Fast screening of protein surfaces using geometric invariant fingerprints

Shuangye Yin, Elizabeth A. Proctor, Alexey A. Lugovskoy, Nikolay V. Dokholyan

Research output: Contribution to journalArticle

28 Citations (Scopus)

Abstract

We develop a rapid and efficient method for the comparison of protein local surface similarities using geometric invariants (fingerprints). By combining fast fingerprint comparison with explicit alignment, we successfully screen the entire Protein Data Bank for proteins that possess local surface similarities. Our method is independent of sequence and fold similarities, and has potential application to protein structure annotation and protein-protein interface design.

Original languageEnglish (US)
Pages (from-to)16622-16626
Number of pages5
JournalProceedings of the National Academy of Sciences of the United States of America
Volume106
Issue number39
DOIs
StatePublished - Sep 29 2009

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Dermatoglyphics
Membrane Proteins
Proteins
Molecular Sequence Annotation
Databases

All Science Journal Classification (ASJC) codes

  • General

Cite this

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Fast screening of protein surfaces using geometric invariant fingerprints. / Yin, Shuangye; Proctor, Elizabeth A.; Lugovskoy, Alexey A.; Dokholyan, Nikolay V.

In: Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 39, 29.09.2009, p. 16622-16626.

Research output: Contribution to journalArticle

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