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2016
41 Citations (Scopus)

Tree of life for the genera of Chinese vascular plants

China Phylogeny Consortium, Jul 1 2016, In : Journal of Systematics and Evolution. 54, 4, p. 277-306 30 p.

Research output: Contribution to journalArticle

vascular plant
vascular plants
phylogeny
angiosperm
Angiospermae
4 Citations (Scopus)
Brassicaceae
angiosperm
Angiospermae
phylogeny
case studies
2015
15 Citations (Scopus)

Analysis of Arabidopsis floral transcriptome: Detection of new florally expressed genes and expansion of Brassicaceae-specific gene families

Zhang, L., Wang, L., Yang, Y., Cui, J., Chang, F., Wang, Y. & Ma, H., Jan 20 2015, In : Frontiers in Plant Science. 5, JAN, p. 1-9 9 p., 802.

Research output: Contribution to journalArticle

Brassicaceae
transcriptome
Arabidopsis
flowering
flowers
7 Citations (Scopus)

Arabidopsis cell division cycle 20.1 is required for normal meiotic spindle assembly and chromosome segregation

Niu, B., Wang, L., Zhang, L., Ren, D., Ren, R., Copenhaver, G. P., Ma, H. & Wang, Y., Dec 1 2015, In : Plant Cell. 27, 12, p. 3367-3382 16 p.

Research output: Contribution to journalArticle

Chromosome Segregation
Spindle Apparatus
chromosome segregation
M Phase Cell Cycle Checkpoints
Arabidopsis
12 Citations (Scopus)

Arabidopsis PARG1 is the key factor promoting cell survival among the enzymes regulating post-translational poly(ADP-ribosyl)ation

Zhang, H., Gu, Z., Wu, Q., Yang, L., Liu, C., Ma, H., Xia, Y. & Ge, X., Oct 30 2015, In : Scientific reports. 5, 15892.

Research output: Contribution to journalArticle

DNA repair
ribose
cell viability
NAD ADP-ribosyltransferase
Arabidopsis
58 Citations (Scopus)

Arabidopsis TOE proteins convey a photoperiodic signal to antagonize CONSTANS and regulate flowering time

Zhang, B., Wang, L., Zeng, L., Zhang, C. & Ma, H., May 1 2015, In : Genes and Development. 29, 9, p. 975-987 13 p.

Research output: Contribution to journalArticle

Arabidopsis Proteins
Proteins
Arabidopsis
Proteolysis
Binding Sites
4 Citations (Scopus)

Chromatin and epigenetics

Amtmann, A., Ma, H. & Wagner, D., Aug 1 2015, In : Plant physiology. 168, 4, p. 1185-1188 4 p.

Research output: Contribution to journalEditorial

Genetic Epigenesis
Epigenomics
epigenetics
Chromatin
chromatin
10 Citations (Scopus)

Differential evolution of members of the rhomboid gene family with conservative and divergent patterns

Li, Q., Zhang, N., Zhang, L. & Ma, H., Apr 1 2015, In : New Phytologist. 206, 1, p. 368-380 13 p.

Research output: Contribution to journalArticle

Genes
genes
Duplicate Genes
Brassicaceae
duplicate genes
22 Citations (Scopus)

Expansion and functional divergence of Jumonji C-containing histone demethylases: Significance of duplications in ancestral angiosperms and vertebrates

Qian, S., Wang, Y., Ma, H. & Zhang, L., Aug 1 2015, In : Plant physiology. 168, 4, p. 1321-1337 17 p.

Research output: Contribution to journalArticle

Histone Demethylases
Angiosperms
histones
Vertebrates
Angiospermae
9 Citations (Scopus)

Formation of interference-sensitive meiotic cross-overs requires sufficient DNA leading-strand elongation

Huang, J., Cheng, Z., Wang, C., Hong, Y., Su, H., Wang, J., Copenhaver, G. P., Ma, H. & Wang, Y., Oct 6 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 40, p. 12534-12539 6 p.

