. & Noid, W. G., Jan 1 2020, (Accepted/In press) In : Soft Materials.

    Research output: Contribution to journalArticle

    2019

    Analysis of local density potentials

    Delyser, M. R. & Noid, W. G., Dec 14 2019, In : Journal of Chemical Physics. 151, 22, 224106.

    Research output: Contribution to journalArticle

    Dual approach for effective potentials that accurately model structure and energetics

    Lebold, K. M. & Noid, W. G., Jun 21 2019, In : Journal of Chemical Physics. 150, 23, 234107.

    Research output: Contribution to journalArticle

    Open Access
    8 Scopus citations
    1 Scopus citations

    Simple Simulation Model for Exploring the Effects of Solvent and Structure on Asphaltene Aggregation

    Dunn, N. J. H., Gutama, B. & Noid, W. G., Jun 24 2019, In : Journal of Physical Chemistry B. 123, 28, p. 6111-6122 12 p.

    Research output: Contribution to journalArticle

    2 Scopus citations
    8 Scopus citations
    2018

    BOCS: Bottom-up Open-source Coarse-graining Software

    Dunn, N. J. H., Lebold, K. M., Delyser, M. R., Rudzinski, J. F. & Noid, W. G., Apr 5 2018, In : Journal of Physical Chemistry B. 122, 13, p. 3363-3377 15 p.

    Research output: Contribution to journalArticle

    14 Scopus citations
    2017

    Extended Ensemble Approach to Transferable Potentials for Low-Resolution Coarse-Grained Models of Ionomers

    Rudzinski, J. F., Lu, K., Milner, S. T., Maranas, J. K. & Noid, W. G., May 9 2017, In : Journal of Chemical Theory and Computation. 13, 5, p. 2185-2201 17 p.

    Research output: Contribution to journalArticle

    6 Scopus citations

    Extending pressure-matching to inhomogeneous systems via local-density potentials

    Delyser, M. R. & Noid, W. G., Oct 7 2017, In : Journal of Chemical Physics. 147, 13, 134111.

    Research output: Contribution to journalArticle

    20 Scopus citations

    Trimethylamine N-oxide stabilizes proteins via a distinct mechanism compared with betaine and glycine

    Liao, Y. T., Manson, A. C., DeLyser, M. R., Noid, W. G. & Cremer, P. S., Mar 7 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 10, p. 2479-2484 6 p.

    Research output: Contribution to journalArticle

    47 Scopus citations
    2016

    Assessing Coupled Protein Folding and Binding Through Temperature-Dependent Isothermal Titration Calorimetry

    Sahu, D., Bastidas, M., Lawrence, C. W., Noid, W. G. & Showalter, S. A., Jan 1 2016, Methods in Enzymology. Academic Press Inc., p. 23-45 23 p. (Methods in Enzymology; vol. 567).

    Research output: Chapter in Book/Report/Conference proceedingChapter

    4 Scopus citations
    23 Scopus citations

    Van der Waals Perspective on Coarse-Graining: Progress toward Solving Representability and Transferability Problems

    Dunn, N. J. H., Foley, T. T. & Noid, W. G., Dec 20 2016, In : Accounts of Chemical Research. 49, 12, p. 2832-2840 9 p.

    Research output: Contribution to journalArticle

    37 Scopus citations
    2015

    A generalized-Yvon-Born-Green method for coarse-grained modeling: Advances, Challenges, and Insight

    Rudzinski, J. F. & Noid, W. G., Sep 26 2015, In : European Physical Journal: Special Topics. 224, 12, p. 2193-2216 24 p.

    Research output: Contribution to journalReview article

    19 Scopus citations
    52 Scopus citations

    Bottom-up coarse-graining of peptide ensembles and helix-coil transitions

    Rudzinski, J. F. & Noid, W. G., Mar 10 2015, In : Journal of Chemical Theory and Computation. 11, 3, p. 1278-1291 14 p.

    Research output: Contribution to journalArticle

    29 Scopus citations

    The impact of resolution upon entropy and information in coarse-grained models

    Foley, T. T., Shell, M. S. & Noid, W. G., Dec 28 2015, In : Journal of Chemical Physics. 143, 24, 243104.

    Research output: Contribution to journalArticle

    58 Scopus citations
    2014

    Deciphering the glycosylation code

    Ellis, C. R. & Noid, W. G., Oct 2 2014, In : Journal of Physical Chemistry B. 118, 39, p. 11462-11469 8 p.

    Research output: Contribution to journalArticle

    5 Scopus citations
    1 Scopus citations

    Investigation of coarse-grained mappings via an iterative generalized Yvon-Born-Green method

    Rudzinski, J. F. & Noid, W. G., Jul 17 2014, In : Journal of Physical Chemistry B. 118, 28, p. 8295-8312 18 p.

