TY - JOUR
T1 - Similarity and dissimilarity in correlations of genomic DNA
AU - Podobnik, Boris
AU - Shao, Jia
AU - Dokholyan, Nikolay V.
AU - Zlatic, Vinko
AU - Eugene Stanley, H.
AU - Grosse, Ivo
N1 - Funding Information:
We thank S.V. Buldyrev for valuable discussions, M. Mohr for her assistance in retrieving and processing the data, and the Ministry of Science of Croatia (Grant 0119623) and the German Federal Ministry of Education and Research (BMBF Grant 0312706A) for financial support.
PY - 2007/1/1
Y1 - 2007/1/1
N2 - We analyze auto-correlations of human chromosomes 1-22 and rice chromosomes 1-12 for seven binary mapping rules and find that the correlation patterns are different for different rules but almost identical for all of the chromosomes, despite their varying lengths and g c contents. We propose a simple stochastic process for modeling these correlations, and we find that the proposed process can reproduce, quantitatively and qualitatively, the correlation patterns found in the genomes of human and rice.
AB - We analyze auto-correlations of human chromosomes 1-22 and rice chromosomes 1-12 for seven binary mapping rules and find that the correlation patterns are different for different rules but almost identical for all of the chromosomes, despite their varying lengths and g c contents. We propose a simple stochastic process for modeling these correlations, and we find that the proposed process can reproduce, quantitatively and qualitatively, the correlation patterns found in the genomes of human and rice.
UR - http://www.scopus.com/inward/record.url?scp=33750429287&partnerID=8YFLogxK
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U2 - 10.1016/j.physa.2006.05.041
DO - 10.1016/j.physa.2006.05.041
M3 - Article
AN - SCOPUS:33750429287
VL - 373
SP - 497
EP - 502
JO - Physica A: Statistical Mechanics and its Applications
JF - Physica A: Statistical Mechanics and its Applications
SN - 0378-4371
ER -