Research output: Contribution to journalArticle

Genetic Recombination
DNA
Meiosis
DNA-Directed DNA Polymerase
Eukaryota
39 Citations (Scopus)

OsNAC2 encoding a NAC transcription factor that affects plant height through mediating the gibberellic acid pathway in rice

Chen, X., Lu, S., Wang, Y., Zhang, X., Lv, B., Luo, L., Xi, D., Shen, J., Ma, H. & Ming, F., Apr 1 2015, In : Plant Journal. 82, 2, p. 302-314 13 p.

Research output: Contribution to journalArticle

gibberellic acid
Transcription Factors
transcription factors
rice
flowering
24 Citations (Scopus)

Proteomic and phosphoproteomic analyses reveal extensive phosphorylation of regulatory proteins in developing rice anthers

Ye, J., Zhang, Z., Long, H., Zhang, Z., Hong, Y., Zhang, X., You, C., Liang, W., Ma, H. & Lu, P., Nov 2015, In : Plant Journal. 84, 3, p. 527-544 18 p.

Research output: Contribution to journalArticle

regulatory proteins
Proteomics
proteomics
anthers
phosphorylation
10 Citations (Scopus)

Step-wise and lineage-specific diversification of plant RNA polymerase genes and origin of the largest plant-specific subunits

Wang, Y. & Ma, H., Sep 1 2015, In : New Phytologist. 207, 4, p. 1198-1212 15 p.

Research output: Contribution to journalArticle

Plant RNA
DNA-Directed RNA Polymerases
DNA-directed RNA polymerase
Embryophyta
embryophytes
56 Citations (Scopus)

The DYT1-interacting proteins bHLH010, bHLH089 and bHLH091 are redundantly required for Arabidopsis anther development and transcriptome

Zhu, E., You, C., Wang, S., Cui, J., Niu, B., Wang, Y., Qi, J., Ma, H. & Chang, F., Sep 1 2015, In : Plant Journal. 83, 6, p. 976-990 15 p.

Research output: Contribution to journalArticle

Transcriptome
Arabidopsis
transcriptome
anthers
Basic Helix-Loop-Helix Transcription Factors
35 Citations (Scopus)

Whole-genome DNA methylation patterns and complex associations with gene structure and expression during flower development in Arabidopsis

Yang, H., Chang, F., You, C., Cui, J., Zhu, G., Wang, L., Zheng, Y., Qi, J. & Ma, H., Jan 1 2015, In : Plant Journal. 81, 2, p. 268-281 14 p.

Research output: Contribution to journalArticle

DNA methylation
DNA Methylation
Arabidopsis
Genome
methylation
2014
22 Citations (Scopus)

Alternative splicing during Arabidopsis flower development results in constitutive and stage-regulated isoforms

Wang, H., You, C., Chang, F., Wang, Y., Wang, L., Qi, J. & Ma, H., Jan 1 2014, In : Frontiers in Genetics. 5, FEB, Article 25.

Research output: Contribution to journalArticle

Alternative Splicing
Arabidopsis
Protein Isoforms
Exons
Recombinant DNA
3 Citations (Scopus)

Arabidopsis PTD Is Required for Type I Crossover Formation and Affects Recombination Frequency in Two Different Chromosomal Regions

Lu, P., Wijeratne, A. J., Wang, Z., Copenhaver, G. P. & Ma, H., Mar 20 2014, In : Journal of Genetics and Genomics. 41, 3, p. 165-175 11 p.

Research output: Contribution to journalArticle

Meiosis
Arabidopsis
Genetic Recombination
Chromosomes
Chromosome Segregation
23 Citations (Scopus)

CbCBF from Capsella bursa-pastoris enhances cold tolerance and restrains growth in Nicotiana tabacum by antagonizing with gibberellin and affecting cell cycle signaling

Zhou, M., Xu, M., Wu, L., Shen, C., Ma, H. & Lin, J., Jun 2014, In : Plant molecular biology. 85, 3, p. 259-275 17 p.

