Structure description and identi fication using the tableau representation of protein folding patterns

Arun S. Konagurthu, Arthur Lesk

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Citations (Scopus)

Abstract

We have developed a concise tableau representation of protein folding patterns, based on the order and contact patterns of elements of secondary structure: helices and strands of sheet. The tableaux provide a database, derived from the protein data bank, minable for studies on the general principles of protein architecture, including investigation of the relationship between local supersecondary structure of proteins and the complete folding topology. This chapter outlines the tableaux representation of protein folding patterns and methods to use them to identify structural and substructural similarities.

Original languageEnglish (US)
Title of host publicationProtein Supersecondary Structures
PublisherHumana Press Inc.
Pages51-59
Number of pages9
ISBN (Print)9781627030649
DOIs
StatePublished - Jan 1 2013

Publication series

NameMethods in Molecular Biology
Volume932
ISSN (Print)1064-3745

Fingerprint

Protein Folding
Protein Databases
Databases
Proteins

All Science Journal Classification (ASJC) codes

  • Molecular Biology
  • Genetics

Cite this

Konagurthu, A. S., & Lesk, A. (2013). Structure description and identi fication using the tableau representation of protein folding patterns. In Protein Supersecondary Structures (pp. 51-59). (Methods in Molecular Biology; Vol. 932). Humana Press Inc.. https://doi.org/10.1007/978-1-62703-65-6_4
Konagurthu, Arun S. ; Lesk, Arthur. / Structure description and identi fication using the tableau representation of protein folding patterns. Protein Supersecondary Structures. Humana Press Inc., 2013. pp. 51-59 (Methods in Molecular Biology).
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Konagurthu, AS & Lesk, A 2013, Structure description and identi fication using the tableau representation of protein folding patterns. in Protein Supersecondary Structures. Methods in Molecular Biology, vol. 932, Humana Press Inc., pp. 51-59. https://doi.org/10.1007/978-1-62703-65-6_4

Structure description and identi fication using the tableau representation of protein folding patterns. / Konagurthu, Arun S.; Lesk, Arthur.

Protein Supersecondary Structures. Humana Press Inc., 2013. p. 51-59 (Methods in Molecular Biology; Vol. 932).

Research output: Chapter in Book/Report/Conference proceedingChapter

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Konagurthu AS, Lesk A. Structure description and identi fication using the tableau representation of protein folding patterns. In Protein Supersecondary Structures. Humana Press Inc. 2013. p. 51-59. (Methods in Molecular Biology). https://doi.org/10.1007/978-1-62703-65-6_4