Overlapping retrovirus U5 sequence elements are required for efficient integration and initiation of reverse transcription

D. Cobrinik, A. Aiyar, Z. Ge, Michael Katzman, H. Huang, J. Leis

Research output: Contribution to journalArticle

64 Citations (Scopus)

Abstract

A secondary structure in the 5' noncoding region of avian retrovirus RNA, called the U5-leader stem, was shown previously to have a role in initiation of reverse transcription (D. Cobrinik, L. Soskey, and J. Leis, J. Virol. 62:3622-3630, 1988). We now show that an additional RNA secondary structure near the U5 terminus, called the U5-IR stem, is also important for reverse transcription. Mutations that disrupt the U5-IR stem cause a replication defect associated with both a decrease in synthesis of viral DNA in infected cells and a decrease in initiation of reverse transcription in melittin-permeabilized virions. Structure-compensating base substitutions in the U5-IR restore reverse transcription efficiency. In viral DNA, U5-IR sequences are included in the U5 terminal region that functions as a viral integration donor site. When base substitutions are introduced into these sequences, a reduced efficiency of integration in vitro and in vivo is observed. These observations indicate that U5-IR sequences have a structural role in reverse transcription of viral RNA and a sequence-specific role in the integration of viral DNA.

Original languageEnglish (US)
Pages (from-to)3864-3872
Number of pages9
JournalJournal of Virology
Volume65
Issue number7
StatePublished - Jan 1 1991

Fingerprint

Retroviridae
reverse transcription
Reverse Transcription
Viral DNA
RNA
stems
DNA
melittin
Virus Integration
Melitten
Viral RNA
virion
Virion
mutation
Mutation
synthesis

All Science Journal Classification (ASJC) codes

  • Microbiology
  • Immunology
  • Insect Science
  • Virology

Cite this

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abstract = "A secondary structure in the 5' noncoding region of avian retrovirus RNA, called the U5-leader stem, was shown previously to have a role in initiation of reverse transcription (D. Cobrinik, L. Soskey, and J. Leis, J. Virol. 62:3622-3630, 1988). We now show that an additional RNA secondary structure near the U5 terminus, called the U5-IR stem, is also important for reverse transcription. Mutations that disrupt the U5-IR stem cause a replication defect associated with both a decrease in synthesis of viral DNA in infected cells and a decrease in initiation of reverse transcription in melittin-permeabilized virions. Structure-compensating base substitutions in the U5-IR restore reverse transcription efficiency. In viral DNA, U5-IR sequences are included in the U5 terminal region that functions as a viral integration donor site. When base substitutions are introduced into these sequences, a reduced efficiency of integration in vitro and in vivo is observed. These observations indicate that U5-IR sequences have a structural role in reverse transcription of viral RNA and a sequence-specific role in the integration of viral DNA.",
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Overlapping retrovirus U5 sequence elements are required for efficient integration and initiation of reverse transcription. / Cobrinik, D.; Aiyar, A.; Ge, Z.; Katzman, Michael; Huang, H.; Leis, J.

In: Journal of Virology, Vol. 65, No. 7, 01.01.1991, p. 3864-3872.

Research output: Contribution to journalArticle

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AU - Leis, J.

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