A five-gene phylogeny of Pezizomycotina

Joseph W. Spatafora, Gi Ho Sung, Desiree Johnson, Cedar Hesse, Benjamin O'Rourke, Maryna Serdani, Robert Spotts, François Lutzoni, Valérie Hofstetter, Jolanta Miadlikowska, Valérie Reeb, Cécile Gueidan, Emily Fraker, Thorsten Lumbsch, Robert Lücking, Imke Schmitt, Kentaro Hosaka, André Aptroot, Claude Roux, Andrew N. MillerDavid M. Geiser, Josef Hafellner, Geir Hestmark, A. Elizabeth Arnold, Burkhard Büdel, Alexandra Rauhut, David Hewitt, Wendy A. Untereiner, Mariette S. Cole, Christoph Scheidegger, Matthias Schultz, Harrie Sipman, Conrad L. Schoch

Research output: Contribution to journalArticle

219 Citations (Scopus)

Abstract

Pezizomycotina is the largest subphylum of Ascomycota and includes the vast majority of filamentous, ascoma-producing species. Here we report the results fromweighted parsimony, maximum likelihood and Bayesian phylogenetic analyses of five nuclear loci (SSU rDNA, LSU rDNA, RPB1, RPB2 and EF-1α) from 191 taxa. Nine of the 10 Pezizomycotina classes currently recognized were represented in the sampling. These data strongly supported the monophyly of Pezizomycotina, Arthoniomycetes, Eurotiomycetes, Orbiliomycetes and Sordariomycetes. Pezizomycetes and Dothideomycetes also were resolved as monophyletic but not strongly supported by the data. Lecanoromycetes was resolved as paraphyletic in parsimony analyses but monophyletic in maximum likelihood and Bayesian analyses. Leotiomycetes was polyphyletic due to exclusion of Geoglossaceae. The two most basal classes of Pezizomycotina were Orbiliomycetes and Pezizomycetes, both of which comprise species that produce apothecial ascomata. The seven remaining classes formed a monophyletic group that corresponds to Leotiomyceta. Within Leotiomyceta, the supraclass clades of Leotiomycetes s.s. plus Sordariomycetes and Arthoniomycetes plus Dothideomycetes were resolved with moderate support.

Original languageEnglish (US)
Pages (from-to)1018-1028
Number of pages11
JournalMycologia
Volume98
Issue number6
DOIs
StatePublished - Nov 1 2006

Fingerprint

Pezizomycotina
Bayes Theorem
Phylogeny
Ribosomal DNA
Orbiliomycetes
Arthoniomycetes
Pezizomycetes
phylogeny
Leotiomycetes
Sordariomycetes
Dothideomycetes
Peptide Elongation Factor 1
Ascomycota
gene
Genes
Geoglossaceae
Eurotiomycetes
Lecanoromycetes
genes
phylogenetics

All Science Journal Classification (ASJC) codes

  • Ecology, Evolution, Behavior and Systematics
  • Physiology
  • Molecular Biology
  • Genetics
  • Cell Biology

Cite this

Spatafora, J. W., Sung, G. H., Johnson, D., Hesse, C., O'Rourke, B., Serdani, M., ... Schoch, C. L. (2006). A five-gene phylogeny of Pezizomycotina. Mycologia, 98(6), 1018-1028. https://doi.org/10.3852/mycologia.98.6.1018
Spatafora, Joseph W. ; Sung, Gi Ho ; Johnson, Desiree ; Hesse, Cedar ; O'Rourke, Benjamin ; Serdani, Maryna ; Spotts, Robert ; Lutzoni, François ; Hofstetter, Valérie ; Miadlikowska, Jolanta ; Reeb, Valérie ; Gueidan, Cécile ; Fraker, Emily ; Lumbsch, Thorsten ; Lücking, Robert ; Schmitt, Imke ; Hosaka, Kentaro ; Aptroot, André ; Roux, Claude ; Miller, Andrew N. ; Geiser, David M. ; Hafellner, Josef ; Hestmark, Geir ; Arnold, A. Elizabeth ; Büdel, Burkhard ; Rauhut, Alexandra ; Hewitt, David ; Untereiner, Wendy A. ; Cole, Mariette S. ; Scheidegger, Christoph ; Schultz, Matthias ; Sipman, Harrie ; Schoch, Conrad L. / A five-gene phylogeny of Pezizomycotina. In: Mycologia. 2006 ; Vol. 98, No. 6. pp. 1018-1028.
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Spatafora, JW, Sung, GH, Johnson, D, Hesse, C, O'Rourke, B, Serdani, M, Spotts, R, Lutzoni, F, Hofstetter, V, Miadlikowska, J, Reeb, V, Gueidan, C, Fraker, E, Lumbsch, T, Lücking, R, Schmitt, I, Hosaka, K, Aptroot, A, Roux, C, Miller, AN, Geiser, DM, Hafellner, J, Hestmark, G, Arnold, AE, Büdel, B, Rauhut, A, Hewitt, D, Untereiner, WA, Cole, MS, Scheidegger, C, Schultz, M, Sipman, H & Schoch, CL 2006, 'A five-gene phylogeny of Pezizomycotina', Mycologia, vol. 98, no. 6, pp. 1018-1028. https://doi.org/10.3852/mycologia.98.6.1018