Research output: Contribution to journalArticle

Capsella
Capsella bursa-pastoris
Gibberellins
cold tolerance
gibberellins
4 Citations (Scopus)

Cell biological analyses of anther morphogenesis and pollen viability in arabidopsis and rice

Chang, F., Zhang, Z., Jin, Y. & Ma, H., 2014, Flower Development: Methods and Protocols. Humana Press Inc., p. 203-216 14 p. (Methods in Molecular Biology; vol. 1110).

Research output: Chapter in Book/Report/Conference proceedingChapter

Pollen
Morphogenesis
Arabidopsis
Microdissection
In Situ Nick-End Labeling

Cell biological analyses of anther morphogenesis and pollen viability in arabidopsis and rice

Chang, F., Zhang, Z., Jin, Y. & Ma, H., Jan 1 2014, Methods in Molecular Biology. p. 203-216 14 p. (Methods in Molecular Biology; vol. 1110).

Research output: Chapter in Book/Report/Conference proceedingChapter

Pollen
Morphogenesis
Arabidopsis
Microdissection
In Situ Nick-End Labeling
30 Citations (Scopus)

Detection of genomic variations and DNA polymorphisms and impact on analysis of meiotic recombination and genetic mapping

Qi, J., Chen, Y., Copenhaver, G. P. & Ma, H., Jul 8 2014, In : Proceedings of the National Academy of Sciences of the United States of America. 111, 27, p. 10007-10012 6 p.

Research output: Contribution to journalArticle

Genetic Recombination
Genome
Nucleic Acid Repetitive Sequences
DNA
Sequence Homology
14 Citations (Scopus)

Flower development: Open questions and future directions

Wellmer, F., Bowman, J. L., Davies, B., Ferrándiz, C., Fletcher, J. C., Franks, R. G., Graciet, E., Gregis, V., Ito, T., Jack, T. P., Jiao, Y., Kater, M. M., Ma, H., Meyerowitz, E. M., Prunet, N. & Riechmann, J. L., 2014, Flower Development: Methods and Protocols. Humana Press Inc., p. 103-124 22 p. (Methods in Molecular Biology; vol. 1110).

Research output: Chapter in Book/Report/Conference proceedingChapter

Angiosperms
Meristem
Regulator Genes
Molecular Biology
Direction compound
1 Citation (Scopus)

Meiobase: A comprehensive database for meiosis

Li, H., Meng, F., Guo, C., Wang, Y., Xie, X., Zhu, T., Zhou, S., Ma, H., Shan, H. & Kong, H., Dec 16 2014, In : Frontiers in Plant Science. 5, DEC, 728.

Research output: Contribution to journalArticle

meiosis
user interface
sexual reproduction
cell biology
eukaryotic cells
2 Citations (Scopus)

Meiosis: Recent Progress and New Opportunities

Ma, H., Cooke, H. J. & Shi, Q., Mar 20 2014, In : Journal of Genetics and Genomics. 41, 3, p. 83-85 3 p.

Research output: Contribution to journalEditorial

Non Histone Chromosomal Proteins
Cruciform DNA
Cell Cycle Proteins
Meiosis
18 Citations (Scopus)

Moderate drought causes dramatic floral transcriptomic reprogramming to ensure successful reproductive development in Arabidopsis

Ma, X., Sukiran, N. L., Ma, H. & Su, Z., Jun 13 2014, In : BMC plant biology. 14, 1, 164.

Research output: Contribution to journalArticle

transcriptomics
drought
Arabidopsis
genes
transcriptome
10 Citations (Scopus)

Molecular cell biology of male meiotic chromosomes and isolation of male meiocytes in Arabidopsis thaliana

Wang, Y., Cheng, Z., Lu, P., Timofejeva, L. & Ma, H., 2014, Flower Development: Methods and Protocols. Humana Press Inc., p. 217-230 14 p. (Methods in Molecular Biology; vol. 1110).

