Quantitative molecular ensemble interpretation of NMR dipolar couplings without restraints

Scott A. Showalter, Rafael Brüschweiler

Research output: Contribution to journalArticle

85 Scopus citations

Abstract

At room temperature, proteins undergo dynamic excursions away from their average three-dimensional structure. Ensembles obeying the laws of statistical thermodynamics that describe these excursions well are essential for understanding their influence on function. Here we report an unrestrained molecular dynamics ensemble of ubiquitin using the recently refined AMBER99SB force field, which reproduces experimental residual dipolar couplings in multiple alignment media, on the ensemble level, comparable to or better than high resolution averaged structures.

Original languageEnglish (US)
Pages (from-to)4158-4159
Number of pages2
JournalJournal of the American Chemical Society
Volume129
Issue number14
DOIs
StatePublished - Apr 11 2007

All Science Journal Classification (ASJC) codes

  • Catalysis
  • Chemistry(all)
  • Biochemistry
  • Colloid and Surface Chemistry

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