Development of PCR assays targeting genes in O-antigen gene clusters for detection and identification of Escherichia coli O45 and O55 serogroups

Chitrita Debroy, Pina M. Fratamico, Elisabeth Roberts, Michael A. Davis, Yanhong Liu

Research output: Contribution to journalArticle

57 Citations (Scopus)

Abstract

The Escherichia coli O45 O-antigen gene cluster of strain O45:H2 96-3285 was sequenced, and conventional (singleplex), multiplex, and real-time PCR assays were designed to amplify regions in the wzx (O-antigen flippase) and wzy (O-antigen polymerase) genes. In addition, PCR assays targeting the E. coli O55 wzx and wzy genes were designed based on previously published sequences. PCR assays targeting E. coli O45 showed 100% specificity for this serogroup, whereas by PCR assays specific for E. coli O55, 97/102 strains serotyped as E. coli O55 were positive for wzx and 98/102 for wzy. Multiplex PCR assays targeting the E. coli O45 and the E. coli O55 wzx and wzy genes were used to detect the organisms in fecal samples spiked at levels of 106 and 108 CFU/0.2 g feces. Thus, the PCR assays can be used to detect and identify E. coli serogroups O45 and O55.

Original languageEnglish (US)
Pages (from-to)4919-4924
Number of pages6
JournalApplied and environmental microbiology
Volume71
Issue number8
DOIs
StatePublished - Aug 1 2005

Fingerprint

O Antigens
Gene Targeting
gene targeting
Multigene Family
antigen
multigene family
targeting
serotypes
assay
Escherichia coli
antigens
Polymerase Chain Reaction
gene
assays
Genes
feces
genes
Serogroup
detection
Multiplex Polymerase Chain Reaction

All Science Journal Classification (ASJC) codes

  • Biotechnology
  • Food Science
  • Applied Microbiology and Biotechnology
  • Ecology

Cite this

Debroy, Chitrita ; Fratamico, Pina M. ; Roberts, Elisabeth ; Davis, Michael A. ; Liu, Yanhong. / Development of PCR assays targeting genes in O-antigen gene clusters for detection and identification of Escherichia coli O45 and O55 serogroups. In: Applied and environmental microbiology. 2005 ; Vol. 71, No. 8. pp. 4919-4924.
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Development of PCR assays targeting genes in O-antigen gene clusters for detection and identification of Escherichia coli O45 and O55 serogroups. / Debroy, Chitrita; Fratamico, Pina M.; Roberts, Elisabeth; Davis, Michael A.; Liu, Yanhong.

In: Applied and environmental microbiology, Vol. 71, No. 8, 01.08.2005, p. 4919-4924.

Research output: Contribution to journalArticle

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