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Research Output 2004 2019

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Article
2019

A Genome-wide Association Study Identifying RAP1A as a Novel Susceptibility Gene for Crohn's Disease in Japanese Individuals

Kakuta, Y., Kawai, Y., Naito, T., Hirano, A., Umeno, J., Fuyuno, Y., Liu, Z., Li, D., Nakano, T., Izumiyama, Y., Ichikawa, R., Okamoto, D., Nagai, H., Matsumoto, S., Yamamoto, K., Yokoyama, N., Chiba, H., Shimoyama, Y., Onodera, M., Moroi, R. & 16 others, Kuroha, M., Kanazawa, Y., Kimura, T., Shiga, H., Endo, K., Negoro, K., Yasuda, J., Esaki, M., Tokunaga, K., Nakamura, M., Matsumoto, T., McGovern, D. P. B., Nagasaki, M., Kinouchi, Y., Shimosegawa, T. & Masamune, A., Jan 1 2019, In : Journal of Crohn's and Colitis. 13, 5, p. 648-658 11 p.

Research output: Contribution to journalArticle

Genome-Wide Association Study
Crohn Disease
Genes
Single Nucleotide Polymorphism
Odds Ratio
4 Citations (Scopus)

Differential YAP expression in glioma cells induces cell competition and promotes tumorigenesis

Liu, Z., Yee, P. P., Wei, Y., Liu, Z., Imamura, Y. & Li, W., Mar 1 2019, In : Journal of Cell Science. 132, 5, jcs225714.

Research output: Contribution to journalArticle

Open Access
Glioma
Carcinogenesis
Neoplasms
Glioblastoma
Growth
1 Citation (Scopus)

Extracellular vesicle-dependent effect of RNA-binding protein IGF2BP1 on melanoma metastasis

Ghoshal, A., Rodrigues, L. C., Gowda, C. P., Elcheva, I., Liu, Z., Abraham, T. & Spiegelman, V., May 23 2019, In : Oncogene. 38, 21, p. 4182-4196 15 p.

Research output: Contribution to journalArticle

Insulin-Like Growth Factor Binding Protein 2
RNA-Binding Proteins
Melanoma
Neoplasm Metastasis
Messenger RNA
2 Citations (Scopus)

Heterogeneous cancer-associated fibroblast population potentiates neuroendocrine differentiation and castrate resistance in a CD105-dependent manner

Kato, M., Placencio-Hickok, V. R., Madhav, A., Haldar, S., Tripathi, M., Billet, S., Mishra, R., Smith, B., Rohena-Rivera, K., Agarwal, P., Duong, F., Angara, B., Hickok, D., Liu, Z. & Bhowmick, N. A., Jan 31 2019, In : Oncogene. 38, 5, p. 716-730 15 p.

Research output: Contribution to journalArticle

Fibroblasts
Carcinoma
Androgens
Population
Neoplasms
1 Citation (Scopus)

Hyaluronan synthase 2-mediated hyaluronan production mediates Notch1 activation and liver fibrosis

Yang, Y. M., Noureddin, M., Liu, C., Ohashi, K., Kim, S. Y., Ramnath, D., Powell, E. E., Sweet, M. J., Roh, Y. S., Hsin, I. F., Deng, N., Liu, Z., Liang, J., Mena, E., Shouhed, D., Schwabe, R. F., Jiang, D., Lu, S. C., Noble, P. W. & Seki, E., Jun 12 2019, In : Science Translational Medicine. 11, 496, eaat9284.

Research output: Contribution to journalArticle

Hyaluronic Acid
Liver Cirrhosis
Hepatic Stellate Cells
Hymecromone
Toll-Like Receptor 4
3 Citations (Scopus)

PD-L1 on invasive fibroblasts drives fibrosis in a humanized model of idiopathic pulmonary fibrosis

Geng, Y., Liu, X., Liang, J., Habiel, D. M., Kulur, V., Coelho, A. L., Deng, N., Xie, T., Wang, Y., Liu, N., Huang, G., Kurkciyan, A., Liu, Z., Tang, J., Hogaboam, C. M., Jiang, D. & Noble, P. W., Mar 21 2019, In : JCI Insight. 4, 6, e125326.