Research output: Chapter in Book/Report/Conference proceedingChapter

Meiosis
Arabidopsis
Cell Biology
Molecular Biology
Chromosomes

Molecular cell biology of male meiotic chromosomes and isolation of male meiocytes in Arabidopsis thaliana

Wang, Y., Cheng, Z., Lu, P., Timofejeva, L. & Ma, H., 2014, Methods in Molecular Biology. Vol. 1110. p. 217-230 14 p. (Methods in Molecular Biology; vol. 1110).

Research output: Chapter in Book/Report/Conference proceedingChapter

Meiosis
Arabidopsis
Cell Biology
Molecular Biology
Chromosomes
170 Citations (Scopus)

Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times

Zeng, L., Zhang, Q., Sun, R., Kong, H., Zhang, N. & Ma, H., 2014, In : Nature communications. 5, 4956.

Research output: Contribution to journalArticle

angiosperms
Angiosperms
Phylogeny
genes
divergence
80 Citations (Scopus)

RNA-seq analyses of multiple meristems of soybean: Novel and alternative transcripts, evolutionary and functional implications

Wang, L., Cao, C., Ma, Q., Zeng, Q., Wang, H., Cheng, Z., Zhu, G., Qi, J., Ma, H., Nian, H. & Wang, Y., Jun 17 2014, In : BMC plant biology. 14, 1, 169.

Research output: Contribution to journalArticle

meristems
RNA
soybeans
genes
alternative splicing
36 Citations (Scopus)

The arabidopsis CALLOSE DEFECTIVE MICROSPORE1 gene is required for male fertility through regulating callose metabolism during microsporogenesis

Lu, P., Chai, M., Yang, J., Ning, G., Wang, G. & Ma, H., Apr 1 2014, In : Plant physiology. 164, 4, p. 1893-1904 12 p.

Research output: Contribution to journalArticle

Plant Gametogenesis
microsporogenesis
callose
male fertility
Arabidopsis
22 Citations (Scopus)

The Arabidopsis RAD51 paralogs RAD51B, RAD51D and XRCC2 play partially redundant roles in somatic DNA repair and gene regulation

Wang, Y., Xiao, R., Wang, H., Cheng, Z., Li, W., Zhu, G., Wang, Y. & Ma, H., Jan 1 2014, In : New Phytologist. 201, 1, p. 292-304 13 p.

Research output: Contribution to journalArticle

DNA repair
Arabidopsis
DNA Repair
Bleomycin
mutants
86 Citations (Scopus)

The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway

Chen, X., Wang, Y., Lv, B., Li, J., Luo, L., Lu, S., Zhang, X., Ma, H. & Ming, F., Jan 1 2014, In : Plant and Cell Physiology. 55, 3, p. 604-619 16 p.

Research output: Contribution to journalArticle

abiotic stress
Droughts
stress response
Transcription Factors
transcription factors
2013
11 Citations (Scopus)

A battle between genomes in plant male fertility

Ma, H., May 1 2013, In : Nature Genetics. 45, 5, p. 472-473 2 p.

Research output: Contribution to journalShort survey

Plant Genome
Fertility
Male Infertility
Nuclear Proteins
Genes
65 Citations (Scopus)

AtPRK2 promotes ROP1 activation via RopGEFs in the control of polarized pollen tube growth

Chang, F., Gu, Y., Ma, H. & Yang, Z., Jul 2013, In : Molecular plant. 6, 4, p. 1187-1201 15 p.

Research output: Contribution to journalArticle

Pollen Tube
pollen germination
Pollen
pollen tubes
phosphorylation
15 Citations (Scopus)

Characterization of the basal angiosperm Aristolochia fimbriata: A potential experimental system for genetic studies

Bliss, B. J., Wanke, S., Barakat, A., Ayyampalayam, S., Wickett, N., Wall, P. K., Jiao, Y., Landherr, L., Ralph, P. E., Hu, Y., Neinhuis, C., Leebens-Mack, J., Arumuganathan, K., Clifton, S. W., Maximova, S. N., Ma, H. & dePamphilis, C. W., Jan 24 2013, In : BMC plant biology. 13, 1, 13.

