High-resolution genome-wide mapping of the primary structure of chromatin

Zhenhai Zhang, Benjamin Franklin Pugh

Research output: Contribution to journalReview article

107 Citations (Scopus)

Abstract

The genomic organization of chromatin is increasingly recognized as a key regulator of cell behavior, but deciphering its regulation mechanisms requires detailed knowledge of chromatin's primary structure - the assembly of nucleosomes throughout the genome. This Primer explains the principles for mapping and analyzing the primary organization of chromatin on a genomic scale. After introducing chromatin organization and its impact on gene regulation and human health, we then describe methods that detect nucleosome positioning and occupancy levels using chromatin immunoprecipitation in combination with deep sequencing (ChIP-Seq), a strategy that is now straightforward and cost efficient. We then explore current strategies for converting the sequence information into knowledge about chromatin, an exciting challenge for biologists and bioinformaticians.

Original languageEnglish (US)
Pages (from-to)175-186
Number of pages12
JournalCell
Volume144
Issue number2
DOIs
StatePublished - Jan 21 2011

Fingerprint

Chromosome Mapping
Chromatin
Genes
Nucleosomes
High-Throughput Nucleotide Sequencing
Chromatin Immunoprecipitation
Gene expression
Genome
Costs and Cost Analysis
Health
Costs

All Science Journal Classification (ASJC) codes

  • Biochemistry, Genetics and Molecular Biology(all)

Cite this

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High-resolution genome-wide mapping of the primary structure of chromatin. / Zhang, Zhenhai; Pugh, Benjamin Franklin.

In: Cell, Vol. 144, No. 2, 21.01.2011, p. 175-186.

Research output: Contribution to journalReview article

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