Classification of chromosome sequences with entropy kernel and LKPLS algorithm

Zhenqiu Liu, Dechang Chen

Research output: Contribution to journalConference article

1 Scopus citations

Abstract

Kernel methods such as support vector machines have been used extensively for various classification tasks. In this paper, we describe an entropy based string kernel and a novel logistic kernel partial least square algorithm for classification of sequential data. Our experiments with a human chromosome dataset show that the new kernel can be computed efficiently and the algorithm leads to a high accuracy especially for the unbalanced training data.

Original languageEnglish (US)
Pages (from-to)543-551
Number of pages9
JournalLecture Notes in Computer Science
Volume3644
Issue numberPART I
Publication statusPublished - Oct 31 2005
EventInternational Conference on Intelligent Computing, ICIC 2005 - Hefei, China
Duration: Aug 23 2005Aug 26 2005

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All Science Journal Classification (ASJC) codes

  • Theoretical Computer Science
  • Computer Science(all)

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