Research output: Contribution to journalArticle

Aristolochia
Angiospermae
life cycle (organisms)
Aristolochiaceae
plant-insect relations
36 Citations (Scopus)

Deep mRNA Sequencing Analysis to Capture the Transcriptome Landscape of Zebrafish Embryos and Larvae

Yang, H., Zhou, Y., Gu, J., Xie, S., Xu, Y., Zhu, G., Wang, L., Huang, J., Ma, H. & Yao, J., May 20 2013, In : PloS one. 8, 5, e64058.

Research output: Contribution to journalArticle

High-Throughput Nucleotide Sequencing
Zebrafish
Danio rerio
Transcriptome
transcriptome
76 Citations (Scopus)

Flower development under drought stress: Morphological and transcriptomic analyses reveal acute responses and long-term acclimation in Arabidopsis

Su, Z., Ma, X., Guo, H., Sukiran, N. L., Guo, B., Assmann, S. M. & Ma, H., Oct 1 2013, In : Plant Cell. 25, 10, p. 3785-3807 23 p.

Research output: Contribution to journalArticle

Acclimatization
Droughts
transcriptomics
Arabidopsis
acclimation
14 Citations (Scopus)

Reevaluation of the evolutionary events within recA/RAD51 phylogeny

Chintapalli, S. V., Bhardwaj, G., Babu, J., Hadjiyianni, L., Hong, Y., Todd, G. K., Boosalis, C. A., Zhang, Z., Zhou, X., Ma, H., Anishkin, A., van Rossum, D. B. & Patterson, R. L., Apr 10 2013, In : BMC genomics. 14, 1, 240.

Research output: Contribution to journalArticle

Phylogeny
Eukaryota
Rec A Recombinases
Recombinational DNA Repair
Recombinases
39 Citations (Scopus)

Rice male development under drought stress: Phenotypic changes and stage-dependent transcriptomic reprogramming

Jin, Y., Yang, H., Wei, Z., Ma, H. & Ge, X., Sep 2013, In : Molecular plant. 6, 5, p. 1630-1645 16 p.

Research output: Contribution to journalArticle

Droughts
transcriptomics
water stress
drought
rice
364 Citations (Scopus)

The Amborella genome and the evolution of flowering plants

DePamphilis, C. W., Palmer, J. D., Rounsley, S., Sankoff, D., Schuster, S. C., Ammiraju, J. S. S., Barbazuk, W. B., Chamala, S., Chanderbali, A. S., Determann, R., Hong, M., Ralph, P., Talag, J., Tomsho, L., Walts, B., Wanke, S., Wing, R. A., Chang, T. H., Lan, T., Soltis, D. E. & 57 others, Arikit, S., Axtell, M. J., Ayyampalayam, S., Burnette, J. M., De Paoli, E., Farrell, N. P., Harkess, A., Jiao, Y., Leebens-Mack, J., Liu, K., Mei, W., Meyers, B. C., Shahid, S., Wafula, E., Wessler, S. R., Zhai, J., Zhang, X., Albert, V. A., Carretero-Paulet, L., Lyons, E., Tang, H., Zheng, C., Altman, N. S., Chen, F., Chen, J. Q., Chiang, V., Der, J. P., Fogliani, B., Guo, C., Harholt, J., Job, C., Job, D., Kim, S., Kong, H., Li, G., Li, N., Liu, J., Park, J., Qi, X., Rajjou, L., Burtet-Sarramegna, V., Sederoff, R., Sun, Y. H., Ulvskov, P., Villegente, M., Xue, J. Y., Yeh, T. F., Yu, X., Acosta, J. J., Bruenn, R. A., De Kochko, A., Herrera-Estrella, L. R., Ibarra-Laclette, E., Kirst, M., Pissis, S. P., Poncet, V. & Soltis, P. S., Jan 1 2013, In : Science. 342, 6165, 1241089.

Research output: Contribution to journalArticle

Angiosperms
Genome
New Caledonia
Metagenomics
DNA Transposable Elements
41 Citations (Scopus)

The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages

Guo, C., Ge, X. & Ma, H., Jun 1 2013, In : Plant molecular biology. 82, 3, p. 239-253 15 p.

