STAMPS: Software Tool for Automated MRI Post-processing on a supercomputer

Don C. Bigler, Yaman Aksu, David Jonathan Miller, Qing Yang

Research output: Contribution to journalArticlepeer-review

4 Scopus citations

Abstract

This paper describes a Software Tool for Automated MRI Post-processing (STAMP) of multiple types of brain MRIs on a workstation and for parallel processing on a supercomputer (STAMPS). This software tool enables the automation of nonlinear registration for a large image set and for multiple MR image types. The tool uses standard brain MRI post-processing tools (such as SPM, FSL, and HAMMER) for multiple MR image types in a pipeline fashion. It also contains novel MRI post-processing features. The STAMP image outputs can be used to perform brain analysis using Statistical Parametric Mapping (SPM) or single-/multi-image modality brain analysis using Support Vector Machines (SVMs). Since STAMPS is PBS-based, the supercomputer may be a multi-node computer cluster or one of the latest multi-core computers.

Original languageEnglish (US)
Pages (from-to)146-157
Number of pages12
JournalComputer Methods and Programs in Biomedicine
Volume95
Issue number2
DOIs
StatePublished - Aug 2009

All Science Journal Classification (ASJC) codes

  • Software
  • Computer Science Applications
  • Health Informatics

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