Exploitation of structural and functional genomics databases for gene identification in peach

Tetyana Zhebentyayeva, D. Jiwan, J. H. Jun, D. A. Lalli, S. Forrest, J. Duncan, D. Main, A. G. Abbott, G. L. Reighard, A. Callahan, R. Scorza

Research output: Contribution to journalArticle

1 Citation (Scopus)

Abstract

This research aims at the development of peach as a model genome for the identification, characterization, and cloning of important genes in Rosaceae species. We have constructed an initial physical map for peach. The map is anchored onto the general Prunus genetic map and has been integrated with a peach transcript map (http://www.rosaceae.org). Our efforts to exploit the peach genomic databases are focused on two genomic regions of interest: the distal part of linkage group 2 associated with the genes for root-knot nematode resistance and the distal part of linkage group 4 which is important for fruit characters such as freestone and melting flesh. Our approach combines linkage genetic mapping using EST-based genetic markers, localization of the markers on the physical framework, and sequencing the genomic region of interest. Preliminary results illustrate the efficiency of this strategy to facilitate gene discovery in peach.

Original languageEnglish (US)
Pages (from-to)711-718
Number of pages8
JournalActa Horticulturae
Volume738
StatePublished - Dec 1 2007

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peaches
linkage groups
genes
genomics
physical chromosome mapping
Rosaceae
Prunus
root-knot nematodes
melting
chromosome mapping
linkage (genetics)
molecular cloning
genetic databases
genetic markers
fruits
genome

All Science Journal Classification (ASJC) codes

  • Horticulture

Cite this

Zhebentyayeva, T., Jiwan, D., Jun, J. H., Lalli, D. A., Forrest, S., Duncan, J., ... Scorza, R. (2007). Exploitation of structural and functional genomics databases for gene identification in peach. Acta Horticulturae, 738, 711-718.
Zhebentyayeva, Tetyana ; Jiwan, D. ; Jun, J. H. ; Lalli, D. A. ; Forrest, S. ; Duncan, J. ; Main, D. ; Abbott, A. G. ; Reighard, G. L. ; Callahan, A. ; Scorza, R. / Exploitation of structural and functional genomics databases for gene identification in peach. In: Acta Horticulturae. 2007 ; Vol. 738. pp. 711-718.
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Zhebentyayeva, T, Jiwan, D, Jun, JH, Lalli, DA, Forrest, S, Duncan, J, Main, D, Abbott, AG, Reighard, GL, Callahan, A & Scorza, R 2007, 'Exploitation of structural and functional genomics databases for gene identification in peach', Acta Horticulturae, vol. 738, pp. 711-718.

Exploitation of structural and functional genomics databases for gene identification in peach. / Zhebentyayeva, Tetyana; Jiwan, D.; Jun, J. H.; Lalli, D. A.; Forrest, S.; Duncan, J.; Main, D.; Abbott, A. G.; Reighard, G. L.; Callahan, A.; Scorza, R.

In: Acta Horticulturae, Vol. 738, 01.12.2007, p. 711-718.

Research output: Contribution to journalArticle

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AU - Jun, J. H.

AU - Lalli, D. A.

AU - Forrest, S.

AU - Duncan, J.

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AU - Callahan, A.

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