Computational identification of genes modulating stem height–diameter allometry

Libo Jiang, Meixia Ye, Sheng Zhu, Yi Zhai, Meng Xu, Minren Huang, Rongling Wu

Research output: Contribution to journalArticle

2 Citations (Scopus)

Abstract

The developmental variation in stem height with respect to stem diameter is related to a broad range of ecological and evolutionary phenomena in trees, but the underlying genetic basis of this variation remains elusive. We implement a dynamic statistical model, functional mapping, to formulate a general procedure for the computational identification of quantitative trait loci (QTLs) that control stem height–diameter allometry during development. Functional mapping integrates the biological principles underlying trait formation and development into the association analysis of DNA genotype and endpoint phenotype, thus providing an incentive for understanding the mechanistic interplay between genes and development. Built on the basic tenet of functional mapping, we explore two core ecological scenarios of how stem height and stem diameter covary in response to environmental stimuli: (i) trees pioneer sunlit space by allocating more growth to stem height than diameter and (ii) trees maintain their competitive advantage through an inverse pattern. The model is equipped to characterize ‘pioneering’ QTLs (piQTLs) and ‘maintaining’ QTLs (miQTLs) which modulate these two ecological scenarios, respectively. In a practical application to a mapping population of full-sib hybrids derived from two Populus species, the model has well proven its versatility by identifying several piQTLs that promote height growth at a cost of diameter growth and several miQTLs that benefit radial growth at a cost of height growth. Judicious application of functional mapping may lead to improved strategies for studying the genetic control of the formation mechanisms underlying trade-offs among quantities of assimilates allocated to different growth parts.

Original languageEnglish (US)
Pages (from-to)2254-2264
Number of pages11
JournalPlant Biotechnology Journal
Volume14
Issue number12
DOIs
StatePublished - Dec 1 2016

Fingerprint

allometry
quantitative trait loci
stems
Quantitative Trait Loci
Growth
Genes
genes
Populus
Costs and Cost Analysis
Internal-External Control
pioneer species
Statistical Models
statistical models
endpoints
dynamic models
Motivation
Genotype
Phenotype
phenotype
genotype

All Science Journal Classification (ASJC) codes

  • Biotechnology
  • Agronomy and Crop Science
  • Plant Science

Cite this

Jiang, Libo ; Ye, Meixia ; Zhu, Sheng ; Zhai, Yi ; Xu, Meng ; Huang, Minren ; Wu, Rongling. / Computational identification of genes modulating stem height–diameter allometry. In: Plant Biotechnology Journal. 2016 ; Vol. 14, No. 12. pp. 2254-2264.
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Computational identification of genes modulating stem height–diameter allometry. / Jiang, Libo; Ye, Meixia; Zhu, Sheng; Zhai, Yi; Xu, Meng; Huang, Minren; Wu, Rongling.

In: Plant Biotechnology Journal, Vol. 14, No. 12, 01.12.2016, p. 2254-2264.

Research output: Contribution to journalArticle

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