New universal primers for genotyping and resistance detection of low HBV DNA levels

Yongqing Tong, Bei Liu, Hui Liu, Hongyun Zheng, Jian Gu, Hang Liu, Min Lin, Yali Ding, Chunhua Song, Yan Li

Research output: Contribution to journalArticle

3 Scopus citations

Abstract

HBV (hepatitis B virus) genotyping is important in determining the clinical manifestation of disease and treatment response, particularly, in patients with low viral loads. Also, sensitive detection of HBV antiviral drug resistance mutations is essential for monitoring therapy response. Asensitive direct sequencing method for genotyping and the drug resistance mutation detection of low levels of HBV DNA in patients' plasma is developed by PCR amplification of the DNA with novel universal primers. The novel, common, and universal primers were identified by alignment of RT region of all the HBV DNA sequences in databases. These primers could efficiently amplify the RT region of HBV virus at low DNA levels by directly sequencing the resulting PCR products, and mapping with the reference sequence made it possible to clearly obtain the HBV subtypes and identify the resistance mutations in the samples with HBV DNA level as low as 20 IU/mL. We examined the reliability of the method in clinical samples, and found it could detect the HBV subtypes and drug resistance mutations in 80 clinical HBV samples with low HBV DNA levels ranging from 20 to 200 IU/mL. This method is a sensitive and reliable direct sequencing method for HBV genotyping and antiviral drug resistance mutation detection, and is helpful for efficiently monitoring the response to therapy in HBV patients.

Original languageEnglish (US)
Article number232
JournalMedicine (United States)
Volume95
Issue number33
DOIs
StatePublished - Aug 1 2016

All Science Journal Classification (ASJC) codes

  • Medicine(all)

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    Tong, Y., Liu, B., Liu, H., Zheng, H., Gu, J., Liu, H., Lin, M., Ding, Y., Song, C., & Li, Y. (2016). New universal primers for genotyping and resistance detection of low HBV DNA levels. Medicine (United States), 95(33), [232]. https://doi.org/10.1097/MD.0000000000004618