Research output: Contribution to journalArticle

Open Access
Idiopathic Pulmonary Fibrosis
Fibrosis
Fibroblasts
Lung
RNA Sequence Analysis

Sparse support vector machines with L0 approximation for ultra-high dimensional omics data

Liu, Z., Elashoff, D. & Piantadosi, S., May 1 2019, In : Artificial Intelligence in Medicine. 96, p. 134-141 8 p.

Research output: Contribution to journalArticle

Support vector machines
Feature extraction
Sample Size
Gene expression
Computational complexity
2 Citations (Scopus)

The mitochondrial chaperone Prohibitin 1 negatively regulates interleukin-8 in human liver cancers

Yang, J. W., Murray, B., Barbier-Torres, L., Liu, T., Liu, Z., Yang, H., Fan, W., Wang, J., Li, Y., Seki, E., Mato, J. M. & Lu, S. C., Jan 1 2019, In : Journal of Biological Chemistry. 294, 6, p. 1984-1996 13 p.

Research output: Contribution to journalArticle

Liver Neoplasms
Interleukin-8
Liver
Tumors
Transcription Factor AP-1
2018
2 Citations (Scopus)

Antagonizing CD105 enhances radiation sensitivity in prostate cancer

Madhav, A., Andres, A., Duong, F., Mishra, R., Haldar, S., Liu, Z., Angara, B., Gottlieb, R., Zumsteg, Z. S. & Bhowmick, N. A., Aug 9 2018, In : Oncogene. 37, 32, p. 4385-4397 13 p.

Research output: Contribution to journalArticle

Radiation Tolerance
Prostatic Neoplasms
Radiation
DNA Repair
Sirtuin 1

Broken adaptive ridge regression and its asymptotic properties

Dai, L., Chen, K., Sun, Z., Liu, Z. & Li, G., Nov 1 2018, In : Journal of Multivariate Analysis. 168, p. 334-351 18 p.

Research output: Contribution to journalArticle

Ridge Regression
Ridge
Linear regression
Parameter estimation
Asymptotic Properties
6 Citations (Scopus)

Mechanisms of MAFG Dysregulation in Cholestatic Liver Injury and Development of Liver Cancer

Liu, T., Yang, H., Fan, W., Tu, J., Li, T. W. H., Wang, J., Shen, H., Yang, J. W., Xiong, T., Steggerda, J., Liu, Z., Noureddin, M., Maldonado, S. S., Annamalai, A., Seki, E., Mato, J. M. & Lu, S. C., Aug 2018, In : Gastroenterology. 155, 2, p. 557-571.e14

Research output: Contribution to journalArticle

Basic-Leucine Zipper Transcription Factors
Liver Neoplasms
Liver
Wounds and Injuries
Cholangiocarcinoma
8 Citations (Scopus)

Stromal epigenetic alterations drive metabolic and neuroendocrine prostate cancer reprogramming

Mishra, R., Haldar, S., Placencio, V., Madhav, A., Rohena-Rivera, K., Agarwal, P., Duong, F., Angara, B., Tripathi, M., Liu, Z., Gottlieb, R. A., Wagner, S., Posadas, E. M. & Bhowmick, N. A., Oct 1 2018, In : Journal of Clinical Investigation. 128, 10, p. 4472-4484 13 p.

Research output: Contribution to journalArticle

Epigenomics
Glutamine
Prostatic Neoplasms
Androgens
Heterografts
2017
7 Citations (Scopus)

Colonic Phenotypes Are Associated with Poorer Response to Anti-TNF Therapies in Patients with IBD

Yoon, S. M., Haritunians, T., Chhina, S., Liu, Z., Yang, S., Landers, C., Li, D., Ye, B. D., Shih, D., Vasiliauskas, E. A., Ippoliti, A., Rabizadeh, S., Targan, S. R., Melmed, G. Y. & McGovern, D. P. B., Aug 1 2017, In : Inflammatory bowel diseases. 23, 8, p. 1382-1393 12 p.

Research output: Contribution to journalArticle

Inflammatory Bowel Diseases
Tumor Necrosis Factor-alpha
Phenotype
Crohn Disease
Ulcerative Colitis
4 Citations (Scopus)

Genetic associations with adverse events from anti-tumor necrosis factor therapy in inflammatory bowel disease patients

Lew, D., Yoon, S. M., Yan, X., Robbins, L., Haritunians, T., Liu, Z., Li, D. & McGovern, D. P. B., Oct 28 2017, In : World journal of gastroenterology. 23, 40, p. 7265-7273 9 p.

