Manipulation of FASTQ data with galaxy

Daniel James Blankenberg, Assaf Gordon, Gregory Von Kuster, Nathan Coraor, James Taylor, Anton Nekrutenko, Galaxy Team

Research output: Contribution to journalArticle

328 Citations (Scopus)

Abstract

Summary: Here, we describe a tool suite that functions on all of the commonly known FASTQ format variants and provides a pipeline for manipulating next generation sequencing data taken from a sequencing machine all the way through the quality filtering steps.

Original languageEnglish (US)
Article numberbtq281
Pages (from-to)1783-1785
Number of pages3
JournalBioinformatics
Volume26
Issue number14
DOIs
StatePublished - Jun 18 2010

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Galaxies
Sequencing
Manipulation
Pipelines
Filtering

All Science Journal Classification (ASJC) codes

  • Statistics and Probability
  • Biochemistry
  • Molecular Biology
  • Computer Science Applications
  • Computational Theory and Mathematics
  • Computational Mathematics

Cite this

Blankenberg, D. J., Gordon, A., Von Kuster, G., Coraor, N., Taylor, J., Nekrutenko, A., & Team, G. (2010). Manipulation of FASTQ data with galaxy. Bioinformatics, 26(14), 1783-1785. [btq281]. https://doi.org/10.1093/bioinformatics/btq281
Blankenberg, Daniel James ; Gordon, Assaf ; Von Kuster, Gregory ; Coraor, Nathan ; Taylor, James ; Nekrutenko, Anton ; Team, Galaxy. / Manipulation of FASTQ data with galaxy. In: Bioinformatics. 2010 ; Vol. 26, No. 14. pp. 1783-1785.
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Blankenberg, DJ, Gordon, A, Von Kuster, G, Coraor, N, Taylor, J, Nekrutenko, A & Team, G 2010, 'Manipulation of FASTQ data with galaxy', Bioinformatics, vol. 26, no. 14, btq281, pp. 1783-1785. https://doi.org/10.1093/bioinformatics/btq281

Manipulation of FASTQ data with galaxy. / Blankenberg, Daniel James; Gordon, Assaf; Von Kuster, Gregory; Coraor, Nathan; Taylor, James; Nekrutenko, Anton; Team, Galaxy.

In: Bioinformatics, Vol. 26, No. 14, btq281, 18.06.2010, p. 1783-1785.

Research output: Contribution to journalArticle

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Blankenberg DJ, Gordon A, Von Kuster G, Coraor N, Taylor J, Nekrutenko A et al. Manipulation of FASTQ data with galaxy. Bioinformatics. 2010 Jun 18;26(14):1783-1785. btq281. https://doi.org/10.1093/bioinformatics/btq281