Ccr4–not maintains genomic integrity by controlling the ubiquitylation and degradation of arrested RNAPII

Haoyang Jiang, Marley Wolgast, Laura M. Beebe, Joseph C. Reese

Research output: Contribution to journalArticle

2 Citations (Scopus)

Abstract

The Ccr4–Not complex regulates essentially every aspect of gene expression, from mRNA synthesis to protein destruction. The Not4 subunit of the complex contains an E3 RING domain and targets proteins for ubiquitin-dependent proteolysis. Ccr4–Not associates with elongating RNA polymerase II (RNAPII), which raises the possibility that it controls the degradation of elongation complex components. Here, we demonstrate that Ccr4–Not controls the ubiquitylation and turnover of Rpb1, the largest subunit of RNAPII, during transcription arrest. Deleting NOT4 or mutating its RING domain strongly reduced the DNA damage-dependent ubiquitylation and destruction of Rpb1. Surprisingly, in vitro ubiquitylation assays indicate that Ccr4–Not does not directly ubiqui-tylate Rpb1 but instead promotes Rpb1 ubiquitylation by the HECT domain-containing ligase Rsp5. Genetic analyses suggest that Ccr4–Not acts upstream of RSP5, where it acts to initiate the destruction process. Ccr4–Not binds Rsp5 and forms a ternary complex with it and the RNAPII elongation complex. Analysis of mutant Ccr4–Not lacking the RING domain of Not4 suggests that it both recruits Rsp5 and delivers the E2 Ubc4/5 to RNAPII. Our work reveals a previously unknown function of Ccr4–Not and identifies an essential new regulator of RNAPII turnover during genotoxic stress.

Original languageEnglish (US)
Pages (from-to)705-717
Number of pages13
JournalGenes and Development
Volume33
Issue number11-12
DOIs
StatePublished - Jun 1 2019

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RNA Polymerase II
Ubiquitination
DNA Damage
Ligases
Ubiquitin
Proteolysis
Gene Expression
Messenger RNA
Proteins

All Science Journal Classification (ASJC) codes

  • Genetics
  • Developmental Biology

Cite this

Jiang, Haoyang ; Wolgast, Marley ; Beebe, Laura M. ; Reese, Joseph C. / Ccr4–not maintains genomic integrity by controlling the ubiquitylation and degradation of arrested RNAPII. In: Genes and Development. 2019 ; Vol. 33, No. 11-12. pp. 705-717.
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Ccr4–not maintains genomic integrity by controlling the ubiquitylation and degradation of arrested RNAPII. / Jiang, Haoyang; Wolgast, Marley; Beebe, Laura M.; Reese, Joseph C.

In: Genes and Development, Vol. 33, No. 11-12, 01.06.2019, p. 705-717.

Research output: Contribution to journalArticle

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