Research output: Contribution to journalArticle

Inflammatory Bowel Diseases
Tumor Necrosis Factor-alpha
Single Nucleotide Polymorphism
Logistic Models
Serum Sickness
6 Citations (Scopus)

Genome-wide analysis suggests a differential microRNA signature associated with normal and diabetic human corneal limbus

Kulkarni, M., Leszczynska, A., Wei, G., Winkler, M. A., Tang, J., Funari, V. A., Deng, N., Liu, Z., Punj, V., Deng, S. X., Ljubimov, A. V. & Saghizadeh, M., Dec 1 2017, In : Scientific reports. 7, 1, 3448.

Research output: Contribution to journalArticle

Limbus Corneae
MicroRNAs
Cornea
Genome
Epithelial Cells
33 Citations (Scopus)

Genome-Wide Association Study Identifies African-Specific Susceptibility Loci in African Americans With Inflammatory Bowel Disease

Brant, S. R., Okou, D. T., Simpson, C. L., Cutler, D. J., Haritunians, T., Bradfield, J. P., Chopra, P., Prince, J., Begum, F., Kumar, A., Huang, C., Venkateswaran, S., Datta, L. W., Wei, Z., Thomas, K., Herrinton, L. J., Klapproth, J. M. A., Quiros, A. J., Seminerio, J., Liu, Z. & 41 others, Alexander, J. S., Baldassano, R. N., Dudley-Brown, S., Cross, R. K., Dassopoulos, T., Denson, L. A., Dhere, T. A., Dryden, G. W., Hanson, J. S., Hou, J. K., Hussain, S. Z., Hyams, J. S., Isaacs, K. L., Kader, H., Kappelman, M. D., Katz, J., Kellermayer, R., Kirschner, B. S., Kuemmerle, J. F., Kwon, J. H., Lazarev, M., Li, E., Mack, D., Mannon, P., Moulton, D. E., Newberry, R. D., Osuntokun, B. O., Patel, A. S., Saeed, S. A., Targan, S. R., Valentine, J. F., Wang, M. H., Zonca, M., Rioux, J. D., Duerr, R. H., Silverberg, M. S., Cho, J. H., Hakonarson, H., Zwick, M. E., McGovern, D. P. B. & Kugathasan, S., Jan 1 2017, In : Gastroenterology. 152, 1, p. 206-217.e2

Research output: Contribution to journalArticle

Genome-Wide Association Study
Inflammatory Bowel Diseases
African Americans
Ulcerative Colitis
Single Nucleotide Polymorphism
7 Citations (Scopus)

Human Pancreatic Acinar Cells: Proteomic Characterization, Physiologic Responses, and Organellar Disorders in ex Vivo Pancreatitis

Lugea, A., Waldron, R. T., Mareninova, O. A., Shalbueva, N., Deng, N., Su, H. Y., Thomas, D. D., Jones, E. K., Messenger, S. W., Yang, J., Hu, C., Gukovsky, I., Liu, Z., Groblewski, G. E., Gukovskaya, A. S., Gorelick, F. S. & Pandol, S. J., Dec 1 2017, In : American Journal of Pathology. 187, 12, p. 2726-2743 18 p.

Research output: Contribution to journalArticle

Acinar Cells
Pancreatitis
Proteomics
Carbachol
Rodentia
11 Citations (Scopus)

LRRK2 but not ATG16L1 is associated with Paneth cell defect in Japanese Crohn's disease patients

Liu, T. C., Naito, T., Liu, Z., VanDussen, K. L., Haritunians, T., Li, D., Endo, K., Kawai, Y., Nagasaki, M., Kinouchi, Y., McGovern, D. P., Shimosegawa, T., Kakuta, Y. & Stappenbeck, T. S., Mar 23 2017, In : JCI insight. 2, 6, p. e91917

Research output: Contribution to journalArticle

Open Access
Paneth Cells
Crohn Disease
Organized Financing
Autophagy
Phenotype
10 Citations (Scopus)

MicroRNA-29c prevents pulmonary fibrosis by regulating epithelial cell renewal and apoptosis

Xie, T., Liang, J., Geng, Y., Liu, N., Kurkciyan, A., Kulur, V., Leng, D., Deng, N., Liu, Z., Song, J., Chen, P., Noble, P. W. & Jiang, D., Dec 1 2017, In : American journal of respiratory cell and molecular biology. 57, 6, p. 721-732 12 p.

