Actin filament segmentation using dynamic programming

Hongsheng Li, Tian Shen, Xiaolei Huang

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

Abstract

We introduce a novel algorithm for actin filament segmentation in 2D TIRFM image sequences. This problem is difficult because actin filaments dynamically change shapes during their growth, and the TIRFM images are usually noisy. We ask a user to specify the two tips of a filament of interest in the first frame. We then model the segmentation problem in an image sequence as a temporal chain, where its states are tip locations; given candidate tip locations, actin filaments' body points are inferred by a dynamic programming method, which adaptively generates candidate solutions. Combining candidate tip locations and their inferred body points, the temporal chain model is efficiently optimized using another dynamic programming method. Evaluation on noisy TIRFM image sequences demonstrates the accuracy and robustness of this approach.

Original languageEnglish (US)
Title of host publicationInformation Processing in Medical Imaging - 22nd International Conference, IPMI 2011, Proceedings
Pages411-423
Number of pages13
DOIs
Publication statusPublished - Jun 30 2011
Event22nd International Conference on Information Processing in Medical Imaging, IPMI 2011 - Kloster Irsee, Germany
Duration: Jul 3 2011Jul 8 2011

Publication series

NameLecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume6801 LNCS
ISSN (Print)0302-9743
ISSN (Electronic)1611-3349

Conference

Conference22nd International Conference on Information Processing in Medical Imaging, IPMI 2011
CountryGermany
CityKloster Irsee
Period7/3/117/8/11

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All Science Journal Classification (ASJC) codes

  • Theoretical Computer Science
  • Computer Science(all)

Cite this

Li, H., Shen, T., & Huang, X. (2011). Actin filament segmentation using dynamic programming. In Information Processing in Medical Imaging - 22nd International Conference, IPMI 2011, Proceedings (pp. 411-423). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 6801 LNCS). https://doi.org/10.1007/978-3-642-22092-0_34