An encyclopedia of mouse DNA elements (Mouse ENCODE)

John A. Stamatoyannopoulos, Michael Snyder, Ross Cameron Hardison, Bing Ren, Thomas Gingeras, David M. Gilbert, Mark Groudine, Michael Bender, Rajinder Kaul, Theresa Canfield, Erica Giste, Audra Johnson, Mia Zhang, Gayathri Balasundaram, Rachel Byron, Vaughan Roach, Peter J. Sabo, Richard Sandstrom, A. Sandra Stehling, Robert E. ThurmanSherman M. Weissman, Philip Cayting, Manoj Hariharan, Jin Lian, Yong Cheng, Stephen G. Landt, Zhihai Ma, Barbara J. Wold, Job Dekker, Gregory E. Crawford, Cheryl A. Keller Capone, Weisheng Wu, Christopher Morrissey, Swathi A. Kumar, Tejaswini Mishra, Deepti Jain, Marta Byrska-Bishop, Daniel James Blankenberg, Bryan R. Lajoiel, Gaurav Jain, Amartya Sanyal, Kaun Bei Chen, Olgert Denas, James Taylor, Gerd A. Blobel, Mitchell J. Weiss, Max Pimkin, Wulan Deng, Georgi K. Marinov, Brian A. Williams, Katherine I. Fisher-Aylor, Gilberto Desalvo, Anthony Kiralusha, Diane Trout, Henry Amrhein, Ali Mortazavi, Lee Edsall, David McCleary, Samantha Kuan, Yin Shen, Feng Yue, Zhen Ye, Carrie A. Davis, Chris Zaleski, Sonali Jha, Chenghai Xue, Alex Dobin, Wei Lin, Meagan Fastuca, Huaien Wang, Roderic Guigo, Sarah Djebali, Julien Lagarde, Tyrone Ryba, Takayo Sasaki, Venkat S. Malladi, Melissa S. Cline, Vanessa M. Kirkup, Katrina Learned, Kate R. Rosenbloom, W. James Kent, Elise A. Feingold, Peter J. Good, Michael Pazin, Rebecca F. Lowdon, Leslie B. Adams

Research output: Contribution to journalLetter

259 Citations (Scopus)

Abstract

To complement the human Encyclopedia of DNA Elements (ENCODE) project and to enable a broad range of mouse genomics efforts, the Mouse ENCODE Consortium is applying the same experimental pipelines developed for human ENCODE to annotate the mouse genome.

Original languageEnglish (US)
Article number418
JournalGenome biology
Volume13
Issue number8
DOIs
StatePublished - Aug 13 2012

