Analysis of next-generation sequencing data using galaxy

Daniel Blankenberg, Jennifer Hillman-Jackson

Research output: Contribution to journalArticle

22 Scopus citations

Abstract

The extraordinary throughput of next-generation sequencing (NGS) technology is outpacing our ability to analyze and interpret the data. This chapter will focus on practical informatics methods, strategies, and software tools for transforming NGS data into usable information through the use of a web-based platform, Galaxy. The Galaxy interface is explored through several different types of example analyses. Instructions for running one’s own Galaxy server on local hardware or on cloud computing resources are provided. Installing new tools into a personal Galaxy instance is also demonstrated.

Original languageEnglish (US)
Pages (from-to)21-43
Number of pages23
JournalMethods in Molecular Biology
Volume1150
DOIs
StatePublished - Jan 1 2014

All Science Journal Classification (ASJC) codes

  • Molecular Biology
  • Genetics

Fingerprint Dive into the research topics of 'Analysis of next-generation sequencing data using galaxy'. Together they form a unique fingerprint.

  • Cite this