Activation tag screening for cell expansion genes in Arabidopsis thaliana

Chaowen Xiao, Charles T. Anderson

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Citation (Scopus)

Abstract

Forward genetic screens for growth-deficient loss-of-function mutants have uncovered a wide array of genes involved in cell expansion. However, the centrality of cell growth to plant survival means that null mutations in many genes involved in this process are likely to be lethal early in development, making phenotypic analysis difficult. Additionally, the phenotypes of loss-of-function mutations in genes that are members of large gene families might be masked by functional redundancy with other family members. Activation tagging provides a method of screening for dominant overexpression phenotypes in an arbitrarily large collection of transgenic individuals, allowing for functional genomic identification of genes related to cell growth and expansion. In this chapter, we discuss the advantages and limitations of activation tag screening and describe a protocol for identifying activation tag lines with enhanced cell expansion, using dark-grown Arabidopsis thaliana seedlings as an experimental system. We also describe secondary screens to identify candidate genes for further cell biological and genetic characterization. These protocols can be adapted to any process or species of interest, as long as a suitable activation-tagged population and a genome sequence are available.

Original languageEnglish (US)
Title of host publicationPlant Cell Expansion
Subtitle of host publicationMethods and Protocols
PublisherSpringer New York
Pages159-171
Number of pages13
ISBN (Electronic)9781493919024
ISBN (Print)9781493919017
DOIs
StatePublished - Nov 18 2014

Fingerprint

Arabidopsis
Arabidopsis thaliana
screening
Genes
genes
cells
cell growth
Growth
Phenotype
phenotype
Mutation
lethal genes
Seedlings
early development
genetically modified organisms
Genome
genomics
mutants
genome
seedlings

All Science Journal Classification (ASJC) codes

  • Agricultural and Biological Sciences(all)
  • Medicine(all)

Cite this

Xiao, C., & Anderson, C. T. (2014). Activation tag screening for cell expansion genes in Arabidopsis thaliana. In Plant Cell Expansion: Methods and Protocols (pp. 159-171). Springer New York. https://doi.org/10.1007/978-1-4939-1902-4_14
Xiao, Chaowen ; Anderson, Charles T. / Activation tag screening for cell expansion genes in Arabidopsis thaliana. Plant Cell Expansion: Methods and Protocols. Springer New York, 2014. pp. 159-171
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Xiao, C & Anderson, CT 2014, Activation tag screening for cell expansion genes in Arabidopsis thaliana. in Plant Cell Expansion: Methods and Protocols. Springer New York, pp. 159-171. https://doi.org/10.1007/978-1-4939-1902-4_14

Activation tag screening for cell expansion genes in Arabidopsis thaliana. / Xiao, Chaowen; Anderson, Charles T.

Plant Cell Expansion: Methods and Protocols. Springer New York, 2014. p. 159-171.

Research output: Chapter in Book/Report/Conference proceedingChapter

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Xiao C, Anderson CT. Activation tag screening for cell expansion genes in Arabidopsis thaliana. In Plant Cell Expansion: Methods and Protocols. Springer New York. 2014. p. 159-171 https://doi.org/10.1007/978-1-4939-1902-4_14