Fingerprint

Encyclopedias
DNA
mice
Genomics
genomics
complement
genome
Genome

All Science Journal Classification (ASJC) codes

  • Ecology, Evolution, Behavior and Systematics
  • Genetics
  • Cell Biology

Cite this

Stamatoyannopoulos, J. A., Snyder, M., Hardison, R. C., Ren, B., Gingeras, T., Gilbert, D. M., ... Adams, L. B. (2012). An encyclopedia of mouse DNA elements (Mouse ENCODE). Genome biology, 13(8), [418]. https://doi.org/10.1186/gb-2012-13-8-418
Stamatoyannopoulos, John A. ; Snyder, Michael ; Hardison, Ross Cameron ; Ren, Bing ; Gingeras, Thomas ; Gilbert, David M. ; Groudine, Mark ; Bender, Michael ; Kaul, Rajinder ; Canfield, Theresa ; Giste, Erica ; Johnson, Audra ; Zhang, Mia ; Balasundaram, Gayathri ; Byron, Rachel ; Roach, Vaughan ; Sabo, Peter J. ; Sandstrom, Richard ; Stehling, A. Sandra ; Thurman, Robert E. ; Weissman, Sherman M. ; Cayting, Philip ; Hariharan, Manoj ; Lian, Jin ; Cheng, Yong ; Landt, Stephen G. ; Ma, Zhihai ; Wold, Barbara J. ; Dekker, Job ; Crawford, Gregory E. ; Keller Capone, Cheryl A. ; Wu, Weisheng ; Morrissey, Christopher ; Kumar, Swathi A. ; Mishra, Tejaswini ; Jain, Deepti ; Byrska-Bishop, Marta ; Blankenberg, Daniel James ; Lajoiel, Bryan R. ; Jain, Gaurav ; Sanyal, Amartya ; Chen, Kaun Bei ; Denas, Olgert ; Taylor, James ; Blobel, Gerd A. ; Weiss, Mitchell J. ; Pimkin, Max ; Deng, Wulan ; Marinov, Georgi K. ; Williams, Brian A. ; Fisher-Aylor, Katherine I. ; Desalvo, Gilberto ; Kiralusha, Anthony ; Trout, Diane ; Amrhein, Henry ; Mortazavi, Ali ; Edsall, Lee ; McCleary, David ; Kuan, Samantha ; Shen, Yin ; Yue, Feng ; Ye, Zhen ; Davis, Carrie A. ; Zaleski, Chris ; Jha, Sonali ; Xue, Chenghai ; Dobin, Alex ; Lin, Wei ; Fastuca, Meagan ; Wang, Huaien ; Guigo, Roderic ; Djebali, Sarah ; Lagarde, Julien ; Ryba, Tyrone ; Sasaki, Takayo ; Malladi, Venkat S. ; Cline, Melissa S. ; Kirkup, Vanessa M. ; Learned, Katrina ; Rosenbloom, Kate R. ; Kent, W. James ; Feingold, Elise A. ; Good, Peter J. ; Pazin, Michael ; Lowdon, Rebecca F. ; Adams, Leslie B. / An encyclopedia of mouse DNA elements (Mouse ENCODE). In: Genome biology. 2012 ; Vol. 13, No. 8.
@article{f9f76fc20a3941c6afb696d40aad11a6,
title = "An encyclopedia of mouse DNA elements (Mouse ENCODE)",
abstract = "To complement the human Encyclopedia of DNA Elements (ENCODE) project and to enable a broad range of mouse genomics efforts, the Mouse ENCODE Consortium is applying the same experimental pipelines developed for human ENCODE to annotate the mouse genome.",
author = "Stamatoyannopoulos, {John A.} and Michael Snyder and Hardison, {Ross Cameron} and Bing Ren and Thomas Gingeras and Gilbert, {David M.} and Mark Groudine and Michael Bender and Rajinder Kaul and Theresa Canfield and Erica Giste and Audra Johnson and Mia Zhang and Gayathri Balasundaram and Rachel Byron and Vaughan Roach and Sabo, {Peter J.} and Richard Sandstrom and Stehling, {A. Sandra} and Thurman, {Robert E.} and Weissman, {Sherman M.} and Philip Cayting and Manoj Hariharan and Jin Lian and Yong Cheng and Landt, {Stephen G.} and Zhihai Ma and Wold, {Barbara J.} and Job Dekker and Crawford, {Gregory E.} and {Keller Capone}, {Cheryl A.} and Weisheng Wu and Christopher Morrissey and Kumar, {Swathi A.} and Tejaswini Mishra and Deepti Jain and Marta Byrska-Bishop and Blankenberg, {Daniel James} and Lajoiel, {Bryan R.} and Gaurav Jain and Amartya Sanyal and Chen, {Kaun Bei} and Olgert Denas and James Taylor and Blobel, {Gerd A.} and Weiss, {Mitchell J.} and Max Pimkin and Wulan Deng and Marinov, {Georgi K.} and Williams, {Brian A.} and Fisher-Aylor, {Katherine I.} and Gilberto Desalvo and Anthony Kiralusha and Diane Trout and Henry Amrhein and Ali Mortazavi and Lee Edsall and David McCleary and Samantha Kuan and Yin Shen and Feng Yue and Zhen Ye and Davis, {Carrie A.} and Chris Zaleski and Sonali Jha and Chenghai Xue and Alex Dobin and Wei Lin and Meagan Fastuca and Huaien Wang and Roderic Guigo and Sarah Djebali and Julien Lagarde and Tyrone Ryba and Takayo Sasaki and Malladi, {Venkat S.} and Cline, {Melissa S.} and Kirkup, {Vanessa M.} and Katrina Learned and Rosenbloom, {Kate R.} and Kent, {W. James} and Feingold, {Elise A.} and Good, {Peter J.} and Michael Pazin and Lowdon, {Rebecca F.} and Adams, {Leslie B.}",
year = "2012",
month = "8",
day = "13",
doi = "10.1186/gb-2012-13-8-418",
language = "English (US)",
volume = "13",
journal = "Genome Biology",
issn = "1474-7596",
publisher = "BioMed Central",
number = "8",

