Fungal cytochrome P450 database

Jongsun Park, Seungmin Lee, Jaeyoung Choi, Kyohun Ahn, Bongsoo Park, Jaejin Park, Seogchan Kang, Yong Hwan Lee

Research output: Contribution to journalArticle

78 Citations (Scopus)

Abstract

Background: Cytochrome P450 enzymes play critical roles in fungal biology and ecology. To support studies on the roles and evolution of cytochrome P450 enzymes in fungi based on rapidly accumulating genome sequences from diverse fungal species, an efficient bioinformatics platform specialized for this super family of proteins is highly desirable. Results: The Fungal Cytochrome P450 Database (FCPD) archives genes encoding P450s in the genomes of 66 fungal and 4 oomycete species (4,538 in total) and supports analyses of their sequences, chromosomal distribution pattern, and evolutionary histories and relationships. The archived P450s were classified into 16 classes based on InterPro terms and clustered into 141 groups using tribe-MCL. The proportion of P450s in the total proteome and class distribution in individual species exhibited certain taxon-specific characteristics. Conclusion: The FCPD will facilitate systematic identification and multifaceted analyses of P450s at multiple taxon levels via the web. All data and functions are available at the web site http://p450.riceblast.snu.ac.kr/.

Original languageEnglish (US)
Article number402
JournalBMC genomics
Volume9
DOIs
StatePublished - Aug 28 2008

Fingerprint

Cytochrome P-450 Enzyme System
Databases
Fungal Genome
Oomycetes
Proteome
Ecology
Computational Biology
Sequence Analysis
Fungi
Genome
Genes
Proteins

All Science Journal Classification (ASJC) codes

  • Biotechnology
  • Genetics

Cite this

Park, J., Lee, S., Choi, J., Ahn, K., Park, B., Park, J., ... Lee, Y. H. (2008). Fungal cytochrome P450 database. BMC genomics, 9, [402]. https://doi.org/10.1186/1471-2164-9-402
Park, Jongsun ; Lee, Seungmin ; Choi, Jaeyoung ; Ahn, Kyohun ; Park, Bongsoo ; Park, Jaejin ; Kang, Seogchan ; Lee, Yong Hwan. / Fungal cytochrome P450 database. In: BMC genomics. 2008 ; Vol. 9.
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Park, J, Lee, S, Choi, J, Ahn, K, Park, B, Park, J, Kang, S & Lee, YH 2008, 'Fungal cytochrome P450 database', BMC genomics, vol. 9, 402. https://doi.org/10.1186/1471-2164-9-402

Fungal cytochrome P450 database. / Park, Jongsun; Lee, Seungmin; Choi, Jaeyoung; Ahn, Kyohun; Park, Bongsoo; Park, Jaejin; Kang, Seogchan; Lee, Yong Hwan.

In: BMC genomics, Vol. 9, 402, 28.08.2008.

Research output: Contribution to journalArticle

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Park J, Lee S, Choi J, Ahn K, Park B, Park J et al. Fungal cytochrome P450 database. BMC genomics. 2008 Aug 28;9. 402. https://doi.org/10.1186/1471-2164-9-402