Research output: Contribution to journalArticle

Droughts
drought tolerance
Oryza sativa
drought
rice
2012
18 Citations (Scopus)
transcriptome
anthers
Arabidopsis
microspores
genes
75 Citations (Scopus)

Analysis of Arabidopsis genome-wide variations before and after meiosis and meiotic recombination by resequencing Landsberg erecta and all four products of a single meiosis

Lu, P., Han, X., Qi, J., Yang, J., Wijeratne, A. J., Li, T. & Ma, H., Mar 1 2012, In : Genome research. 22, 3, p. 508-518 11 p.

Research output: Contribution to journalArticle

Gene Conversion
Meiosis
Arabidopsis
Genetic Recombination
Genome
33 Citations (Scopus)

Complex evolutionary history and diverse domain organization of SET proteins suggest divergent regulatory interactions

Zhang, L. & Ma, H., Jul 1 2012, In : New Phytologist. 195, 1, p. 248-263 16 p.

Research output: Contribution to journalArticle

Histone Code
History
Genomic Segmental Duplications
history
Gene Duplication
19 Citations (Scopus)

Expansion and diversification of the SET domain gene family following whole-genome duplications in Populus trichocarpa

Lei, L., Zhou, S. L., Ma, H. & Zhang, L. S., Apr 16 2012, In : BMC Evolutionary Biology. 12, 1, 51.

Research output: Contribution to journalArticle

Populus balsamifera subsp. trichocarpa
genome
gene
Populus
genes
111 Citations (Scopus)

Highly conserved low-copy nuclear genes as effective markers for phylogenetic analyses in angiosperms

Zhang, N., Zeng, L., Shan, H. & Ma, H., Sep 1 2012, In : New Phytologist. 195, 4, p. 923-937 15 p.

Research output: Contribution to journalArticle

Angiosperms
Angiospermae
Phylogeny
phylogeny
Genes
22 Citations (Scopus)

Paternal RLIM/Rnf12 is a survival factor for milk-producing alveolar cells

Jiao, B., Ma, H., Shokhirev, M. N., Drung, A., Yang, Q., Shin, J., Lu, S., Byron, M., Kalantry, S., Mercurio, A. M., Lawrence, J. B., Hoffmann, A. & Bach, I., Apr 27 2012, In : Cell. 149, 3, p. 630-641 12 p.

Research output: Contribution to journalArticle

Alveolar Epithelial Cells
X Chromosome Inactivation
Chromosomes
Milk
Alleles
68 Citations (Scopus)

Regulation of the Arabidopsis anther transcriptome by DYT1 for pollen development

Feng, B., Lu, D., Ma, X., Peng, Y., Sun, Y., Ning, G. & Ma, H., Nov 1 2012, In : Plant Journal. 72, 4, p. 612-624 13 p.

Research output: Contribution to journalArticle

Pollen
Transcriptome
Arabidopsis
transcriptome
anthers
26 Citations (Scopus)

SKP1 is involved in abscisic acid signalling to regulate seed germination, stomatal opening and root growth in Arabidopsis thaliana

Li, C., Liu, Z., Zhang, Q., Wang, R., Xiao, L., Ma, H., Chong, K. & Xu, Y., May 1 2012, In : Plant, Cell and Environment. 35, 5, p. 952-965 14 p.

Research output: Contribution to journalArticle

Abscisic Acid
Germination
Arabidopsis
abscisic acid
root growth
20 Citations (Scopus)

The Arabidopsis thaliana DSB formation (AtDFO) gene is required for meiotic double-strand break formation

Zhang, C., Song, Y., Cheng, Z. H., Wang, Y. X., Zhu, J., Ma, H., Xu, L. & Yang, Z. N., Oct 1 2012, In : Plant Journal. 72, 2, p. 271-281 11 p.

Research output: Contribution to journalArticle

Arabidopsis
Arabidopsis thaliana
mutants
Genes
genes