A five-gene phylogeny of Pezizomycotina. / Spatafora, Joseph W.; Sung, Gi Ho; Johnson, Desiree; Hesse, Cedar; O'Rourke, Benjamin; Serdani, Maryna; Spotts, Robert; Lutzoni, François; Hofstetter, Valérie; Miadlikowska, Jolanta; Reeb, Valérie; Gueidan, Cécile; Fraker, Emily; Lumbsch, Thorsten; Lücking, Robert; Schmitt, Imke; Hosaka, Kentaro; Aptroot, André; Roux, Claude; Miller, Andrew N.; Geiser, David M.; Hafellner, Josef; Hestmark, Geir; Arnold, A. Elizabeth; Büdel, Burkhard; Rauhut, Alexandra; Hewitt, David; Untereiner, Wendy A.; Cole, Mariette S.; Scheidegger, Christoph; Schultz, Matthias; Sipman, Harrie; Schoch, Conrad L.

In: Mycologia, Vol. 98, No. 6, 01.11.2006, p. 1018-1028.

Research output: Contribution to journalArticle

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AU - Spatafora, Joseph W.

AU - Sung, Gi Ho

AU - Johnson, Desiree

AU - Hesse, Cedar

AU - O'Rourke, Benjamin

AU - Serdani, Maryna

AU - Spotts, Robert

AU - Lutzoni, François

AU - Hofstetter, Valérie

AU - Miadlikowska, Jolanta

AU - Reeb, Valérie

AU - Gueidan, Cécile

AU - Fraker, Emily

AU - Lumbsch, Thorsten

AU - Lücking, Robert

AU - Schmitt, Imke

AU - Hosaka, Kentaro

AU - Aptroot, André

AU - Roux, Claude

AU - Miller, Andrew N.

AU - Geiser, David M.

AU - Hafellner, Josef

AU - Hestmark, Geir

AU - Arnold, A. Elizabeth

AU - Büdel, Burkhard

AU - Rauhut, Alexandra

AU - Hewitt, David

AU - Untereiner, Wendy A.

AU - Cole, Mariette S.

AU - Scheidegger, Christoph

AU - Schultz, Matthias

AU - Sipman, Harrie

AU - Schoch, Conrad L.

PY - 2006/11/1

Y1 - 2006/11/1

N2 - Pezizomycotina is the largest subphylum of Ascomycota and includes the vast majority of filamentous, ascoma-producing species. Here we report the results fromweighted parsimony, maximum likelihood and Bayesian phylogenetic analyses of five nuclear loci (SSU rDNA, LSU rDNA, RPB1, RPB2 and EF-1α) from 191 taxa. Nine of the 10 Pezizomycotina classes currently recognized were represented in the sampling. These data strongly supported the monophyly of Pezizomycotina, Arthoniomycetes, Eurotiomycetes, Orbiliomycetes and Sordariomycetes. Pezizomycetes and Dothideomycetes also were resolved as monophyletic but not strongly supported by the data. Lecanoromycetes was resolved as paraphyletic in parsimony analyses but monophyletic in maximum likelihood and Bayesian analyses. Leotiomycetes was polyphyletic due to exclusion of Geoglossaceae. The two most basal classes of Pezizomycotina were Orbiliomycetes and Pezizomycetes, both of which comprise species that produce apothecial ascomata. The seven remaining classes formed a monophyletic group that corresponds to Leotiomyceta. Within Leotiomyceta, the supraclass clades of Leotiomycetes s.s. plus Sordariomycetes and Arthoniomycetes plus Dothideomycetes were resolved with moderate support.

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Spatafora JW, Sung GH, Johnson D, Hesse C, O'Rourke B, Serdani M et al. A five-gene phylogeny of Pezizomycotina. Mycologia. 2006 Nov 1;98(6):1018-1028. https://doi.org/10.3852/mycologia.98.6.1018