Research output: Contribution to journalArticle

Pulmonary Fibrosis
MicroRNAs
Epithelial Cells
Apoptosis
Lung Injury
1 Citation (Scopus)

Sparse generalized linear model with L 0 approximation for feature selection and prediction with big omics data

Liu, Z., Sun, F. & McGovern, D. P., Dec 19 2017, In : BioData Mining. 10, 1, 39.

Research output: Contribution to journalArticle

Generalized Linear Model
Feature Selection
Feature extraction
Linear Models
Data Mining
2016
22 Citations (Scopus)

A COL11A1-correlated pan-cancer gene signature of activated fibroblasts for the prioritization of therapeutic targets

Jia, D., Liu, Z., Deng, N., Tan, T. Z., Huang, R. Y. J., Taylor-Harding, B., Cheon, D. J., Lawrenson, K., Wiedemeyer, W. R., Walts, A. E., Karlan, B. Y. & Orsulic, S., Nov 28 2016, In : Cancer Letters. 382, 2, p. 203-214 12 p.

Research output: Contribution to journalArticle

Neoplasm Genes
Fibroblasts
Neoplasms
Therapeutics
Biomarkers
10 Citations (Scopus)
imidazole mustard
Variable Selection
Computational Biology
Penalty
Regression
10 Citations (Scopus)

FOXC1 is involved in ERα silencing by counteracting GATA3 binding and is implicated in endocrine resistance

Yu-Rice, Y., Jin, Y., Han, B., Qu, Y., Johnson, J., Watanabe, T., Cheng, L., Deng, N., Tanaka, H., Gao, B., Liu, Z., Sun, Z., Bose, S., Giuliano, A. E. & Cui, X., Oct 13 2016, In : Oncogene. 35, 41, p. 5400-5411 12 p.

Research output: Contribution to journalArticle

Protein Binding
Estrogen Receptors
Carrier Proteins
Breast Neoplasms
DNA-Binding Proteins
32 Citations (Scopus)

Human induced pluripotent stem cells differentiate into functional mesenchymal stem cells and repair bone defects

Sheyn, D., Ben-David, S., Shapiro, G., de Mel, S., Bez, M., Ornelas, L., Sahabian, A., Sareen, D., Da, X., Pelled, G., Tawackoli, W., Liu, Z., Gazit, D. & Gazit, Z., Nov 1 2016, In : Stem Cells Translational Medicine. 5, 11, p. 1447-1460 14 p.

Research output: Contribution to journalArticle

Induced Pluripotent Stem Cells
Mesenchymal Stromal Cells
Bone and Bones
Osteogenesis
Bone Regeneration
12 Citations (Scopus)

Interstitial Cystitis-Associated Urinary Metabolites Identified by Mass-Spectrometry Based Metabolomics Analysis

Kind, T., Cho, E., Park, T. D., Deng, N., Liu, Z., Lee, T., Fiehn, O. & Kim, J., Dec 15 2016, In : Scientific reports. 6, 39227.

Research output: Contribution to journalArticle

Interstitial Cystitis
Metabolomics
Mass Spectrometry
Urine
Discriminant Analysis

Nonparametric Regularized Regression for Phenotype-Associated Taxa Selection and Network Construction with Metagenomic Count Data

Guo, W., Liu, Z. & Ma, S., Nov 1 2016, In : Journal of Computational Biology. 23, 11, p. 877-890 14 p.

Research output: Contribution to journalArticle

Metagenomics
Count Data
Nonparametric Regression
Electric network analysis
Phenotype
11 Citations (Scopus)

Perianal Crohn's disease is associated with distal colonic disease, stricturing disease behavior, IBD-associated serologies and genetic variation in the JAK-STAT pathway

Kaur, M., Panikkath, D., Yan, X., Liu, Z., Berel, D., Li, D., Vasiliauskas, E. A., Ippoliti, A., Dubinsky, M., Shih, D. Q., Melmed, G. Y., Haritunians, T., Fleshner, P., Targan, S. R. & McGovern, D. P. B., Mar 9 2016, In : Inflammatory bowel diseases. 22, 4, p. 862-869 8 p.

