Abstract
Complex biomedical analyses require the use of multiple software tools in concert and remain challenging for much of the biomedical research community. We introduce GenomeSpace (http://www.genomespace.org), a cloud-based, cooperative community resource that currently supports the streamlined interaction of 20 bioinformatics tools and data resources. To facilitate integrative analysis by non-programmers, it offers a growing set of 'recipes', short workflows to guide investigators through high-utility analysis tasks.
| Original language | English (US) |
|---|---|
| Pages (from-to) | 245-247 |
| Number of pages | 3 |
| Journal | Nature methods |
| Volume | 13 |
| Issue number | 3 |
| DOIs | |
| State | Published - Feb 25 2016 |
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All Science Journal Classification (ASJC) codes
- Biotechnology
- Biochemistry
- Molecular Biology
- Cell Biology
Cite this
}
Integrative genomic analysis by interoperation of bioinformatics tools in GenomeSpace. / Qu, Kun; Garamszegi, Sara; Wu, Felix; Thorvaldsdottir, Helga; Liefeld, Ted; Ocana, Marco; Borges-Rivera, Diego; Pochet, Nathalie; Robinson, James T.; Demchak, Barry; Hull, Tim; Ben-Artzi, Gil; Blankenberg, Daniel; Barber, Galt P.; Lee, Brian T.; Kuhn, Robert M.; Nekrutenko, Anton; Segal, Eran; Ideker, Trey; Reich, Michael; Regev, Aviv; Y Chang, Howard; Mesirov, Jill P.
In: Nature methods, Vol. 13, No. 3, 25.02.2016, p. 245-247.Research output: Contribution to journal › Article
TY - JOUR
T1 - Integrative genomic analysis by interoperation of bioinformatics tools in GenomeSpace
AU - Qu, Kun
AU - Garamszegi, Sara
AU - Wu, Felix
AU - Thorvaldsdottir, Helga
AU - Liefeld, Ted
AU - Ocana, Marco
AU - Borges-Rivera, Diego
AU - Pochet, Nathalie
AU - Robinson, James T.
AU - Demchak, Barry
AU - Hull, Tim
AU - Ben-Artzi, Gil
AU - Blankenberg, Daniel
AU - Barber, Galt P.
AU - Lee, Brian T.
AU - Kuhn, Robert M.
AU - Nekrutenko, Anton
AU - Segal, Eran
AU - Ideker, Trey
AU - Reich, Michael
AU - Regev, Aviv
AU - Y Chang, Howard
AU - Mesirov, Jill P.
PY - 2016/2/25
Y1 - 2016/2/25
N2 - Complex biomedical analyses require the use of multiple software tools in concert and remain challenging for much of the biomedical research community. We introduce GenomeSpace (http://www.genomespace.org), a cloud-based, cooperative community resource that currently supports the streamlined interaction of 20 bioinformatics tools and data resources. To facilitate integrative analysis by non-programmers, it offers a growing set of 'recipes', short workflows to guide investigators through high-utility analysis tasks.
AB - Complex biomedical analyses require the use of multiple software tools in concert and remain challenging for much of the biomedical research community. We introduce GenomeSpace (http://www.genomespace.org), a cloud-based, cooperative community resource that currently supports the streamlined interaction of 20 bioinformatics tools and data resources. To facilitate integrative analysis by non-programmers, it offers a growing set of 'recipes', short workflows to guide investigators through high-utility analysis tasks.
UR - http://www.scopus.com/inward/record.url?scp=84959200412&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=84959200412&partnerID=8YFLogxK
U2 - 10.1038/nmeth.3732
DO - 10.1038/nmeth.3732
M3 - Article
C2 - 26780094
AN - SCOPUS:84959200412
VL - 13
SP - 245
EP - 247
JO - Nature Methods
JF - Nature Methods
SN - 1548-7091
IS - 3
ER -