}

Stamatoyannopoulos, JA, Snyder, M, Hardison, RC, Ren, B, Gingeras, T, Gilbert, DM, Groudine, M, Bender, M, Kaul, R, Canfield, T, Giste, E, Johnson, A, Zhang, M, Balasundaram, G, Byron, R, Roach, V, Sabo, PJ, Sandstrom, R, Stehling, AS, Thurman, RE, Weissman, SM, Cayting, P, Hariharan, M, Lian, J, Cheng, Y, Landt, SG, Ma, Z, Wold, BJ, Dekker, J, Crawford, GE, Keller Capone, CA, Wu, W, Morrissey, C, Kumar, SA, Mishra, T, Jain, D, Byrska-Bishop, M, Blankenberg, DJ, Lajoiel, BR, Jain, G, Sanyal, A, Chen, KB, Denas, O, Taylor, J, Blobel, GA, Weiss, MJ, Pimkin, M, Deng, W, Marinov, GK, Williams, BA, Fisher-Aylor, KI, Desalvo, G, Kiralusha, A, Trout, D, Amrhein, H, Mortazavi, A, Edsall, L, McCleary, D, Kuan, S, Shen, Y, Yue, F, Ye, Z, Davis, CA, Zaleski, C, Jha, S, Xue, C, Dobin, A, Lin, W, Fastuca, M, Wang, H, Guigo, R, Djebali, S, Lagarde, J, Ryba, T, Sasaki, T, Malladi, VS, Cline, MS, Kirkup, VM, Learned, K, Rosenbloom, KR, Kent, WJ, Feingold, EA, Good, PJ, Pazin, M, Lowdon, RF & Adams, LB 2012, 'An encyclopedia of mouse DNA elements (Mouse ENCODE)', Genome biology, vol. 13, no. 8, 418. https://doi.org/10.1186/gb-2012-13-8-418

An encyclopedia of mouse DNA elements (Mouse ENCODE). / Stamatoyannopoulos, John A.; Snyder, Michael; Hardison, Ross Cameron; Ren, Bing; Gingeras, Thomas; Gilbert, David M.; Groudine, Mark; Bender, Michael; Kaul, Rajinder; Canfield, Theresa; Giste, Erica; Johnson, Audra; Zhang, Mia; Balasundaram, Gayathri; Byron, Rachel; Roach, Vaughan; Sabo, Peter J.; Sandstrom, Richard; Stehling, A. Sandra; Thurman, Robert E.; Weissman, Sherman M.; Cayting, Philip; Hariharan, Manoj; Lian, Jin; Cheng, Yong; Landt, Stephen G.; Ma, Zhihai; Wold, Barbara J.; Dekker, Job; Crawford, Gregory E.; Keller Capone, Cheryl A.; Wu, Weisheng; Morrissey, Christopher; Kumar, Swathi A.; Mishra, Tejaswini; Jain, Deepti; Byrska-Bishop, Marta; Blankenberg, Daniel James; Lajoiel, Bryan R.; Jain, Gaurav; Sanyal, Amartya; Chen, Kaun Bei; Denas, Olgert; Taylor, James; Blobel, Gerd A.; Weiss, Mitchell J.; Pimkin, Max; Deng, Wulan; Marinov, Georgi K.; Williams, Brian A.; Fisher-Aylor, Katherine I.; Desalvo, Gilberto; Kiralusha, Anthony; Trout, Diane; Amrhein, Henry; Mortazavi, Ali; Edsall, Lee; McCleary, David; Kuan, Samantha; Shen, Yin; Yue, Feng; Ye, Zhen; Davis, Carrie A.; Zaleski, Chris; Jha, Sonali; Xue, Chenghai; Dobin, Alex; Lin, Wei; Fastuca, Meagan; Wang, Huaien; Guigo, Roderic; Djebali, Sarah; Lagarde, Julien; Ryba, Tyrone; Sasaki, Takayo; Malladi, Venkat S.; Cline, Melissa S.; Kirkup, Vanessa M.; Learned, Katrina; Rosenbloom, Kate R.; Kent, W. James; Feingold, Elise A.; Good, Peter J.; Pazin, Michael; Lowdon, Rebecca F.; Adams, Leslie B.

In: Genome biology, Vol. 13, No. 8, 418, 13.08.2012.

