NusG/Spt5: Are there common functions of this ubiquitous transcription elongation factor?

Alexander Victor Yakhnin, Paul Lee Babitzke

Research output: Contribution to journalReview article

23 Citations (Scopus)

Abstract

NusG/Spt5 is a transcription elongation factor that assists in DNA-templated RNA synthesis by cellular RNA polymerases (RNAP). The modular domain composition of NusG/Spt5 and the way it binds to RNAP are conserved in all three domains of life. NusG/Spt5 closes RNAP around the DNA binding channel, thereby increasing transcription processivity. Recruitment of additional factors to elongating RNAP may be another conserved function of this ubiquitous protein. Eukaryotic Spt5 couples RNA processing and chromatin modification to transcription elongation, whereas bacterial NusG participates in a wide variety of processes, including RNAP pausing and Rho-dependent termination. Elongating RNAP forms a transcriptional bubble in which ~12. bp of the two DNA strands are locally separated. Within this transcription bubble the growing 3'-end of nascent RNA forms an 8-9. bp long hybrid with the template DNA strand. Because of their location in the transcriptional bubble, NusG and its paralog RfaH recognize specific sequences in the nontemplate DNA strand and regulate transcription elongation in response to these signals.

Original languageEnglish (US)
Pages (from-to)68-71
Number of pages4
JournalCurrent Opinion in Microbiology
Volume18
Issue number1
DOIs
StatePublished - Jan 1 2014

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Peptide Elongation Factors
DNA-Directed RNA Polymerases
Transcription Factors
DNA
RNA
Chromatin
Proteins

All Science Journal Classification (ASJC) codes

  • Infectious Diseases
  • Microbiology (medical)
  • Microbiology
  • Medicine(all)

Cite this

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abstract = "NusG/Spt5 is a transcription elongation factor that assists in DNA-templated RNA synthesis by cellular RNA polymerases (RNAP). The modular domain composition of NusG/Spt5 and the way it binds to RNAP are conserved in all three domains of life. NusG/Spt5 closes RNAP around the DNA binding channel, thereby increasing transcription processivity. Recruitment of additional factors to elongating RNAP may be another conserved function of this ubiquitous protein. Eukaryotic Spt5 couples RNA processing and chromatin modification to transcription elongation, whereas bacterial NusG participates in a wide variety of processes, including RNAP pausing and Rho-dependent termination. Elongating RNAP forms a transcriptional bubble in which ~12. bp of the two DNA strands are locally separated. Within this transcription bubble the growing 3'-end of nascent RNA forms an 8-9. bp long hybrid with the template DNA strand. Because of their location in the transcriptional bubble, NusG and its paralog RfaH recognize specific sequences in the nontemplate DNA strand and regulate transcription elongation in response to these signals.",
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NusG/Spt5 : Are there common functions of this ubiquitous transcription elongation factor? / Yakhnin, Alexander Victor; Babitzke, Paul Lee.

In: Current Opinion in Microbiology, Vol. 18, No. 1, 01.01.2014, p. 68-71.

Research output: Contribution to journalReview article

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AU - Babitzke, Paul Lee

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