FTFD: An informatics pipeline supporting phylogenomic analysis of fungal transcription factors

Jongsun Park, Jaejin Park, Suwang Jang, Seryun Kim, Sunghyung Kong, Jaeyoung Choi, Kyohun Ahn, Juhyeon Kim, Seungmin Lee, Sunggon Kim, Bongsoo Park, Kyongyong Jung, Soonok Kim, Seogchan Kang, Yong Hwan Lee

Research output: Contribution to journalArticle

92 Citations (Scopus)

Abstract

Summary: Genomes of more than 60 fungal species have been sequenced to date, yet there has been no systematic approach to analyze fungal transcription factors (TFs) kingdom widely. We developed a standardized pipeline for annotating TFs in fungal genomes. Resulting data have been archived in a new database termed the Fungal Transcription Factor Database (FTFD). In FTFD, 31 832 putative fungal TFs, identified from 62 fungal and 3 Oomycete species, were classified into 61 families and phylogenetically analyzed. The FTFD will serve as a community resource supporting comparative analyses of the distribution and domain structure of TFs within and across species.

Original languageEnglish (US)
Pages (from-to)1024-1025
Number of pages2
JournalBioinformatics
Volume24
Issue number7
DOIs
StatePublished - Apr 1 2008

Fingerprint

Informatics
Transcription factors
Transcription Factor
Transcription Factors
Pipelines
Databases
Genome
Fungal Genome
Genes
Oomycetes
Resources

All Science Journal Classification (ASJC) codes

  • Statistics and Probability
  • Biochemistry
  • Molecular Biology
  • Computer Science Applications
  • Computational Theory and Mathematics
  • Computational Mathematics

Cite this

Park, J., Park, J., Jang, S., Kim, S., Kong, S., Choi, J., ... Lee, Y. H. (2008). FTFD: An informatics pipeline supporting phylogenomic analysis of fungal transcription factors. Bioinformatics, 24(7), 1024-1025. https://doi.org/10.1093/bioinformatics/btn058
Park, Jongsun ; Park, Jaejin ; Jang, Suwang ; Kim, Seryun ; Kong, Sunghyung ; Choi, Jaeyoung ; Ahn, Kyohun ; Kim, Juhyeon ; Lee, Seungmin ; Kim, Sunggon ; Park, Bongsoo ; Jung, Kyongyong ; Kim, Soonok ; Kang, Seogchan ; Lee, Yong Hwan. / FTFD : An informatics pipeline supporting phylogenomic analysis of fungal transcription factors. In: Bioinformatics. 2008 ; Vol. 24, No. 7. pp. 1024-1025.
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Park, J, Park, J, Jang, S, Kim, S, Kong, S, Choi, J, Ahn, K, Kim, J, Lee, S, Kim, S, Park, B, Jung, K, Kim, S, Kang, S & Lee, YH 2008, 'FTFD: An informatics pipeline supporting phylogenomic analysis of fungal transcription factors', Bioinformatics, vol. 24, no. 7, pp. 1024-1025. https://doi.org/10.1093/bioinformatics/btn058

FTFD : An informatics pipeline supporting phylogenomic analysis of fungal transcription factors. / Park, Jongsun; Park, Jaejin; Jang, Suwang; Kim, Seryun; Kong, Sunghyung; Choi, Jaeyoung; Ahn, Kyohun; Kim, Juhyeon; Lee, Seungmin; Kim, Sunggon; Park, Bongsoo; Jung, Kyongyong; Kim, Soonok; Kang, Seogchan; Lee, Yong Hwan.

In: Bioinformatics, Vol. 24, No. 7, 01.04.2008, p. 1024-1025.

Research output: Contribution to journalArticle

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AU - Choi, Jaeyoung

AU - Ahn, Kyohun

AU - Kim, Juhyeon

AU - Lee, Seungmin

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AU - Park, Bongsoo

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AU - Lee, Yong Hwan

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