Research output: Contribution to journalArticle

Colonic Diseases
Serology
Crohn Disease
Inflammatory Bowel Diseases
Antibodies
6 Citations (Scopus)

Sparse Inverse Covariance Estimation with L0 Penalty for Network Construction with Omics Data

Liu, Z., Lin, S., Deng, N., McGovern, D. P. B. & Piantadosi, S., Mar 1 2016, In : Journal of Computational Biology. 23, 3, p. 192-202 11 p.

Research output: Contribution to journalArticle

Covariance Estimation
Penalty
Genes
Gene
Structure Learning
2015
34 Citations (Scopus)

Characterization of Genetic Loci That Affect Susceptibility to Inflammatory Bowel Diseases in African Americans

Huang, C., Haritunians, T., Okou, D. T., Cutler, D. J., Zwick, M. E., Taylor, K. D., Datta, L. W., Maranville, J. C., Liu, Z., Ellis, S., Chopra, P., Alexander, J. S., Baldassano, R. N., Cross, R. K., Dassopoulos, T., Dhere, T. A., Duerr, R. H., Hanson, J. S., Hou, J. K., Hussain, S. Z. & 34 others, Isaacs, K. L., Kachelries, K. E., Kader, H., Kappelman, M. D., Katz, J., Kellermayer, R., Kirschner, B. S., Kuemmerle, J. F., Kumar, A., Kwon, J. H., Lazarev, M., Mannon, P., Moulton, D. E., Osuntokun, B. O., Patel, A., Rioux, J. D., Rotter, J. I., Saeed, S., Scherl, E. J., Silverberg, M. S., Silverman, A., Targan, S. R., Valentine, J. F., Wang, M. H., Simpson, C. L., Bridges, S. L., Kimberly, R. P., Rich, S. S., Cho, J. H., Di Rienzo, A., Kao, L. W. H., McGovern, D. P. B., Brant, S. R. & Kugathasan, S., Nov 1 2015, In : Gastroenterology. 149, 6, p. 1575-1586 12 p.

Research output: Contribution to journalArticle

Genetic Loci
Inflammatory Bowel Diseases
African Americans
Single Nucleotide Polymorphism
Ulcerative Colitis
56 Citations (Scopus)

FOXC1 Activates Smoothened-Independent Hedgehog Signaling in Basal-like Breast Cancer

Han, B., Qu, Y., Jin, Y., Yu, Y., Deng, N., Wawrowsky, K., Zhang, X., Li, N., Bose, S., Wang, Q., Sakkiah, S., Abrol, R., Jensen, T. W., Berman, B. P., Tanaka, H., Johnson, J., Gao, B., Hao, J., Liu, Z., Buttyan, R. & 4 others, Ray, P. S., Hung, M. C., Giuliano, A. E. & Cui, X., Nov 3 2015, In : Cell Reports. 13, 5, p. 1046-1058 13 p.

Research output: Contribution to journalArticle

Chemical activation
Breast Neoplasms
Oncology
Transcription
Stem cells
16 Citations (Scopus)

Inflammation and pyroptosis mediate muscle expansion in an interleukin-1β (IL-1β)-dependent manner

Haldar, S., Dru, C., Choudhury, D., Mishra, R., Fernandez, A., Biond, S., Liu, Z., Shimada, K., Arditi, M. & Bhowmick, N. A., Mar 6 2015, In : Journal of Biological Chemistry. 290, 10, p. 6574-6583 10 p.

Research output: Contribution to journalArticle

Interleukin-1
Muscle
Urinary Bladder
Inflammation
DNA Damage
9 Citations (Scopus)

Multilevel regularized regression for simultaneous taxa selection and network construction with metagenomic count data

Liu, Z., Sun, F., Braun, J., McGovern, D. P. B. & Piantadosi, S., Apr 1 2015, In : Bioinformatics. 31, 7, p. 1067-1074 8 p.

Research output: Contribution to journalArticle

Metagenomics
Count Data
Regression
Bacteria
Network Structure
1 Citation (Scopus)

Network construction and structure detection with metagenomic count data

Liu, Z., Lin, S. & Piantadosi, S., Dec 12 2015, In : BioData Mining. 8, 1, 72.

Research output: Contribution to journalArticle

Metagenomics
Count Data
Distance Measure
Network Structure
Sequencing
2 Citations (Scopus)

Network tuned multiple rank aggregation and applications to gene ranking

Wang, W., Zhou, X. J., Liu, Z. & Sun, F., Jan 21 2015, In : BMC Bioinformatics. 16, 1, S6.