    Research output: Contribution to journalArticle

    31 Scopus citations

    Role of ordered proteins in the folding-upon-binding of intrinsically disordered proteins

    Lawrence, C. W., Kumar, S., Noid, W. G. & Showalter, S. A., Mar 6 2014, In : Journal of Physical Chemistry Letters. 5, 5, p. 833-838 6 p.

    Research output: Contribution to journalArticle

    12 Scopus citations

    Scaling behavior and local structure of ion aggregates in single-ion conductors

    Lu, K., Rudzinski, J. F., Noid, W. G., Milner, S. T. & Maranas, J. K., Feb 21 2014, In : Soft Matter. 10, 7, p. 978-989 12 p.

    Research output: Contribution to journalArticle

    27 Scopus citations
    2013

    Native-based simulations of the binding interaction between RAP74 and the disordered FCP1 peptide

    Kumar, S., Showalter, S. A. & Noid, W. G., Mar 21 2013, In : Journal of Physical Chemistry B. 117, 11, p. 3074-3085 12 p.

    Research output: Contribution to journalArticle

    10 Scopus citations

    Perspective: Coarse-grained models for biomolecular systems

    Noid, W. G., Sep 7 2013, In : Journal of Chemical Physics. 139, 9, 090901.

    Research output: Contribution to journalReview article

    376 Scopus citations

    Systematic methods for structurally consistent coarse-grained models

    Noid, W. G., 2013, Biomolecular Simulations: Biomolecular Simulations. Humana Press Inc., p. 487-531 45 p. (Methods in Molecular Biology; vol. 924).

    Research output: Chapter in Book/Report/Conference proceedingChapter

    40 Scopus citations
    2012

    Specific and nonspecific effects of glycosylation

    Ellis, C. R., Maiti, B. & Noid, W. G., May 16 2012, In : Journal of the American Chemical Society. 134, 19, p. 8184-8193 10 p.

    Research output: Contribution to journalArticle

    24 Scopus citations

    The role of many-body correlations in determining potentials for coarse-grained models of equilibrium structure

    Rudzinski, J. F. & Noid, W. G., Jul 26 2012, In : Journal of Physical Chemistry B. 116, 29, p. 8621-8635 15 p.

    Research output: Contribution to journalArticle

    27 Scopus citations
    2011

    Atomistic simulations reveal structural disorder in the RAP74-FCP1 complex

    Wostenberg, C., Kumar, S., Noid, W. G. & Showalter, S. A., Nov 24 2011, In : Journal of Physical Chemistry B. 115, 46, p. 13731-13739 9 p.

    Research output: Contribution to journalArticle

    15 Scopus citations

    Coarse-graining entropy, forces, and structures

    Rudzinski, J. F. & Noid, W. G., Dec 7 2011, In : Journal of Chemical Physics. 135, 21, 214101.

    Research output: Contribution to journalArticle

    83 Scopus citations

    Generalized-Yvon-Born-Green model of toluene

    Ellis, C. R., Rudzinski, J. F. & Noid, W. G., Aug 25 2011, In : Macromolecular Theory and Simulations. 20, 7, p. 478-495 18 p.

    Research output: Contribution to journalArticle

    15 Scopus citations
    2010

    A generalized-Yvon-Born-Green theory for determining coarse-grained interaction potentials

    Mullinax, J. W. & Noid, W. G., Apr 1 2010, In : Journal of Physical Chemistry C. 114, 12, p. 5661-5674 14 p.

    Research output: Contribution to journalArticle

    67 Scopus citations

    MD simulations of the dsRBP DGCR8 reveal correlated motions that may aid pri-miRNA binding

    Wostenberg, C., Noid, W. G. & Showalter, S. A., Jul 7 2010, In : Biophysical journal. 99, 1, p. 248-256 9 p.

    Research output: Contribution to journalArticle

    12 Scopus citations

    Recovering physical potentials from a model protein databank

    Mullinax, J. W. & Noid, W. G., Nov 16 2010, In : Proceedings of the National Academy of Sciences of the United States of America. 107, 46, p. 19867-19872 6 p.

    Research output: Contribution to journalArticle

    39 Scopus citations

    Reference state for the generalized Yvon-Born-Green theory: Application for coarse-grained model of hydrophobic hydration

    Mullinax, J. W. & Noid, W. G., Sep 28 2010, In : Journal of Chemical Physics. 133, 12, 124107.

    Research output: Contribution to journalArticle

    18 Scopus citations
    2009

    Effective force coarse-graining

    Wang, Y., Noid, W. G., Liu, P. & Voth, G. A., Mar 20 2009, In : Physical Chemistry Chemical Physics. 11, 12, p. 2002-2015 14 p.

    Research output: Contribution to journalArticle

    88 Scopus citations

    Extended ensemble approach for deriving transferable coarse-grained potentials

    Mullinax, J. W. & Noid, W. G., Sep 25 2009, In : Journal of Chemical Physics. 131, 10, 104110.

