Isolation, sequence analysis, and expression studies of florally expressed cDNAs in Arabidopsis

Wei Hu, Yixing Wang, Christian Bowers, Hong Ma

Research output: Contribution to journalArticle

39 Citations (Scopus)

Abstract

Molecular genetics has identified dozens of genes that regulate flower development in Arabidopsis. However, the complexity of flower development suggests that many other genes are yet to be uncovered. To identify floral genes that are expressed at low levels in the flower, we have sequenced 1587 cDNA fragments from a subtractive floral cDNA library. A total of 1222 unique genes represented by these ESTs are distributed on all five chromosomes with similar frequencies as all predicted genes in the genome. Among these, 17 genes were shown to be expressed anywhere for the first time because they were not found in previous EST and full-length cDNA datasets. Furthermore, 724 of the genes revealed by this library were not definitively shown to be expressed in the flower by previous floral EST datasets. In addition, 49 transcriptional regulators, 31 protein kinases, 12 zinc-finger proteins and other signaling proteins were found to be present in floral buds. Moreover, the EST sequences likely extended the transcribed regions of 26 previously annotated genes, and may have uncovered several previously unrecognized genes. To obtain additional clues about possible gene function, we hybridized cDNA microarray with probes derived from wild-type Arabidopsis rosette leaves and floral buds. We estimated that over 50% of genes were expressed at levels lower than 1/30 of the highest detectable signal intensity, indicating that many floral genes are expressed at low levels. Furthermore, 97 genes were found to be expressed at a higher level in the flower than the leaf by the Significance Analysis of Microarray (SAM) method with a 1.0% false discovery rate (FDR). Further RT-PCR analyses of selected genes support the microarray results. We suggest that the genes encoding putative regulatory proteins and at least some proteins with currently unknown functions might play important roles during flowering.

Original languageEnglish (US)
Pages (from-to)545-563
Number of pages19
JournalPlant molecular biology
Volume53
Issue number4
DOIs
StatePublished - Nov 1 2003

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Arabidopsis
Sequence Analysis
sequence analysis
Complementary DNA
Genes
genes
Expressed Sequence Tags
Microarrays
Gene Library
flowering
flowers
Proteins
buds
Gene encoding
Zinc Fingers
proteins
zinc finger motif
Microarray Analysis
regulatory proteins
Oligonucleotide Array Sequence Analysis

All Science Journal Classification (ASJC) codes

  • Agronomy and Crop Science
  • Genetics
  • Plant Science

Cite this

Hu, Wei ; Wang, Yixing ; Bowers, Christian ; Ma, Hong. / Isolation, sequence analysis, and expression studies of florally expressed cDNAs in Arabidopsis. In: Plant molecular biology. 2003 ; Vol. 53, No. 4. pp. 545-563.
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Isolation, sequence analysis, and expression studies of florally expressed cDNAs in Arabidopsis. / Hu, Wei; Wang, Yixing; Bowers, Christian; Ma, Hong.

In: Plant molecular biology, Vol. 53, No. 4, 01.11.2003, p. 545-563.

Research output: Contribution to journalArticle

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