Research output: Contribution to journalArticle

Rank Aggregation
Ranking
Agglomeration
Genes
Gene
19 Citations (Scopus)

Suboptimal cytoreduction in ovarian carcinoma is associated with molecular pathways characteristic of increased stromal activation

Liu, Z., Beach, J. A., Agadjanian, H., Jia, D., Aspuria, P. J., Karlan, B. Y. & Orsulic, S., Dec 1 2015, In : Gynecologic Oncology. 139, 3, p. 394-400 7 p.

Research output: Contribution to journalArticle

Carcinoma
Gene Regulatory Networks
Neoplasms
Biological Phenomena
Survival
2014
23 Citations (Scopus)

Down-Regulation of eIF4GII by miR-520c-3p Represses Diffuse Large B Cell Lymphoma Development

Mazan-Mamczarz, K., Zhao, X. F., Dai, B., Steinhardt, J. J., Peroutka, R. J., Berk, K. L., Landon, A. L., Sadowska, M., Zhang, Y., Lehrmann, E., Becker, K. G., Shaknovich, R., Liu, Z. & Gartenhaus, R. B., Jan 1 2014, In : PLoS genetics. 10, 1, e1004105.

Research output: Contribution to journalArticle

Lymphoma, Large B-Cell, Diffuse
senescence
lymphoma
tumor
translation (genetics)
104 Citations (Scopus)

Downregulation of miR-140 promotes cancer stem cell formation in basal-like early stage breast cancer

Li, Q., Yao, Y., Eades, G., Liu, Z., Zhang, Y. & Zhou, Q., May 15 2014, In : Oncogene. 33, 20, p. 2589-2600 12 p.

Research output: Contribution to journalArticle

Carcinoma, Intraductal, Noninfiltrating
Neoplastic Stem Cells
Down-Regulation
Breast Neoplasms
Stem Cells
19 Citations (Scopus)

Ebp1 activates podoplanin expression and contributes to oral tumorigenesis

Mei, Y., Zhang, P., Zuo, H., Clark, D., Xia, R., Li, J., Liu, Z. & Mao, L., Jul 17 2014, In : Oncogene. 33, 29, p. 3839-3850 12 p.

Research output: Contribution to journalArticle

Carrier Proteins
Carcinogenesis
Squamous Cell Carcinoma
Proteins
Up-Regulation
26 Citations (Scopus)

Small nucleolar RNA signatures of lung tumor-initiating cells

Mannoor, K., Shen, J., Liao, J., Liu, Z. & Jiang, F., May 6 2014, In : Molecular Cancer. 13, 1, 104.

Research output: Contribution to journalArticle

Small Nucleolar RNA
Neoplastic Stem Cells
Lung
Non-Small Cell Lung Carcinoma
Carcinogenesis
2013
26 Citations (Scopus)

Anti-HDGF targets cancer and cancer stromal stem cells resistant to chemotherapy

Zhao, J., Ma, M. Z., Ren, H., Liu, Z., Edelman, M. J., Pan, H. & Mao, L., Jul 1 2013, In : Clinical Cancer Research. 19, 13, p. 3567-3576 10 p.

Research output: Contribution to journalArticle

Neoplastic Stem Cells
Stromal Cells
Drug Therapy
Non-Small Cell Lung Carcinoma
Neoplasms
3 Citations (Scopus)

Class Prediction and Feature Selection with Linear Optimization for Metagenomic Count Data

Liu, Z., Chen, D., Sheng, L. & Liu, A. Y., Mar 26 2013, In : PloS one. 8, 3, e53253.

Research output: Contribution to journalArticle

Metagenomics
Feature extraction
prediction
Computational methods
Linear programming
33 Citations (Scopus)

Differential Response of the Cynomolgus Macaque Gut Microbiota to Shigella Infection

Seekatz, A. M., Panda, A., Rasko, D. A., Toapanta, F. R., Eloe-Fadrosh, E. A., Khan, A. Q., Liu, Z., Shipley, S. T., DeTolla, L. J., Sztein, M. B. & Fraser, C. M., Jun 5 2013, In : PloS one. 8, 6, e64212.