Research output: Contribution to journalLetter

TY - JOUR

T1 - An encyclopedia of mouse DNA elements (Mouse ENCODE)

AU - Stamatoyannopoulos, John A.

AU - Snyder, Michael

AU - Hardison, Ross Cameron

AU - Ren, Bing

AU - Gingeras, Thomas

AU - Gilbert, David M.

AU - Groudine, Mark

AU - Bender, Michael

AU - Kaul, Rajinder

AU - Canfield, Theresa

AU - Giste, Erica

AU - Johnson, Audra

AU - Zhang, Mia

AU - Balasundaram, Gayathri

AU - Byron, Rachel

AU - Roach, Vaughan

AU - Sabo, Peter J.

AU - Sandstrom, Richard

AU - Stehling, A. Sandra

AU - Thurman, Robert E.

AU - Weissman, Sherman M.

AU - Cayting, Philip

AU - Hariharan, Manoj

AU - Lian, Jin

AU - Cheng, Yong

AU - Landt, Stephen G.

AU - Ma, Zhihai

AU - Wold, Barbara J.

AU - Dekker, Job

AU - Crawford, Gregory E.

AU - Keller Capone, Cheryl A.

AU - Wu, Weisheng

AU - Morrissey, Christopher

AU - Kumar, Swathi A.

AU - Mishra, Tejaswini

AU - Jain, Deepti

AU - Byrska-Bishop, Marta

AU - Blankenberg, Daniel James

AU - Lajoiel, Bryan R.

AU - Jain, Gaurav

AU - Sanyal, Amartya

AU - Chen, Kaun Bei

AU - Denas, Olgert

AU - Taylor, James

AU - Blobel, Gerd A.

AU - Weiss, Mitchell J.

AU - Pimkin, Max

AU - Deng, Wulan

AU - Marinov, Georgi K.

AU - Williams, Brian A.

AU - Fisher-Aylor, Katherine I.

AU - Desalvo, Gilberto

AU - Kiralusha, Anthony

AU - Trout, Diane

AU - Amrhein, Henry

AU - Mortazavi, Ali

AU - Edsall, Lee

AU - McCleary, David

AU - Kuan, Samantha

AU - Shen, Yin

AU - Yue, Feng

AU - Ye, Zhen

AU - Davis, Carrie A.

AU - Zaleski, Chris

AU - Jha, Sonali

AU - Xue, Chenghai

AU - Dobin, Alex

AU - Lin, Wei

AU - Fastuca, Meagan

AU - Wang, Huaien

AU - Guigo, Roderic

AU - Djebali, Sarah

AU - Lagarde, Julien

AU - Ryba, Tyrone

AU - Sasaki, Takayo

AU - Malladi, Venkat S.

AU - Cline, Melissa S.

AU - Kirkup, Vanessa M.

AU - Learned, Katrina

AU - Rosenbloom, Kate R.

AU - Kent, W. James

AU - Feingold, Elise A.

AU - Good, Peter J.

AU - Pazin, Michael

AU - Lowdon, Rebecca F.

AU - Adams, Leslie B.

PY - 2012/8/13

Y1 - 2012/8/13

N2 - To complement the human Encyclopedia of DNA Elements (ENCODE) project and to enable a broad range of mouse genomics efforts, the Mouse ENCODE Consortium is applying the same experimental pipelines developed for human ENCODE to annotate the mouse genome.

AB - To complement the human Encyclopedia of DNA Elements (ENCODE) project and to enable a broad range of mouse genomics efforts, the Mouse ENCODE Consortium is applying the same experimental pipelines developed for human ENCODE to annotate the mouse genome.

UR - http://www.scopus.com/inward/record.url?scp=84865121188&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=84865121188&partnerID=8YFLogxK

U2 - 10.1186/gb-2012-13-8-418

DO - 10.1186/gb-2012-13-8-418

M3 - Letter

C2 - 22889292

AN - SCOPUS:84865121188

VL - 13

JO - Genome Biology

JF - Genome Biology

SN - 1474-7596

IS - 8

M1 - 418

ER -

Stamatoyannopoulos JA, Snyder M, Hardison RC, Ren B, Gingeras T, Gilbert DM et al. An encyclopedia of mouse DNA elements (Mouse ENCODE). Genome biology. 2012 Aug 13;13(8). 418. https://doi.org/10.1186/gb-2012-13-8-418