Genetic robustness at the codon level as a measure of selection

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Abstract

Selection at the DNA level is usually detected by analysing substitution rates from multiple-species comparisons. It has been suggested that measures of genetic robustness at the codon level, which can be measured by analysing a single coding sequence, can be used to estimate selection, but the validity of these measures has been questioned. Here I test the efficiency of different measures of genetic robustness at the codon level to estimate the level of selection acting on a gene. I find that volatility and other measures of robustness are correlated with dN/dS, and that this is not simply the effect of a preference for translationally optimal codons. I discuss the possible implications and the possible problems of these methods based on single-sequence codon usage analysis.

Original languageEnglish (US)
Pages (from-to)64-69
Number of pages6
JournalGene
Volume443
Issue number1-2
DOIs
StatePublished - Aug 15 2009

All Science Journal Classification (ASJC) codes

  • Genetics

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