Flexibility, diversity, and cooperativity: Pillars of enzyme catalysis

Gordon G. Hammes, Stephen J. Benkovic, Sharon Hammes-Schiffer

Research output: Contribution to journalArticle

153 Scopus citations

Abstract

This brief review discusses our current understanding of the molecular basis of enzyme catalysis. A historical development is presented, beginning with steady state kinetics and progressing through modern fast reaction methods, nuclear magnetic resonance, and single-molecule fluorescence techniques. Experimental results are summarized for ribonuclease, aspartate aminotransferase, and especially dihydrofolate reductase (DHFR). Multiple intermediates, multiple conformations, and cooperative conformational changes are shown to be an essential part of virtually all enzyme mechanisms. In the case of DHFR, theoretical investigations have provided detailed information about the movement of atoms within the enzyme-substrate complex as the reaction proceeds along the collective reaction coordinate for hydride transfer. A general mechanism is presented for enzyme catalysis that includes multiple intermediates and a complex, multidimensional standard free energy surface. Protein flexibility, diverse protein conformations, and cooperative conformational changes are important features of this model.

Original languageEnglish (US)
Pages (from-to)10422-10430
Number of pages9
JournalBiochemistry
Volume50
Issue number48
DOIs
StatePublished - Dec 6 2011

All Science Journal Classification (ASJC) codes

  • Biochemistry

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    Hammes, G. G., Benkovic, S. J., & Hammes-Schiffer, S. (2011). Flexibility, diversity, and cooperativity: Pillars of enzyme catalysis. Biochemistry, 50(48), 10422-10430. https://doi.org/10.1021/bi201486f