Manipulation of FASTQ data with galaxy

Daniel Blankenberg, Assaf Gordon, Gregory Von Kuster, Nathan Coraor, James Taylor, Anton Nekrutenko, Galaxy Team

Research output: Contribution to journalArticlepeer-review

405 Scopus citations

Abstract

Summary: Here, we describe a tool suite that functions on all of the commonly known FASTQ format variants and provides a pipeline for manipulating next generation sequencing data taken from a sequencing machine all the way through the quality filtering steps.

Original languageEnglish (US)
Article numberbtq281
Pages (from-to)1783-1785
Number of pages3
JournalBioinformatics
Volume26
Issue number14
DOIs
StatePublished - Jun 18 2010

All Science Journal Classification (ASJC) codes

  • Statistics and Probability
  • Biochemistry
  • Molecular Biology
  • Computer Science Applications
  • Computational Theory and Mathematics
  • Computational Mathematics

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