    Research output: Contribution to journalArticle

    78 Scopus citations

    Generalized Yvon-Born-Green Theory for Molecular Systems

    Mullinax, J. W. & Noid, W. G., Nov 6 2009, In : Physical Review Letters. 103, 19, 198104.

    Research output: Contribution to journalArticle

    64 Scopus citations

    The multiscale coarse-graining method. IV. Transferring coarse-grained potentials between temperatures

    Krishna, V., Noid, W. G. & Voth, G. A., Jul 24 2009, In : Journal of Chemical Physics. 131, 2, 024103.

    Research output: Contribution to journalArticle

    78 Scopus citations
    2008

    A systematic methodology for defining coarse-grained sites in large biomolecules

    Zhang, Z., Lu, L., Noid, W. G., Krishna, V., Pfaendtner, J. & Voth, G. A., Dec 1 2008, In : Biophysical journal. 95, 11, p. 5073-5083 11 p.

    Research output: Contribution to journalArticle

    105 Scopus citations

    Chapter 7 Multiscale Simulation of Membranes and Membrane Proteins: Connecting Molecular Interactions to Mesoscopic Behavior

    Ayton, G. S., Izvekov, S., Noid, W. G. & Voth, G. A., Jul 1 2008, Computational Modeling of Membrane Bilayers. Feller, S. (ed.). p. 181-225 45 p. (Current Topics in Membranes; vol. 60).

    Research output: Chapter in Book/Report/Conference proceedingChapter

    12 Scopus citations

    The multiscale coarse-graining method. I. A rigorous bridge between atomistic and coarse-grained models

    Noid, W. G., Chu, J. W., Ayton, G. S., Krishna, V., Izvekov, S., Voth, G. A., Das, A. & Andersen, H. C., Jul 7 2008, In : Journal of Chemical Physics. 128, 24, 244114.

    Research output: Contribution to journalArticle

    472 Scopus citations

    The multiscale coarse-graining method. II. Numerical implementation for coarse-grained molecular models

    Noid, W. G., Liu, P., Wang, Y., Chu, J. W., Ayton, G. S., Izvekov, S., Andersen, H. C. & Voth, G. A., 2008, In : Journal of Chemical Physics. 128, 24, 244115.

    Research output: Contribution to journalArticle

    259 Scopus citations
    2007

    Multiscale coarse-graining and structural correlations: Connections to liquid-state theory

    Noid, W. G., Chu, J. W., Ayton, G. S. & Voth, G. A., Apr 26 2007, In : Journal of Physical Chemistry B. 111, 16, p. 4116-4127 12 p.

    Research output: Contribution to journalArticle

    143 Scopus citations

    Multiscale modeling of biomolecular systems: in serial and in parallel

    Ayton, G. S., Noid, W. G. & Voth, G. A., Apr 1 2007, In : Current Opinion in Structural Biology. 17, 2, p. 192-198 7 p.

    Research output: Contribution to journalReview article

    326 Scopus citations

    Systematic coarse graining of biomolecular and soft-matter systems

    Ayton, G. S., Noid, W. G. & Voth, G. A., Nov 2007, In : MRS Bulletin. 32, 11, p. 929-934 6 p.

    Research output: Contribution to journalArticle

    29 Scopus citations
    2005

    Classical and quantum mechanical infrared echoes from resonantly coupled molecular vibrations

    Noid, W. G. & Loring, R. F., May 1 2005, In : Journal of Chemical Physics. 122, 17, 174507.

    Research output: Contribution to journalArticle

    13 Scopus citations

    Nonlinear spectroscopy of resonantly coupled classical mechanical molecular vibrations

    Noid, W. G. & Loring, R. F., Nov 1 2005, In : Molecular Physics. 103, 21-23 SPEC. ISS., p. 3071-3081 11 p.

    Research output: Contribution to journalArticle

    2 Scopus citations
    2004

    Interpreting nonlinear vibrational spectroscopy with the classical mechanical analogs of double-sided Feynman diagrams

    Noid, W. G. & Loring, R. F., Oct 15 2004, In : Journal of Chemical Physics. 121, 15, p. 7057-7069 13 p.

    Research output: Contribution to journalArticle

    15 Scopus citations

    Semiclassical calculation of the vibrational echo

    Noid, W. G., Ezra, G. S. & Loring, R. F., Jan 15 2004, In : Journal of Chemical Physics. 120, 3, p. 1491-1499 9 p.

    Research output: Contribution to journalArticle

    27 Scopus citations

    Vibrational echoes: Dephasing, rephasing, and the stability of classical trajectories

    Noid, W. G., Ezra, G. S. & Loring, R. F., May 27 2004, In : Journal of Physical Chemistry B. 108, 21, p. 6536-6543 8 p.

    Research output: Contribution to journalArticle

    29 Scopus citations