Abstract
We are constructing a physical framework for peach, which is a model fruit tree for the Rosaceae species. Currently the physical framework is composed of 1,128 contigs containing 8,508 BAC clones. Conservative estimates indicated these contigs cover at least 53% of the peach genome. Based on core genetic marker hybridizations, 168 contigs were anchored onto an integrated physical/genetic map. The 47 positioned contigs were localized on linkage group 1, which represents the most marker-saturated chromosome of peach. To verify the physical framework, we used 673 ESTs of the peach unigene set (PP_LE) and 64 cDNA (LF) clones, which were incorporated into the framework by random fingerprinting. At this juncture, more than 12% of BAC clones in the peach FPC database have hybridization hits (i.e. core genetic markers, ESTs, cDNAs). The physical framework for peach is located at the Genome Database for Rosaceae at www.genome.clemson.edu/gdr/.
| Original language | English (US) |
|---|---|
| Title of host publication | Proceedings of the Sixth International Peach Symposium |
| Publisher | International Society for Horticultural Science |
| Pages | 83-88 |
| Number of pages | 6 |
| ISBN (Print) | 9066055294, 9789066055292 |
| DOIs | |
| State | Published - Jan 1 2006 |
Publication series
| Name | Acta Horticulturae |
|---|---|
| Volume | 713 |
| ISSN (Print) | 0567-7572 |
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All Science Journal Classification (ASJC) codes
- Horticulture
Cite this
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A physical framework for the peach genome. / Zhebentyayeva, Tetyana; Horn, R.; Mook, J.; Lecouls, A.; Georgi, L.; Abbott, A. G.; Reighard, G. L.; Swire-Clark, G.; Baird, W. V.
Proceedings of the Sixth International Peach Symposium. International Society for Horticultural Science, 2006. p. 83-88 (Acta Horticulturae; Vol. 713).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
TY - GEN
T1 - A physical framework for the peach genome
AU - Zhebentyayeva, Tetyana
AU - Horn, R.
AU - Mook, J.
AU - Lecouls, A.
AU - Georgi, L.
AU - Abbott, A. G.
AU - Reighard, G. L.
AU - Swire-Clark, G.
AU - Baird, W. V.
PY - 2006/1/1
Y1 - 2006/1/1
N2 - We are constructing a physical framework for peach, which is a model fruit tree for the Rosaceae species. Currently the physical framework is composed of 1,128 contigs containing 8,508 BAC clones. Conservative estimates indicated these contigs cover at least 53% of the peach genome. Based on core genetic marker hybridizations, 168 contigs were anchored onto an integrated physical/genetic map. The 47 positioned contigs were localized on linkage group 1, which represents the most marker-saturated chromosome of peach. To verify the physical framework, we used 673 ESTs of the peach unigene set (PP_LE) and 64 cDNA (LF) clones, which were incorporated into the framework by random fingerprinting. At this juncture, more than 12% of BAC clones in the peach FPC database have hybridization hits (i.e. core genetic markers, ESTs, cDNAs). The physical framework for peach is located at the Genome Database for Rosaceae at www.genome.clemson.edu/gdr/.
AB - We are constructing a physical framework for peach, which is a model fruit tree for the Rosaceae species. Currently the physical framework is composed of 1,128 contigs containing 8,508 BAC clones. Conservative estimates indicated these contigs cover at least 53% of the peach genome. Based on core genetic marker hybridizations, 168 contigs were anchored onto an integrated physical/genetic map. The 47 positioned contigs were localized on linkage group 1, which represents the most marker-saturated chromosome of peach. To verify the physical framework, we used 673 ESTs of the peach unigene set (PP_LE) and 64 cDNA (LF) clones, which were incorporated into the framework by random fingerprinting. At this juncture, more than 12% of BAC clones in the peach FPC database have hybridization hits (i.e. core genetic markers, ESTs, cDNAs). The physical framework for peach is located at the Genome Database for Rosaceae at www.genome.clemson.edu/gdr/.
UR - http://www.scopus.com/inward/record.url?scp=33644991695&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=33644991695&partnerID=8YFLogxK
U2 - 10.17660/ActaHortic.2006.713.7
DO - 10.17660/ActaHortic.2006.713.7
M3 - Conference contribution
AN - SCOPUS:33644991695
SN - 9066055294
SN - 9789066055292
T3 - Acta Horticulturae
SP - 83
EP - 88
BT - Proceedings of the Sixth International Peach Symposium
PB - International Society for Horticultural Science
ER -