Research output: Contribution to journalArticle

Shigella
Macaca fascicularis
Macaca
intestinal microorganisms
Immunization
2012
120 Citations (Scopus)

Analysis of the gut microbiota in the old order amish and its relation to the metabolic syndrome

Zupancic, M. L., Cantarel, B. L., Liu, Z., Drabek, E. F., Ryan, K. A., Cirimotich, S., Jones, C., Knight, R., Walters, W. A., Knights, D., Mongodin, E. F., Horenstein, R. B., Mitchell, B. D., Steinle, N., Snitker, S., Shuldiner, A. R. & Fraser, C. M., Aug 15 2012, In : PloS one. 7, 8, e43052.

Research output: Contribution to journalArticle

Amish
metabolic syndrome
Electric network analysis
intestinal microorganisms
Bacteria
7 Citations (Scopus)

CDC25AQ110del: A Novel Cell Division Cycle 25A Isoform Aberrantly Expressed in Non-Small Cell Lung Cancer

Younis, R. H., Cao, W., Lin, R., Xia, R., Liu, Z., Edelman, M. J., Mei, Y., Mao, L. & Ren, H., Oct 5 2012, In : PLoS One. 7, 10, e46464.

Research output: Contribution to journalArticle

lung neoplasms
Non-Small Cell Lung Carcinoma
cell division
Cell Cycle
Protein Isoforms
6 Citations (Scopus)

Efficient feature selection and multiclass classification with integrated instance and model based learning

Liu, Z., Bensmail, H. & Tan, M., Jan 1 2012, In : Evolutionary Bioinformatics. 2012, 8, p. 197-205 9 p.

Research output: Contribution to journalArticle

Feature extraction
learning
Learning
Logistics
Medical applications
63 Citations (Scopus)

Microbial transformation from normal oral microbiota to acute endodontic infections

Hsiao, W. W. L., Li, K. L., Liu, Z., Jones, C., Fraser-Liggett, C. M. & Fouad, A. F., Jul 28 2012, In : BMC genomics. 13, 1, 345.

Research output: Contribution to journalArticle

Endodontics
Microbiota
Dental Pulp Cavity
Mouth
Periapical Abscess
36 Citations (Scopus)

MiR-27a Functions as a Tumor Suppressor in Acute Leukemia by Regulating 14-3-3θ

Scheibner, K. A., Teaboldt, B., Hauer, M. C., Chen, X., Cherukuri, S., Guo, Y., Kelley, S. M., Liu, Z., Baer, M. R., Heimfeld, S. & Civin, C. I., Dec 7 2012, In : PloS one. 7, 12, e50895.

Research output: Contribution to journalArticle

leukemia
Tumors
Leukemia
Cells
Apoptosis Regulatory Proteins
2011
26 Citations (Scopus)

ATM regulates a DNA damage response posttranscriptional RNA operon in lymphocytes

Mazan-Mamczarz, K., Hagner, P. R., Zhang, Y., Dai, B., Lehrmann, E., Becker, K. G., Keene, J. D., Gorospe, M., Liu, Z. & Gartenhaus, R. B., Feb 24 2011, In : Blood. 117, 8, p. 2441-2450 10 p.

Research output: Contribution to journalArticle

Ataxia Telangiectasia
Lymphocytes
Operon
DNA Damage
RNA
30 Citations (Scopus)

Sparse distance-based learning for simultaneous multiclass classification and feature selection of metagenomic data

Liu, Z., Hsiao, W., Cantarel, B. L., Drábek, E. F. & Fraser-Liggett, C., Dec 1 2011, In : Bioinformatics. 27, 23, p. 3242-3249 8 p., btr547.

Research output: Contribution to journalArticle

Distance Education
Metagenomics
Multi-class Classification
Feature Selection
Feature extraction
2010
158 Citations (Scopus)

Aldehyde dehydrogenase 1 A1-positive cell population is enriched in tumor-initiating cells and associated with progression of bladder cancer

Su, Y., Qiu, Q., Zhang, X., Jiang, Z., Leng, Q., Liu, Z., Stass, S. A. & Jiang, F., Feb 1 2010, In : Cancer Epidemiology Biomarkers and Prevention. 19, 2, p. 327-337 11 p.

Research output: Contribution to journalArticle

Neoplastic Stem Cells
Urinary Bladder Neoplasms
Population
Neoplasms
Urinary Bladder