Spatial relationship between polymerase and exonuclease active sites of phage T4 DNA polymerase enzyme

Vidhya Gopalakrishnan, Stephen J. Benkovic

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17 Scopus citations

Abstract

The spatial relationship between the polymerase and exonuclease active sites of bacteriophage T4 DNA polymerase enzyme has been examined using a bulky biotin-streptavidin block at a specified position in an oligonucleotide (Fig. 1). The idea was to monitor the closest distance of approach of the T4 enzyme before being blocked by the bulky biotin-streptavidin complex while performing either of its activities. The results indicated a distance of 4-5 nucleotides between the biotin-streptavidin probe and the exonuclease site and a distance requirement of at least 7 nucleotides between the bulky probe and the 3'-primer terminus for efficient polymerization by the T4 enzyme. The difference in the two distances suggested a separation of 2-3 nucleotides between the two active sites of the T4 enzyme.

Original languageEnglish (US)
Pages (from-to)21123-21126
Number of pages4
JournalJournal of Biological Chemistry
Volume269
Issue number33
StatePublished - Aug 19 1994

All Science Journal Classification (ASJC) codes

  • Biochemistry
  • Molecular Biology
  • Cell Biology

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